Wall clock time and date at job start Wed Apr 1 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29105 * 126.00595 * 2 1 4 4 N 1.29022 * 110.25751 * 179.97438 * 3 2 1 5 5 C 1.32909 * 108.63453 * 359.97132 * 4 3 2 6 6 C 1.34402 * 126.00665 * 180.02562 * 2 1 3 7 7 C 1.50530 * 129.25457 * 0.25300 * 6 2 1 8 8 C 1.53438 * 108.32593 * 163.45635 * 7 6 2 9 9 H 1.09004 * 109.45305 * 289.69022 * 8 7 6 10 10 C 1.50701 * 109.45769 * 169.72419 * 8 7 6 11 11 O 1.21280 * 119.99947 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99836 * 180.02562 * 10 8 7 13 13 C 1.46498 * 119.99812 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47169 * 179.97438 * 13 12 10 15 15 C 1.52990 * 109.47255 * 179.97438 * 14 13 12 16 16 H 1.08994 * 110.88983 * 54.30039 * 15 14 13 17 17 C 1.55161 * 111.00335 * 178.18019 * 15 14 13 18 18 C 1.54323 * 102.94133 * 153.57694 * 17 15 14 19 19 N 1.47017 * 107.27482 * 337.80589 * 18 17 15 20 20 C 1.36934 * 125.65070 * 178.90982 * 19 18 17 21 21 H 1.08005 * 119.99808 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00060 * 0.02562 * 20 19 18 23 23 N 1.31617 * 119.99700 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46884 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46745 * 119.99914 * 24 22 20 27 27 H 1.48495 * 109.47637 * 240.00255 * 24 22 20 28 28 C 1.47473 * 108.72118 * 358.97591 * 19 18 17 29 29 C 1.53197 * 109.56446 * 49.72278 * 8 7 6 30 30 C 1.50601 * 129.16010 * 180.12420 * 5 4 3 31 31 H 1.09001 * 109.47395 * 89.97572 * 1 2 3 32 32 H 1.09007 * 109.47315 * 209.97261 * 1 2 3 33 33 H 1.09005 * 109.47235 * 329.96585 * 1 2 3 34 34 H 1.08997 * 109.69407 * 283.16558 * 7 6 2 35 35 H 1.09000 * 109.69643 * 43.74741 * 7 6 2 36 36 H 0.97001 * 119.99623 * 359.97438 * 12 10 8 37 37 H 1.09004 * 109.46740 * 299.98995 * 13 12 10 38 38 H 1.08994 * 109.47480 * 59.99639 * 13 12 10 39 39 H 1.09003 * 109.46831 * 299.99716 * 14 13 12 40 40 H 1.09004 * 109.47149 * 59.99433 * 14 13 12 41 41 H 1.09004 * 110.71828 * 271.94062 * 17 15 14 42 42 H 1.08999 * 110.72302 * 35.03405 * 17 15 14 43 43 H 1.08997 * 109.88202 * 97.22420 * 18 17 15 44 44 H 1.09006 * 109.88114 * 218.38343 * 18 17 15 45 45 H 0.97005 * 119.99555 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.34766 * 265.25500 * 28 19 18 47 47 H 1.08998 * 110.40580 * 142.91864 * 28 19 18 48 48 H 1.08998 * 109.50552 * 169.91220 * 29 8 7 49 49 H 1.09004 * 109.45592 * 49.95137 * 29 8 7 50 50 H 1.09002 * 109.69361 * 283.22350 * 30 5 4 51 51 H 1.09006 * 109.69070 * 43.76456 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0444 0.0000 4 7 3.4657 0.6942 0.0005 5 6 3.5327 -0.6332 0.0015 6 6 2.2551 -1.0872 -0.0005 7 6 1.8722 -2.5430 -0.0063 8 6 3.1012 -3.3635 -0.4191 9 1 3.3135 -3.1933 -1.4747 10 6 2.8266 -4.8278 -0.1921 11 8 1.7560 -5.1819 0.2544 12 7 3.7708 -5.7439 -0.4853 13 6 3.5036 -7.1674 -0.2652 14 6 4.7290 -7.9859 -0.6766 15 6 4.4503 -9.4724 -0.4461 16 1 3.5365 -9.7799 -0.9545 17 6 5.6555 -10.3404 -0.8951 18 6 5.5214 -11.6002 -0.0140 19 7 4.7240 -11.2267 1.1633 20 6 4.3598 -12.0683 2.1803 21 1 3.7699 -11.6955 3.0046 22 6 4.7488 -13.4005 2.1517 23 7 5.4681 -13.8545 1.1474 24 14 4.2526 -14.5483 3.5394 25 1 3.4528 -13.7977 4.5406 26 1 3.4392 -15.6636 2.9922 27 1 5.4708 -15.0960 4.1884 28 6 4.3796 -9.7960 1.0672 29 6 4.3093 -2.9354 0.4200 30 6 4.7468 -1.5242 0.0050 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8903 0.5134 33 1 -0.3634 0.8897 0.5144 34 1 1.5491 -2.8418 0.9909 35 1 1.0643 -2.7075 -0.7193 36 1 4.6268 -5.4606 -0.8428 37 1 3.2900 -7.3379 0.7901 38 1 2.6454 -7.4728 -0.8636 39 1 4.9423 -7.8152 -1.7319 40 1 5.5875 -7.6805 -0.0784 41 1 5.5731 -10.5978 -1.9512 42 1 6.5960 -9.8263 -0.6972 43 1 5.0147 -12.3891 -0.5698 44 1 6.5086 -11.9401 0.2995 45 1 5.7403 -14.7854 1.1277 46 1 5.1026 -9.1943 1.6180 47 1 3.3725 -9.6212 1.4458 48 1 5.1312 -3.6326 0.2568 49 1 4.0370 -2.9365 1.4754 50 1 5.1842 -1.5529 -0.9930 51 1 5.4797 -1.1435 0.7164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267563956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:44 Heat of formation + Delta-G solvation = 43.245349 kcal Electronic energy + Delta-G solvation = -29887.769803 eV Core-core repulsion = 25823.091033 eV Total energy + Delta-G solvation = -4064.678770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.43195 -41.03104 -39.40001 -37.67338 -36.42166 -35.86100 -34.71794 -32.61217 -31.53043 -31.43346 -30.54642 -28.74613 -28.16598 -26.67643 -25.42197 -24.30146 -23.40138 -22.39894 -21.87522 -21.68602 -20.93349 -20.34665 -18.84399 -18.45361 -17.90848 -17.44337 -16.94529 -16.90527 -16.57385 -16.15027 -15.76304 -15.56963 -15.22733 -14.85528 -14.82973 -14.62311 -14.47815 -14.11899 -14.03052 -13.79617 -13.68356 -13.63269 -13.28488 -13.11959 -13.03317 -13.00317 -12.80450 -12.64461 -12.57168 -12.18712 -12.14622 -11.96655 -11.93051 -11.77899 -11.59161 -11.46341 -11.34349 -11.27998 -10.95053 -10.73266 -10.70149 -10.00671 -9.86688 -8.86704 -7.84534 -5.19198 0.53320 1.43686 1.44922 1.45735 1.47884 1.56218 1.67283 2.21215 2.49813 3.17341 3.33450 3.43542 3.70783 3.73437 3.78609 3.79334 3.84731 3.94763 4.04361 4.14575 4.20405 4.24549 4.29726 4.42119 4.44797 4.45840 4.52618 4.56736 4.66704 4.68990 4.75121 4.82451 4.90674 4.92639 4.96262 5.04132 5.06452 5.10654 5.18657 5.22939 5.24311 5.32047 5.34461 5.46715 5.53095 5.58135 5.61416 5.73976 5.82059 6.22643 6.63940 7.12670 7.32659 7.44896 7.81158 8.44971 9.25909 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.001647 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.254310 B =17001.654392 C =17461.085191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.278 5.278 3 N -0.131 5.131 4 N -0.301 5.301 5 C -0.033 4.033 6 C -0.015 4.015 7 C -0.021 4.021 8 C -0.092 4.092 9 H 0.130 0.870 10 C 0.519 3.481 11 O -0.584 6.584 12 N -0.712 5.712 13 C 0.123 3.877 14 C -0.099 4.099 15 C -0.085 4.085 16 H 0.070 0.930 17 C -0.122 4.122 18 C 0.180 3.820 19 N -0.632 5.632 20 C -0.241 4.241 21 H 0.079 0.921 22 C -0.070 4.070 23 N -0.951 5.951 24 Si 0.977 3.023 25 H -0.267 1.267 26 H -0.292 1.292 27 H -0.291 1.291 28 C 0.133 3.867 29 C -0.106 4.106 30 C -0.028 4.028 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.419 0.581 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.006 0.994 44 H 0.003 0.997 45 H 0.246 0.754 46 H 0.026 0.974 47 H 0.032 0.968 48 H 0.109 0.891 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 27.954 -8.293 29.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.071 5.071 3 N -0.109 5.109 4 N -0.164 5.164 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.060 4.060 8 C -0.113 4.113 9 H 0.148 0.852 10 C 0.306 3.694 11 O -0.464 6.464 12 N -0.364 5.364 13 C -0.001 4.001 14 C -0.137 4.137 15 C -0.105 4.105 16 H 0.089 0.911 17 C -0.161 4.161 18 C 0.055 3.945 19 N -0.358 5.358 20 C -0.370 4.370 21 H 0.097 0.903 22 C -0.262 4.262 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.191 1.191 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.008 3.992 29 C -0.144 4.144 30 C -0.066 4.066 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.257 0.743 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.024 0.976 44 H 0.021 0.979 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.127 0.873 49 H 0.084 0.916 50 H 0.123 0.877 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.786 29.115 -7.906 30.720 hybrid contribution -0.246 -2.029 0.801 2.195 sum -6.033 27.086 -7.105 28.645 Atomic orbital electron populations 1.22732 0.70243 1.07539 1.06868 1.47212 1.10648 1.04004 1.45204 1.78513 0.96458 1.12513 1.23379 1.74749 1.10297 1.13578 1.17759 1.22315 0.96631 0.90949 1.07570 1.22050 0.91080 0.92749 1.09134 1.19905 0.98287 0.83643 1.04177 1.21317 0.96527 0.89110 1.04375 0.85230 1.20816 0.83418 0.88688 0.76510 1.90723 1.26524 1.82656 1.46513 1.45875 1.18701 1.06158 1.65660 1.21259 0.98377 0.79834 1.00644 1.21591 0.97152 0.91409 1.03596 1.22157 0.98331 0.95147 0.94903 0.91128 1.22761 0.98331 0.95620 0.99346 1.20946 0.93143 0.93704 0.86725 1.44869 1.61802 1.06188 1.22955 1.19505 1.27169 0.90777 0.99572 0.90296 1.25655 1.01012 0.98701 1.00879 1.70208 1.42788 1.14361 1.32735 0.85024 0.77163 0.78660 0.78604 1.19105 1.21906 1.21826 1.21855 0.97124 0.84368 0.95807 1.21687 0.96792 0.96368 0.99557 1.20076 0.91466 0.90600 1.04504 0.87019 0.86342 0.86934 0.89351 0.88511 0.74336 0.93172 0.92392 0.88435 0.89927 0.90080 0.90429 0.97612 0.97904 0.94491 0.95598 0.94963 0.87262 0.91598 0.87656 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.27 127.77 1.44 1.82 16 2 N -0.28 -4.44 3.73 -356.40 -1.33 -5.77 16 3 N -0.13 -3.01 13.19 37.02 0.49 -2.52 16 4 N -0.30 -7.28 12.40 -48.99 -0.61 -7.89 16 5 C -0.03 -0.59 7.11 41.75 0.30 -0.29 16 6 C -0.01 -0.23 6.76 41.50 0.28 0.05 16 7 C -0.02 -0.25 4.68 29.94 0.14 -0.11 16 8 C -0.09 -0.89 2.50 -11.33 -0.03 -0.92 16 9 H 0.13 0.71 8.12 -2.38 -0.02 0.69 16 10 C 0.52 8.49 7.15 87.66 0.63 9.11 16 11 O -0.58 -15.20 15.82 -3.03 -0.05 -15.24 16 12 N -0.71 -9.42 5.37 -463.06 -2.49 -11.91 16 13 C 0.12 2.40 5.55 86.38 0.48 2.88 16 14 C -0.10 -1.81 4.84 30.59 0.15 -1.66 16 15 C -0.09 -2.51 3.04 -9.40 -0.03 -2.54 16 16 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 17 C -0.12 -4.03 6.42 31.78 0.20 -3.83 16 18 C 0.18 8.82 5.37 86.73 0.47 9.29 16 19 N -0.63 -32.68 3.40 -691.86 -2.35 -35.03 16 20 C -0.24 -13.79 10.28 84.03 0.86 -12.93 16 21 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 22 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 23 N -0.95 -58.11 10.31 21.65 0.22 -57.89 16 24 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 C 0.13 5.22 6.04 86.85 0.52 5.74 16 29 C -0.11 -0.82 5.18 30.82 0.16 -0.67 16 30 C -0.03 -0.27 6.30 29.97 0.19 -0.08 16 31 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.12 0.28 7.96 -2.38 -0.02 0.26 16 33 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.09 1.27 7.78 -2.39 -0.02 1.25 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.42 2.48 7.80 -92.71 -0.72 1.75 16 37 H 0.05 1.24 7.59 -2.38 -0.02 1.22 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.37 8.03 -2.39 -0.02 1.35 16 41 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.08 2.26 8.04 -2.39 -0.02 2.24 16 43 H 0.01 0.31 7.38 -2.39 -0.02 0.30 16 44 H 0.00 0.15 7.51 -2.38 -0.02 0.13 16 45 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 46 H 0.03 0.98 7.96 -2.39 -0.02 0.97 16 47 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 48 H 0.11 0.34 7.30 -2.39 -0.02 0.33 16 49 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 50 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -84.59 404.18 2.35 -82.24 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 0.21 Total: 3.16 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.23 Total: 2.29 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -6.06 Total: -121.01 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.05 Total: -15.24 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -84.59 2.35 -82.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267563956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.485 kcal (2) G-P(sol) polarization free energy of solvation -84.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds