Wall clock time and date at job start Wed Apr 1 2020 05:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29109 * 126.00325 * 2 1 4 4 N 1.29021 * 110.25524 * 180.02562 * 3 2 1 5 5 C 1.32912 * 108.63750 * 0.02562 * 4 3 2 6 6 C 1.34393 * 126.00776 * 179.97438 * 2 1 3 7 7 C 1.50535 * 129.25630 * 359.89123 * 6 2 1 8 8 C 1.53437 * 108.32214 * 196.42513 * 7 6 2 9 9 H 1.08993 * 109.46396 * 70.28737 * 8 7 6 10 10 C 1.50704 * 109.45570 * 190.25260 * 8 7 6 11 11 O 1.21288 * 120.00082 * 8.94759 * 10 8 7 12 12 N 1.34778 * 120.00290 * 188.94371 * 10 8 7 13 13 C 1.46923 * 120.62701 * 353.99235 * 12 10 8 14 14 C 1.53191 * 108.77651 * 126.66445 * 13 12 10 15 15 C 1.53037 * 109.31001 * 54.63264 * 14 13 12 16 16 C 1.53038 * 109.53940 * 298.63233 * 15 14 13 17 17 C 1.46921 * 120.63100 * 174.27108 * 12 10 8 18 18 H 1.09001 * 109.58832 * 113.40899 * 17 12 10 19 19 C 1.52995 * 109.58867 * 353.12086 * 17 12 10 20 20 N 1.46498 * 109.47337 * 73.26984 * 19 17 12 21 21 C 1.36934 * 120.00393 * 174.66713 * 20 19 17 22 22 H 1.08001 * 120.00035 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00321 * 180.02562 * 21 20 19 24 24 N 1.31627 * 119.99703 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00160 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47494 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47094 * 119.99936 * 25 23 21 28 28 H 1.48505 * 109.47107 * 239.99869 * 25 23 21 29 29 C 1.53102 * 109.55159 * 310.27254 * 8 7 6 30 30 C 1.50602 * 129.16377 * 179.77359 * 5 4 3 31 31 H 1.08998 * 109.47069 * 270.04275 * 1 2 3 32 32 H 1.08997 * 109.47468 * 30.03877 * 1 2 3 33 33 H 1.09000 * 109.47048 * 150.04368 * 1 2 3 34 34 H 1.08997 * 109.69424 * 76.71298 * 7 6 2 35 35 H 1.09005 * 109.69029 * 316.12760 * 7 6 2 36 36 H 1.09004 * 109.58556 * 246.45061 * 13 12 10 37 37 H 1.09006 * 109.58837 * 6.87461 * 13 12 10 38 38 H 1.08996 * 109.49909 * 294.68329 * 14 13 12 39 39 H 1.08995 * 109.52541 * 174.60010 * 14 13 12 40 40 H 1.09005 * 109.45679 * 178.61818 * 15 14 13 41 41 H 1.08996 * 109.46292 * 58.65938 * 15 14 13 42 42 H 1.08996 * 109.50095 * 301.41558 * 16 15 14 43 43 H 1.09001 * 109.52315 * 181.33220 * 16 15 14 44 44 H 1.08997 * 109.47258 * 193.27245 * 19 17 12 45 45 H 1.09010 * 109.47439 * 313.27274 * 19 17 12 46 46 H 0.97004 * 119.99961 * 354.67797 * 20 19 17 47 47 H 0.96994 * 119.99420 * 180.02562 * 24 23 21 48 48 H 1.09005 * 109.45791 * 190.10378 * 29 8 7 49 49 H 1.09002 * 109.45544 * 310.04108 * 29 8 7 50 50 H 1.09002 * 109.68602 * 316.32595 * 30 5 4 51 51 H 1.08996 * 109.68626 * 76.90255 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2239 1.0445 0.0000 4 7 3.4657 0.6943 -0.0005 5 6 3.5327 -0.6331 -0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8722 -2.5430 0.0034 8 6 3.1013 -3.3642 0.4146 9 1 3.3139 -3.1959 1.4703 10 6 2.8266 -4.8281 0.1852 11 8 1.8270 -5.1716 -0.4096 12 7 3.6918 -5.7557 0.6409 13 6 4.9691 -5.3546 1.2460 14 6 5.0901 -6.0127 2.6240 15 6 4.9104 -7.5256 2.4799 16 6 3.5169 -7.8247 1.9225 17 6 3.3782 -7.1872 0.5364 18 1 4.0705 -7.6633 -0.1580 19 6 1.9443 -7.3628 0.0323 20 7 1.8833 -7.0290 -1.3928 21 6 0.7204 -7.2168 -2.0909 22 1 -0.1521 -7.6106 -1.5908 23 6 0.6628 -6.9010 -3.4415 24 7 1.7259 -6.4206 -4.0509 25 14 -0.9239 -7.1565 -4.3935 26 1 -1.9638 -7.7031 -3.4852 27 1 -1.3832 -5.8576 -4.9478 28 1 -0.6859 -8.1125 -5.5048 29 6 4.3084 -2.9344 -0.4233 30 6 4.7469 -1.5242 -0.0070 31 1 -0.3633 0.0008 1.0276 32 1 -0.3634 0.8896 -0.5144 33 1 -0.3633 -0.8904 -0.5132 34 1 1.5491 -2.8398 -0.9944 35 1 1.0643 -2.7089 0.7161 36 1 5.7928 -5.6817 0.6113 37 1 4.9974 -4.2704 1.3550 38 1 4.3197 -5.6162 3.2854 39 1 6.0736 -5.8015 3.0435 40 1 5.0204 -7.9989 3.4557 41 1 5.6658 -7.9178 1.7991 42 1 2.7613 -7.4112 2.5904 43 1 3.3805 -8.9032 1.8421 44 1 1.6324 -8.3971 0.1769 45 1 1.2799 -6.7017 0.5890 46 1 2.6669 -6.6751 -1.8420 47 1 1.6855 -6.1996 -4.9945 48 1 5.1299 -3.6324 -0.2614 49 1 4.0360 -2.9336 -1.4788 50 1 5.4791 -1.1426 -0.7186 51 1 5.1847 -1.5544 0.9907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266877085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:59 Heat of formation + Delta-G solvation = 84.381677 kcal Electronic energy + Delta-G solvation = -32847.349898 eV Core-core repulsion = 28784.454933 eV Total energy + Delta-G solvation = -4062.894965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.44713 -41.59122 -38.61391 -37.62516 -36.16810 -35.82644 -33.81113 -33.54857 -31.61061 -31.44957 -31.08228 -28.76525 -27.64569 -26.10923 -25.39167 -24.39447 -24.03126 -22.71881 -22.37872 -21.55609 -20.64613 -19.81115 -19.05013 -18.09741 -17.95416 -17.42122 -16.86396 -16.63786 -16.02191 -15.61755 -15.45169 -15.30443 -15.11069 -15.02531 -14.80746 -14.73486 -14.63748 -14.30296 -14.13128 -13.88719 -13.68779 -13.64322 -13.40583 -13.09296 -13.02593 -12.88151 -12.77851 -12.65186 -12.58011 -12.18413 -12.04338 -11.99170 -11.94178 -11.77917 -11.64419 -11.53633 -11.33263 -11.23921 -10.95902 -10.81057 -9.92240 -9.75656 -9.29401 -8.57132 -7.80281 -4.97134 0.50948 1.40491 1.44413 1.44932 1.46317 1.54574 2.02802 2.21275 2.63468 3.14532 3.43263 3.52934 3.72378 3.73814 3.81681 3.84587 3.92936 3.97075 4.07402 4.18033 4.20964 4.22704 4.31499 4.41994 4.44542 4.49597 4.50843 4.53210 4.58514 4.63977 4.73557 4.83633 4.89199 4.93212 4.95378 5.00941 5.07951 5.08178 5.13177 5.21624 5.21959 5.25593 5.31154 5.36307 5.39127 5.55280 5.58396 5.60259 5.93635 6.40716 6.76609 7.42100 7.47791 7.67387 8.30648 8.53025 9.44622 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007576 B = 0.004815 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.067633 B = 5814.158686 C = 8621.457115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.279 5.279 3 N -0.126 5.126 4 N -0.294 5.294 5 C -0.030 4.030 6 C -0.014 4.014 7 C -0.017 4.017 8 C -0.084 4.084 9 H 0.123 0.877 10 C 0.478 3.522 11 O -0.503 6.503 12 N -0.610 5.610 13 C 0.095 3.905 14 C -0.129 4.129 15 C -0.114 4.114 16 C -0.118 4.118 17 C 0.147 3.853 18 H 0.056 0.944 19 C 0.166 3.834 20 N -0.699 5.699 21 C -0.202 4.202 22 H 0.060 0.940 23 C -0.083 4.083 24 N -0.972 5.972 25 Si 0.959 3.041 26 H -0.271 1.271 27 H -0.301 1.301 28 H -0.296 1.296 29 C -0.110 4.110 30 C -0.022 4.022 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.011 0.989 45 H 0.019 0.981 46 H 0.368 0.632 47 H 0.242 0.758 48 H 0.107 0.893 49 H 0.045 0.955 50 H 0.093 0.907 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.978 6.386 18.468 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.072 5.072 3 N -0.103 5.103 4 N -0.157 5.157 5 C -0.171 4.171 6 C -0.150 4.150 7 C -0.057 4.057 8 C -0.106 4.106 9 H 0.141 0.859 10 C 0.264 3.736 11 O -0.376 6.376 12 N -0.346 5.346 13 C -0.027 4.027 14 C -0.167 4.167 15 C -0.152 4.152 16 C -0.157 4.157 17 C 0.044 3.956 18 H 0.074 0.926 19 C 0.039 3.961 20 N -0.340 5.340 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.274 4.274 24 N -0.626 5.626 25 Si 0.791 3.209 26 H -0.196 1.196 27 H -0.229 1.229 28 H -0.224 1.224 29 C -0.148 4.148 30 C -0.060 4.060 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.028 0.972 45 H 0.037 0.963 46 H 0.200 0.800 47 H 0.051 0.949 48 H 0.125 0.875 49 H 0.064 0.936 50 H 0.112 0.888 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.193 7.750 18.153 21.008 hybrid contribution -1.286 -0.947 -1.466 2.168 sum 5.907 6.803 16.687 18.964 Atomic orbital electron populations 1.22684 0.70460 1.07150 1.06931 1.47146 1.10554 1.04005 1.45462 1.78454 0.96428 1.12230 1.23229 1.74708 1.10184 1.13092 1.17756 1.22229 0.96305 0.91014 1.07509 1.21997 0.91458 0.92450 1.09047 1.19797 0.98501 0.84367 1.03040 1.21222 0.95753 0.90514 1.03110 0.85882 1.20934 0.84898 0.88293 0.79457 1.91233 1.28592 1.80497 1.37243 1.47990 1.19959 1.04931 1.61699 1.22174 0.84276 1.01664 0.94551 1.21916 1.03586 0.95127 0.96040 1.21499 0.95240 0.96792 1.01670 1.21841 0.99156 1.00589 0.94125 1.21285 0.95527 0.81477 0.97341 0.92636 1.20848 0.94565 0.95007 0.85650 1.42271 1.11134 1.75600 1.04961 1.19489 0.91450 1.31122 0.91413 0.92153 1.25253 0.99851 1.04417 0.97903 1.69822 1.29609 1.53697 1.09495 0.85238 0.80544 0.76436 0.78711 1.19564 1.22916 1.22399 1.21757 0.97182 0.96916 0.98930 1.20054 0.91425 0.89876 1.04689 0.86544 0.86587 0.87591 0.91395 0.89148 0.90910 0.87372 0.91613 0.88219 0.90104 0.91638 0.91862 0.90667 0.97159 0.96337 0.79993 0.94940 0.87451 0.93631 0.88819 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 11.27 127.77 1.44 2.53 16 2 N -0.28 -7.25 3.73 -356.42 -1.33 -8.57 16 3 N -0.13 -3.87 13.19 37.02 0.49 -3.38 16 4 N -0.29 -9.33 12.40 -48.98 -0.61 -9.94 16 5 C -0.03 -0.80 7.11 41.75 0.30 -0.51 16 6 C -0.01 -0.39 6.76 41.50 0.28 -0.11 16 7 C -0.02 -0.47 4.77 29.94 0.14 -0.33 16 8 C -0.08 -2.02 1.66 -11.36 -0.02 -2.04 16 9 H 0.12 2.19 7.47 -2.39 -0.02 2.17 16 10 C 0.48 15.45 6.63 87.66 0.58 16.04 16 11 O -0.50 -22.44 9.48 -3.05 -0.03 -22.46 16 12 N -0.61 -16.30 2.97 -795.02 -2.36 -18.66 16 13 C 0.09 1.54 5.03 86.36 0.43 1.98 16 14 C -0.13 -1.59 6.08 30.67 0.19 -1.40 16 15 C -0.11 -1.70 5.88 30.62 0.18 -1.52 16 16 C -0.12 -2.58 5.34 30.67 0.16 -2.41 16 17 C 0.15 4.52 2.91 44.98 0.13 4.65 16 18 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 19 C 0.17 6.93 4.90 86.38 0.42 7.35 16 20 N -0.70 -36.99 3.18 -343.46 -1.09 -38.08 16 21 C -0.20 -11.90 9.73 84.03 0.82 -11.08 16 22 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 23 C -0.08 -5.05 5.50 84.86 0.47 -4.59 16 24 N -0.97 -62.38 13.06 21.65 0.28 -62.09 16 25 Si 0.96 49.01 29.55 68.60 2.03 51.03 16 26 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.30 -15.48 7.11 99.48 0.71 -14.78 16 28 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 29 C -0.11 -2.41 4.64 30.78 0.14 -2.27 16 30 C -0.02 -0.42 6.30 29.97 0.19 -0.23 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.11 1.66 7.96 -2.39 -0.02 1.64 16 34 H 0.07 2.42 7.65 -2.39 -0.02 2.40 16 35 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.11 1.31 4.63 -2.38 -0.01 1.30 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.01 0.45 8.09 -2.39 -0.02 0.43 16 45 H 0.02 0.85 6.40 -2.38 -0.02 0.83 16 46 H 0.37 20.99 7.20 -92.70 -0.67 20.32 16 47 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.11 1.87 5.53 -2.38 -0.01 1.86 16 49 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 50 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 51 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -83.34 388.43 3.51 -79.84 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.27 Total: 26.27 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 5.86 Total: 6.06 kcal Atomic # 7 Polarization: -136.11 SS G_CDS: -4.62 Total: -140.73 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.03 Total: -22.46 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.03 Total: 51.03 kcal Total: -83.34 3.51 -79.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266877085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.218 kcal (2) G-P(sol) polarization free energy of solvation -83.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds