Wall clock time and date at job start Wed Apr 1 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29103 * 126.01165 * 2 1 4 4 N 1.29015 * 110.26219 * 179.97438 * 3 2 1 5 5 C 1.32914 * 108.63442 * 359.97339 * 4 3 2 6 6 C 1.34398 * 126.00135 * 180.02562 * 2 1 3 7 7 C 1.50531 * 129.25978 * 0.12543 * 6 2 1 8 8 C 1.53432 * 108.32888 * 163.57003 * 7 6 2 9 9 H 1.09007 * 109.45536 * 289.70623 * 8 7 6 10 10 C 1.50700 * 109.45889 * 169.74083 * 8 7 6 11 11 O 1.21282 * 120.00190 * 359.97438 * 10 8 7 12 12 N 1.34782 * 119.99989 * 179.97438 * 10 8 7 13 13 C 1.46498 * 119.99671 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.46809 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47241 * 179.97438 * 14 13 12 16 16 H 1.08993 * 110.64287 * 303.31124 * 15 14 13 17 17 C 1.55159 * 110.72134 * 179.97438 * 15 14 13 18 18 C 1.54915 * 101.58047 * 206.13750 * 17 15 14 19 19 N 1.47421 * 104.83199 * 37.01061 * 18 17 15 20 20 C 1.36935 * 125.64861 * 155.89460 * 19 18 17 21 21 H 1.08007 * 120.00070 * 353.88421 * 20 19 18 22 22 C 1.38816 * 120.00445 * 173.89114 * 20 19 18 23 23 N 1.31620 * 119.99630 * 6.81953 * 22 20 19 24 24 Si 1.86798 * 120.00071 * 186.82500 * 22 20 19 25 25 H 1.48501 * 109.47283 * 94.98479 * 24 22 20 26 26 H 1.48503 * 109.46879 * 214.98026 * 24 22 20 27 27 H 1.48498 * 109.47381 * 334.98199 * 24 22 20 28 28 C 1.47024 * 108.70629 * 335.87033 * 19 18 17 29 29 C 1.53106 * 109.55725 * 49.71089 * 8 7 6 30 30 C 1.50599 * 129.16077 * 180.21445 * 5 4 3 31 31 H 1.09003 * 109.46975 * 269.98349 * 1 2 3 32 32 H 1.09007 * 109.46596 * 29.98090 * 1 2 3 33 33 H 1.08995 * 109.47285 * 149.97654 * 1 2 3 34 34 H 1.09005 * 109.69419 * 43.85787 * 7 6 2 35 35 H 1.09003 * 109.69317 * 283.27648 * 7 6 2 36 36 H 0.97001 * 119.99493 * 0.02562 * 12 10 8 37 37 H 1.09000 * 109.47116 * 60.00674 * 13 12 10 38 38 H 1.08997 * 109.47459 * 299.99515 * 13 12 10 39 39 H 1.08998 * 109.47217 * 59.99973 * 14 13 12 40 40 H 1.09003 * 109.47198 * 300.00163 * 14 13 12 41 41 H 1.08996 * 111.00815 * 88.06451 * 17 15 14 42 42 H 1.08999 * 111.00628 * 324.20847 * 17 15 14 43 43 H 1.08997 * 110.36762 * 278.16508 * 18 17 15 44 44 H 1.08998 * 110.36450 * 155.84711 * 18 17 15 45 45 H 0.97001 * 119.99594 * 180.02562 * 23 22 20 46 46 H 1.08992 * 109.88262 * 120.47506 * 28 19 18 47 47 H 1.09000 * 109.87942 * 241.64588 * 28 19 18 48 48 H 1.09004 * 109.45202 * 49.96947 * 29 8 7 49 49 H 1.08994 * 109.45850 * 169.90435 * 29 8 7 50 50 H 1.09002 * 109.69416 * 283.08642 * 30 5 4 51 51 H 1.09000 * 109.68934 * 43.63514 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0443 0.0000 4 7 3.4658 0.6941 0.0005 5 6 3.5327 -0.6333 0.0015 6 6 2.2550 -1.0873 -0.0005 7 6 1.8720 -2.5431 -0.0037 8 6 3.1010 -3.3644 -0.4149 9 1 3.3137 -3.1959 -1.4707 10 6 2.8262 -4.8283 -0.1856 11 8 1.7558 -5.1815 0.2621 12 7 3.7700 -5.7450 -0.4781 13 6 3.5029 -7.1680 -0.2546 14 6 4.7283 -7.9873 -0.6647 15 6 4.4497 -9.4734 -0.4308 16 1 4.1773 -9.6543 0.6089 17 6 5.6757 -10.3325 -0.8385 18 6 5.0061 -11.6864 -1.1827 19 7 3.7310 -11.3236 -1.8275 20 6 3.0245 -12.1101 -2.6978 21 1 3.4417 -13.0454 -3.0409 22 6 1.7722 -11.7054 -3.1393 23 7 1.3207 -10.5083 -2.8302 24 14 0.7278 -12.8598 -4.1717 25 1 -0.2125 -13.5980 -3.2907 26 1 -0.0421 -12.0728 -5.1683 27 1 1.6076 -13.8261 -4.8769 28 6 3.3430 -9.9776 -1.3810 29 6 4.3083 -2.9348 0.4230 30 6 4.7468 -1.5244 0.0068 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3633 -0.8897 -0.5142 34 1 1.0642 -2.7088 -0.7165 35 1 1.5489 -2.8401 0.9941 36 1 4.6262 -5.4624 -0.8358 37 1 2.6441 -7.4746 -0.8517 38 1 3.2905 -7.3365 0.8011 39 1 5.5869 -7.6806 -0.0675 40 1 4.9413 -7.8190 -1.7204 41 1 6.3710 -10.4411 -0.0061 42 1 6.1756 -9.9111 -1.7106 43 1 4.8222 -12.2605 -0.2746 44 1 5.6313 -12.2545 -1.8715 45 1 0.4455 -10.2257 -3.1384 46 1 3.2601 -9.3117 -2.2398 47 1 2.3916 -10.0228 -0.8509 48 1 4.0359 -2.9340 1.4784 49 1 5.1297 -3.6327 0.2609 50 1 5.1844 -1.5549 -0.9911 51 1 5.4795 -1.1425 0.7177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267563954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:36 Heat of formation + Delta-G solvation = 68.974478 kcal Electronic energy + Delta-G solvation = -30253.244218 eV Core-core repulsion = 26189.681147 eV Total energy + Delta-G solvation = -4063.563071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.69605 -40.10953 -37.87311 -36.90661 -35.29235 -35.06931 -32.93128 -31.44050 -30.92746 -30.48588 -28.52381 -28.17694 -26.82783 -25.16839 -24.30547 -23.57086 -22.17800 -21.72199 -20.84735 -20.13761 -19.86987 -19.13521 -17.69770 -17.25298 -16.88778 -16.67828 -15.94391 -15.62053 -15.35571 -14.95962 -14.39924 -14.26089 -14.19124 -14.12663 -13.94889 -13.66265 -13.58618 -13.34678 -13.16121 -12.51944 -12.47172 -12.36187 -12.30176 -11.85059 -11.79697 -11.68287 -11.55650 -11.50807 -11.36012 -11.09509 -10.86340 -10.81108 -10.73793 -10.31746 -10.26862 -10.01362 -9.85734 -9.81546 -9.73138 -9.54699 -9.13899 -8.96186 -8.56950 -6.79755 -5.70990 -3.02666 1.26336 2.00427 2.25450 2.58599 3.09545 3.40696 3.46016 3.47888 3.82133 4.09733 4.24417 4.39186 4.41870 4.51717 4.54131 4.56113 4.79896 4.85167 4.91620 5.06722 5.08939 5.10072 5.21947 5.25680 5.36348 5.47855 5.50024 5.52831 5.60773 5.63715 5.68400 5.71077 5.78455 5.84508 5.93944 5.98339 6.08514 6.17445 6.24953 6.35708 6.40106 6.48075 6.56400 6.64522 6.73597 6.98017 7.48431 7.56420 7.64675 7.83244 8.19925 8.22484 8.28109 9.24079 9.84811 10.51909 11.41114 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016043 B = 0.001988 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.933604 B =14079.522937 C =15439.810118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.283 5.283 3 N -0.099 5.099 4 N -0.262 5.262 5 C -0.023 4.023 6 C -0.014 4.014 7 C -0.026 4.026 8 C -0.103 4.103 9 H 0.106 0.894 10 C 0.517 3.483 11 O -0.537 6.537 12 N -0.724 5.724 13 C 0.116 3.884 14 C -0.111 4.111 15 C -0.115 4.115 16 H 0.067 0.933 17 C -0.126 4.126 18 C 0.132 3.868 19 N -0.608 5.608 20 C -0.229 4.229 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.184 3.816 29 C -0.111 4.111 30 C -0.030 4.030 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.398 0.602 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.017 0.983 44 H 0.037 0.963 45 H 0.252 0.748 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 19.401 7.265 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.075 5.075 3 N -0.077 5.077 4 N -0.127 5.127 5 C -0.163 4.163 6 C -0.148 4.148 7 C -0.065 4.065 8 C -0.125 4.125 9 H 0.124 0.876 10 C 0.302 3.698 11 O -0.413 6.413 12 N -0.375 5.375 13 C -0.007 4.007 14 C -0.149 4.149 15 C -0.135 4.135 16 H 0.086 0.914 17 C -0.164 4.164 18 C 0.006 3.994 19 N -0.334 5.334 20 C -0.357 4.357 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.059 3.941 29 C -0.149 4.149 30 C -0.069 4.069 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.232 0.768 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.035 0.965 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.105 0.895 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.361 20.727 7.466 22.458 hybrid contribution -0.574 -1.502 -0.776 1.785 sum 3.787 19.224 6.690 20.705 Atomic orbital electron populations 1.22322 0.72578 1.06122 1.05265 1.46834 1.09278 1.04571 1.46817 1.78583 0.96101 1.11292 1.21753 1.74791 1.09657 1.11941 1.16264 1.21687 0.94976 0.91383 1.08272 1.21847 0.91240 0.92303 1.09414 1.19927 0.97687 0.84485 1.04420 1.21334 0.96367 0.91922 1.02833 0.87629 1.20291 0.84206 0.87430 0.77892 1.90739 1.24339 1.81783 1.44475 1.46058 1.17822 1.07584 1.66077 1.21545 0.99575 0.77933 1.01644 1.21697 0.96257 0.95275 1.01665 1.22419 0.98119 0.92424 1.00557 0.91408 1.22750 0.96417 0.97323 0.99914 1.21554 0.88340 0.94109 0.95395 1.44499 1.21922 1.15469 1.51558 1.19063 0.97323 1.00870 1.18459 0.90525 1.24817 0.97532 0.97072 1.01023 1.69964 1.19187 1.17338 1.50108 0.86142 0.80560 0.79932 0.79411 1.21654 1.21826 1.20691 1.21225 0.92664 0.85931 0.94251 1.21666 0.96626 0.96230 1.00412 1.19951 0.92568 0.91136 1.03288 0.88830 0.87901 0.88036 0.89332 0.88379 0.76783 0.89861 0.91700 0.92261 0.91291 0.92379 0.91810 0.96524 0.94521 0.93804 0.93849 0.93839 0.90536 0.89784 0.89515 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.38 11.27 59.85 0.67 1.05 16 2 N -0.28 -2.69 3.73 -64.00 -0.24 -2.93 16 3 N -0.10 -1.23 13.19 60.35 0.80 -0.44 16 4 N -0.26 -3.41 12.40 33.17 0.41 -3.00 16 5 C -0.02 -0.24 7.11 -83.12 -0.59 -0.83 16 6 C -0.01 -0.13 6.76 -82.50 -0.56 -0.69 16 7 C -0.03 -0.22 4.71 -27.74 -0.13 -0.35 16 8 C -0.10 -0.83 2.50 -91.49 -0.23 -1.06 16 9 H 0.11 0.74 8.12 -51.92 -0.42 0.32 16 10 C 0.52 6.03 7.15 -10.98 -0.08 5.95 16 11 O -0.54 -8.62 15.82 5.56 0.09 -8.53 16 12 N -0.72 -7.79 5.37 -60.29 -0.32 -8.11 16 13 C 0.12 1.62 5.52 -4.04 -0.02 1.59 16 14 C -0.11 -1.47 4.71 -26.73 -0.13 -1.60 16 15 C -0.12 -1.96 2.98 -88.78 -0.26 -2.23 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.13 -2.05 6.53 -24.58 -0.16 -2.21 16 18 C 0.13 2.69 7.23 -2.53 -0.02 2.68 16 19 N -0.61 -15.43 3.39 -170.07 -0.58 -16.01 16 20 C -0.23 -6.39 10.26 -15.06 -0.15 -6.54 16 21 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 22 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 23 N -0.92 -26.85 10.36 55.49 0.58 -26.28 16 24 Si 0.91 22.15 29.56 -169.99 -5.02 17.13 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.18 4.28 4.12 -3.06 -0.01 4.27 16 29 C -0.11 -0.71 5.17 -26.45 -0.14 -0.84 16 30 C -0.03 -0.21 6.30 -27.70 -0.17 -0.39 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.10 0.33 7.71 -51.93 -0.40 -0.07 16 34 H 0.09 0.72 7.87 -51.93 -0.41 0.31 16 35 H 0.10 0.89 7.78 -51.93 -0.40 0.49 16 36 H 0.40 3.00 7.80 -40.82 -0.32 2.68 16 37 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.04 1.11 7.16 -51.93 -0.37 0.74 16 47 H 0.04 1.15 7.37 -51.93 -0.38 0.77 16 48 H 0.08 0.54 8.12 -51.93 -0.42 0.11 16 49 H 0.08 0.39 7.30 -51.93 -0.38 0.01 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -36.31 403.38 -8.80 -45.11 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -8.51 Total: -1.51 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.08 Total: -1.52 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.64 Total: -56.76 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.31 -8.80 -45.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267563954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.082 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds