Wall clock time and date at job start Wed Apr 1 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29102 * 126.00686 * 2 1 4 4 N 1.29022 * 110.25905 * 179.79694 * 3 2 1 5 5 C 1.32906 * 108.63460 * 0.28928 * 4 3 2 6 6 C 1.34388 * 126.00442 * 180.19203 * 2 1 3 7 7 C 1.50537 * 129.25683 * 359.86037 * 6 2 1 8 8 C 1.53441 * 108.32439 * 196.76491 * 7 6 2 9 9 H 1.09004 * 109.45382 * 70.28569 * 8 7 6 10 10 C 1.50696 * 109.45699 * 190.24978 * 8 7 6 11 11 O 1.21286 * 119.99738 * 0.02562 * 10 8 7 12 12 N 1.34771 * 120.00329 * 180.02562 * 10 8 7 13 13 C 1.46495 * 120.00307 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47351 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47213 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.64156 * 308.13393 * 15 14 13 17 17 C 1.55160 * 110.71796 * 184.99889 * 15 14 13 18 18 C 1.54913 * 101.58212 * 206.13233 * 17 15 14 19 19 N 1.47424 * 104.83121 * 37.00435 * 18 17 15 20 20 C 1.36937 * 125.64674 * 155.91588 * 19 18 17 21 21 H 1.07995 * 119.99968 * 342.05065 * 20 19 18 22 22 C 1.38814 * 119.99760 * 162.05066 * 20 19 18 23 23 N 1.31618 * 119.99689 * 156.31199 * 22 20 19 24 24 Si 1.86793 * 120.00135 * 336.30988 * 22 20 19 25 25 H 1.48497 * 109.47136 * 84.67551 * 24 22 20 26 26 H 1.48501 * 109.47012 * 204.67765 * 24 22 20 27 27 H 1.48500 * 109.47020 * 324.67378 * 24 22 20 28 28 C 1.47020 * 108.70225 * 335.87819 * 19 18 17 29 29 C 1.53103 * 109.55616 * 310.27735 * 8 7 6 30 30 C 1.50596 * 129.16710 * 179.84094 * 5 4 3 31 31 H 1.09002 * 109.47390 * 269.81194 * 1 2 3 32 32 H 1.09004 * 109.47011 * 29.80667 * 1 2 3 33 33 H 1.08996 * 109.47344 * 149.80637 * 1 2 3 34 34 H 1.08997 * 109.69480 * 316.47906 * 7 6 2 35 35 H 1.09002 * 109.69274 * 77.02470 * 7 6 2 36 36 H 0.97001 * 119.99547 * 0.02562 * 12 10 8 37 37 H 1.09001 * 109.47334 * 300.00162 * 13 12 10 38 38 H 1.08994 * 109.47516 * 60.00117 * 13 12 10 39 39 H 1.09001 * 109.46844 * 300.00229 * 14 13 12 40 40 H 1.08995 * 109.47426 * 59.99552 * 14 13 12 41 41 H 1.08998 * 111.00506 * 324.20665 * 17 15 14 42 42 H 1.09007 * 111.00579 * 88.01918 * 17 15 14 43 43 H 1.08994 * 110.36846 * 155.84864 * 18 17 15 44 44 H 1.09006 * 110.36548 * 278.06220 * 18 17 15 45 45 H 0.97003 * 120.00216 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.87918 * 241.63379 * 28 19 18 47 47 H 1.09002 * 109.88622 * 120.47906 * 28 19 18 48 48 H 1.09001 * 109.44803 * 190.08559 * 29 8 7 49 49 H 1.08993 * 109.45303 * 310.03851 * 29 8 7 50 50 H 1.09002 * 109.68841 * 76.89079 * 30 5 4 51 51 H 1.09001 * 109.72557 * 316.33500 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4658 0.6942 0.0043 5 6 3.5327 -0.6332 0.0009 6 6 2.2550 -1.0872 -0.0036 7 6 1.8720 -2.5430 -0.0057 8 6 3.0989 -3.3652 0.4105 9 1 3.3059 -3.1988 1.4677 10 6 2.8253 -4.8285 0.1768 11 8 1.7573 -5.1808 -0.2774 12 7 3.7674 -5.7459 0.4724 13 6 3.5012 -7.1685 0.2457 14 6 4.7240 -7.9888 0.6616 15 6 4.4462 -9.4745 0.4243 16 1 3.5067 -9.7692 0.8918 17 6 5.6183 -10.3432 0.9525 18 6 5.4978 -11.6038 0.0601 19 7 5.0976 -11.0923 -1.2634 20 6 5.3093 -11.7233 -2.4602 21 1 6.0429 -12.5126 -2.5321 22 6 4.5810 -11.3484 -3.5808 23 7 5.0598 -11.5803 -4.7847 24 14 2.9215 -10.5147 -3.3803 25 1 3.1204 -9.0557 -3.1886 26 1 2.1008 -10.7470 -4.5959 27 1 2.2239 -11.0789 -2.1969 28 6 4.4329 -9.7931 -1.0855 29 6 4.3106 -2.9338 -0.4201 30 6 4.7467 -1.5243 0.0003 31 1 -0.3634 -0.0034 1.0277 32 1 -0.3633 0.8917 -0.5108 33 1 -0.3634 -0.8882 -0.5168 34 1 1.0603 -2.7103 0.7023 35 1 1.5538 -2.8377 -1.0057 36 1 4.6214 -5.4641 0.8360 37 1 2.6394 -7.4758 0.8381 38 1 3.2937 -7.3355 -0.8112 39 1 5.5861 -7.6815 0.0696 40 1 4.9312 -7.8218 1.7186 41 1 6.5750 -9.8447 0.7972 42 1 5.4765 -10.5932 2.0040 43 1 6.4579 -12.1155 -0.0053 44 1 4.7363 -12.2765 0.4547 45 1 4.5507 -11.3186 -5.5679 46 1 3.4048 -9.8508 -1.4431 47 1 4.9749 -9.0214 -1.6321 48 1 5.1311 -3.6321 -0.2547 49 1 4.0439 -2.9309 -1.4769 50 1 5.1790 -1.5566 1.0004 51 1 5.4835 -1.1418 -0.7060 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267563955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:40 Heat of formation + Delta-G solvation = 76.502503 kcal Electronic energy + Delta-G solvation = -30393.645272 eV Core-core repulsion = 26330.408641 eV Total energy + Delta-G solvation = -4063.236631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.76372 -40.29422 -38.28160 -37.03970 -35.47063 -35.21427 -33.05252 -31.64193 -31.01155 -30.67682 -29.27351 -28.25937 -27.29308 -25.23340 -24.31304 -23.65928 -22.44979 -21.80067 -21.01823 -20.27120 -20.11822 -19.60478 -17.83123 -17.30452 -16.99291 -16.79211 -16.30883 -16.00705 -15.58386 -15.13802 -14.70376 -14.37448 -14.31680 -14.22993 -13.99972 -13.71832 -13.59393 -13.50193 -13.28761 -12.99932 -12.71411 -12.59006 -12.44709 -12.40614 -12.10599 -11.90311 -11.59435 -11.58788 -11.46394 -11.36642 -11.10359 -10.93189 -10.83277 -10.54475 -10.48179 -10.33171 -10.16803 -9.94669 -9.80381 -9.30862 -9.22869 -9.17924 -8.60671 -7.04645 -5.94295 -3.22493 1.19069 1.93216 2.19482 2.39170 2.90148 3.36939 3.50159 3.52852 3.73415 3.99279 4.17158 4.29456 4.33350 4.45045 4.47687 4.56174 4.68792 4.73856 4.78055 4.82172 4.92094 4.95345 4.99630 5.01358 5.14987 5.19393 5.36099 5.39062 5.41421 5.45366 5.49163 5.55486 5.61997 5.68763 5.72392 5.77398 5.87921 5.90546 6.02623 6.09762 6.14108 6.17979 6.28584 6.32051 6.47895 6.61126 6.78281 6.80128 7.27415 7.73458 7.99649 8.16269 8.32016 8.85124 9.70588 10.19924 11.22194 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.002109 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.647807 B =13270.406353 C =13868.853673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.283 5.283 3 N -0.098 5.098 4 N -0.261 5.261 5 C -0.021 4.021 6 C -0.016 4.016 7 C -0.026 4.026 8 C -0.101 4.101 9 H 0.106 0.894 10 C 0.517 3.483 11 O -0.538 6.538 12 N -0.725 5.725 13 C 0.113 3.887 14 C -0.117 4.117 15 C -0.099 4.099 16 H 0.076 0.924 17 C -0.125 4.125 18 C 0.131 3.869 19 N -0.611 5.611 20 C -0.243 4.243 21 H 0.092 0.908 22 C 0.021 3.979 23 N -0.907 5.907 24 Si 0.887 3.113 25 H -0.286 1.286 26 H -0.305 1.305 27 H -0.280 1.280 28 C 0.124 3.876 29 C -0.113 4.113 30 C -0.030 4.030 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.401 0.599 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.023 0.977 45 H 0.263 0.737 46 H 0.024 0.976 47 H 0.040 0.960 48 H 0.085 0.915 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.062 21.308 16.012 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.075 5.075 3 N -0.076 5.076 4 N -0.125 5.125 5 C -0.162 4.162 6 C -0.150 4.150 7 C -0.065 4.065 8 C -0.123 4.123 9 H 0.124 0.876 10 C 0.303 3.697 11 O -0.414 6.414 12 N -0.376 5.376 13 C -0.010 4.010 14 C -0.155 4.155 15 C -0.119 4.119 16 H 0.094 0.906 17 C -0.163 4.163 18 C 0.006 3.994 19 N -0.338 5.338 20 C -0.370 4.370 21 H 0.110 0.890 22 C -0.178 4.178 23 N -0.551 5.551 24 Si 0.719 3.281 25 H -0.213 1.213 26 H -0.233 1.233 27 H -0.207 1.207 28 C -0.001 4.001 29 C -0.152 4.152 30 C -0.069 4.069 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.235 0.765 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.073 0.927 46 H 0.041 0.959 47 H 0.058 0.942 48 H 0.103 0.897 49 H 0.097 0.903 50 H 0.105 0.895 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.849 22.581 15.410 27.956 hybrid contribution -1.027 -0.499 0.124 1.148 sum -6.876 22.082 15.534 27.860 Atomic orbital electron populations 1.22316 0.72607 1.06187 1.05179 1.46833 1.09260 1.04563 1.46868 1.78595 0.96114 1.11255 1.21624 1.74803 1.09617 1.11919 1.16205 1.21695 0.94961 0.91406 1.08097 1.21811 0.91267 0.92236 1.09683 1.19919 0.97558 0.84624 1.04430 1.21320 0.96575 0.91582 1.02790 0.87632 1.20363 0.84132 0.87564 0.77686 1.90738 1.24716 1.81859 1.44101 1.46021 1.18284 1.07317 1.66023 1.21534 0.98501 0.78547 1.02391 1.21780 0.97428 0.94774 1.01519 1.22112 0.99218 0.93119 0.97414 0.90563 1.22781 0.97856 0.97221 0.98437 1.21613 0.98070 0.93911 0.85846 1.44799 1.69202 1.17422 1.02341 1.18658 1.17132 1.17858 0.83303 0.89022 1.24954 0.98601 0.99354 0.94864 1.69859 1.37454 1.50581 0.97229 0.86913 0.86575 0.79071 0.75521 1.21305 1.23283 1.20703 1.21726 0.96173 0.89352 0.92810 1.21686 0.96492 0.96342 1.00663 1.19945 0.92626 0.91068 1.03289 0.88878 0.87837 0.88075 0.89434 0.88352 0.76488 0.91348 0.90835 0.90742 0.91261 0.91236 0.91624 0.93388 0.95914 0.92738 0.95871 0.94215 0.89661 0.90339 0.89526 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.27 59.85 0.67 1.00 16 2 N -0.28 -2.54 3.73 -64.00 -0.24 -2.78 16 3 N -0.10 -1.17 13.19 60.35 0.80 -0.38 16 4 N -0.26 -3.31 12.40 33.16 0.41 -2.90 16 5 C -0.02 -0.21 7.11 -83.12 -0.59 -0.81 16 6 C -0.02 -0.14 6.76 -82.50 -0.56 -0.70 16 7 C -0.03 -0.20 4.68 -27.73 -0.13 -0.33 16 8 C -0.10 -0.72 2.50 -91.49 -0.23 -0.94 16 9 H 0.11 0.56 8.12 -51.93 -0.42 0.14 16 10 C 0.52 5.42 7.15 -10.99 -0.08 5.34 16 11 O -0.54 -7.97 15.82 5.55 0.09 -7.88 16 12 N -0.73 -6.76 5.37 -60.30 -0.32 -7.09 16 13 C 0.11 1.39 5.56 -4.04 -0.02 1.36 16 14 C -0.12 -1.32 4.73 -26.73 -0.13 -1.45 16 15 C -0.10 -1.50 2.93 -88.79 -0.26 -1.76 16 16 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.12 -1.81 6.53 -24.58 -0.16 -1.97 16 18 C 0.13 2.50 7.23 -2.53 -0.02 2.48 16 19 N -0.61 -14.69 3.21 -170.08 -0.55 -15.24 16 20 C -0.24 -6.92 10.56 -15.06 -0.16 -7.08 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 23 N -0.91 -28.24 13.97 55.49 0.78 -27.46 16 24 Si 0.89 23.26 24.39 -169.99 -4.15 19.11 16 25 H -0.29 -7.23 6.84 56.52 0.39 -6.85 16 26 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 27 H -0.28 -7.27 6.87 56.52 0.39 -6.88 16 28 C 0.12 2.63 4.14 -3.07 -0.01 2.62 16 29 C -0.11 -0.72 5.17 -26.46 -0.14 -0.86 16 30 C -0.03 -0.21 6.30 -27.72 -0.17 -0.38 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.27 7.96 -51.93 -0.41 -0.15 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.86 7.78 -51.93 -0.40 0.45 16 36 H 0.40 2.42 7.80 -40.82 -0.32 2.11 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 39 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.02 0.55 3.52 -51.93 -0.18 0.37 16 47 H 0.04 0.88 7.68 -51.93 -0.40 0.48 16 48 H 0.08 0.40 7.30 -51.93 -0.38 0.02 16 49 H 0.08 0.60 8.12 -51.93 -0.42 0.17 16 50 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 398.86 15.07 6.01 6.01 Total: -1.00 -37.98 398.86 -7.66 -45.63 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -8.41 Total: -4.08 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.08 Total: -2.96 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.87 Total: -55.85 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.15 Total: 19.11 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.98 -7.66 -45.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267563955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.137 kcal (2) G-P(sol) polarization free energy of solvation -37.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds