Wall clock time and date at job start Wed Apr 1 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.29109 * 126.00212 * 2 1 4 4 N 1.29021 * 110.25759 * 179.68048 * 3 2 1 5 5 C 1.32906 * 108.63349 * 359.97438 * 4 3 2 6 6 C 1.34390 * 126.00849 * 179.69138 * 2 1 3 7 7 C 1.50535 * 129.25498 * 0.49439 * 6 2 1 8 8 C 1.53437 * 108.32223 * 163.49280 * 7 6 2 9 9 H 1.08993 * 109.46429 * 289.70684 * 8 7 6 10 10 C 1.50706 * 109.45435 * 169.73879 * 8 7 6 11 11 O 1.21273 * 120.00258 * 325.93710 * 10 8 7 12 12 N 1.34781 * 119.99792 * 145.94373 * 10 8 7 13 13 C 1.47023 * 125.64493 * 4.99567 * 12 10 8 14 14 C 1.54329 * 107.26934 * 181.02387 * 13 12 10 15 15 C 1.55158 * 102.93680 * 22.19549 * 14 13 12 16 16 H 1.08997 * 111.00630 * 82.61535 * 15 14 13 17 17 C 1.53001 * 111.00131 * 206.41827 * 15 14 13 18 18 C 1.52998 * 109.47535 * 293.54923 * 17 15 14 19 19 N 1.46500 * 109.47239 * 179.97438 * 18 17 15 20 20 C 1.36931 * 120.00080 * 180.02562 * 19 18 17 21 21 H 1.08007 * 120.00287 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00469 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46801 * 89.99861 * 24 22 20 26 26 H 1.48489 * 109.46990 * 209.99890 * 24 22 20 27 27 H 1.48502 * 109.46793 * 329.99966 * 24 22 20 28 28 C 1.47419 * 125.64755 * 184.69403 * 12 10 8 29 29 C 1.53109 * 109.54653 * 49.71697 * 8 7 6 30 30 C 1.50600 * 129.16171 * 180.21078 * 5 4 3 31 31 H 1.09002 * 109.47176 * 90.02664 * 1 2 3 32 32 H 1.09002 * 109.46443 * 210.01955 * 1 2 3 33 33 H 1.08997 * 109.47173 * 330.01950 * 1 2 3 34 34 H 1.08999 * 109.69244 * 283.20597 * 7 6 2 35 35 H 1.09007 * 109.69356 * 43.78927 * 7 6 2 36 36 H 1.08995 * 109.88932 * 300.44558 * 13 12 10 37 37 H 1.08998 * 109.88260 * 61.46125 * 13 12 10 38 38 H 1.09000 * 110.71936 * 140.55389 * 14 13 12 39 39 H 1.08999 * 110.72003 * 263.65859 * 14 13 12 40 40 H 1.09000 * 109.46857 * 53.55363 * 17 15 14 41 41 H 1.09003 * 109.47348 * 173.54464 * 17 15 14 42 42 H 1.09000 * 109.47407 * 300.00103 * 18 17 15 43 43 H 1.09003 * 109.46796 * 59.99820 * 18 17 15 44 44 H 0.97003 * 120.00125 * 0.02562 * 19 18 17 45 45 H 0.96999 * 120.00543 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.36514 * 274.74288 * 28 12 10 47 47 H 1.09001 * 110.36978 * 37.06460 * 28 12 10 48 48 H 1.09001 * 109.45825 * 49.95993 * 29 8 7 49 49 H 1.09009 * 109.45192 * 169.88586 * 29 8 7 50 50 H 1.09004 * 109.68772 * 283.15115 * 30 5 4 51 51 H 1.08997 * 109.69487 * 43.72109 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6944 0.0068 5 6 3.5328 -0.6330 0.0120 6 6 2.2552 -1.0871 0.0059 7 6 1.8723 -2.5429 0.0036 8 6 3.1031 -3.3648 -0.4014 9 1 3.3199 -3.1981 -1.4564 10 6 2.8275 -4.8283 -0.1706 11 8 2.1313 -5.1750 0.7599 12 7 3.3548 -5.7520 -0.9984 13 6 4.2945 -5.4818 -2.0964 14 6 4.6012 -6.8312 -2.7796 15 6 3.3803 -7.7046 -2.3872 16 1 2.5356 -7.5155 -3.0496 17 6 3.7475 -9.1899 -2.3823 18 6 4.0636 -9.6419 -3.8094 19 7 4.4158 -11.0639 -3.8045 20 6 4.7401 -11.6930 -4.9768 21 1 4.7365 -11.1407 -5.9050 22 6 5.0733 -13.0405 -4.9723 23 7 5.0781 -13.7135 -3.8412 24 14 5.5163 -13.8985 -6.5714 25 1 6.9795 -13.7924 -6.8012 26 1 5.1308 -15.3301 -6.4882 27 1 4.7906 -13.2550 -7.6959 28 6 3.0898 -7.2014 -0.9489 29 6 4.3068 -2.9334 0.4407 30 6 4.7469 -1.5239 0.0249 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3632 -0.8899 0.5142 33 1 -0.3633 0.8901 0.5135 34 1 1.5451 -2.8382 1.0006 35 1 1.0673 -2.7100 -0.7122 36 1 3.8402 -4.7980 -2.8134 37 1 5.2123 -5.0473 -1.7003 38 1 4.6580 -6.7116 -3.8615 39 1 5.5255 -7.2588 -2.3911 40 1 4.6213 -9.3459 -1.7497 41 1 2.9101 -9.7700 -1.9945 42 1 3.1898 -9.4858 -4.4420 43 1 4.9011 -9.0618 -4.1971 44 1 4.4194 -11.5599 -2.9709 45 1 5.3113 -14.6550 -3.8379 46 1 3.7556 -7.6845 -0.2338 47 1 2.0488 -7.3879 -0.6851 48 1 4.0302 -2.9309 1.4950 49 1 5.1289 -3.6318 0.2833 50 1 5.1891 -1.5565 -0.9709 51 1 5.4760 -1.1408 0.7387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272546670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:01 Heat of formation + Delta-G solvation = 61.508493 kcal Electronic energy + Delta-G solvation = -30037.547370 eV Core-core repulsion = 25973.660550 eV Total energy + Delta-G solvation = -4063.886820 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.80318 -40.60116 -38.36419 -36.86015 -35.31847 -35.20208 -33.08144 -31.23169 -31.08128 -30.57283 -29.63304 -28.31793 -27.54799 -25.20381 -24.09692 -23.43400 -22.91202 -21.84885 -21.55729 -20.38061 -20.20123 -19.11734 -17.83426 -17.44233 -17.13914 -17.00557 -16.35284 -15.59602 -15.20327 -14.91473 -14.72599 -14.41996 -14.35488 -14.30512 -13.95746 -13.77212 -13.65543 -13.45533 -13.34383 -13.21453 -13.09520 -12.72019 -12.61838 -12.41434 -12.19048 -11.90265 -11.69546 -11.62581 -11.48712 -11.33623 -11.09744 -10.97430 -10.84500 -10.69131 -10.52758 -10.37275 -10.36020 -10.08734 -9.99339 -9.70438 -9.24100 -8.89462 -8.87141 -6.93889 -5.78230 -3.07065 1.14849 1.87753 2.15518 2.30854 2.66423 3.42007 3.46986 3.48911 3.67527 3.89095 4.11971 4.14799 4.31824 4.33812 4.42777 4.43544 4.49460 4.57602 4.70106 4.73827 4.74421 4.77507 4.94011 4.96507 5.02991 5.10205 5.20119 5.33411 5.35158 5.37482 5.50211 5.52667 5.57379 5.58171 5.61314 5.68556 5.74310 5.79569 5.84660 5.85762 6.03415 6.06810 6.13925 6.20398 6.32927 6.34801 6.80379 6.85142 7.24950 7.67732 7.85694 8.12538 8.40794 9.51721 10.10301 10.44310 11.44666 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.001607 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.532752 B =17420.561891 C =17593.971027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.283 5.283 3 N -0.097 5.097 4 N -0.261 5.261 5 C -0.020 4.020 6 C -0.015 4.015 7 C -0.030 4.030 8 C -0.097 4.097 9 H 0.098 0.902 10 C 0.535 3.465 11 O -0.540 6.540 12 N -0.615 5.615 13 C 0.097 3.903 14 C -0.128 4.128 15 C -0.093 4.093 16 H 0.085 0.915 17 C -0.116 4.116 18 C 0.155 3.845 19 N -0.735 5.735 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.109 3.891 29 C -0.107 4.107 30 C -0.030 4.030 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.016 0.984 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 27.796 8.852 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.075 5.075 3 N -0.075 5.075 4 N -0.125 5.125 5 C -0.160 4.160 6 C -0.149 4.149 7 C -0.069 4.069 8 C -0.119 4.119 9 H 0.116 0.884 10 C 0.323 3.677 11 O -0.417 6.417 12 N -0.349 5.349 13 C -0.026 4.026 14 C -0.165 4.165 15 C -0.113 4.113 16 H 0.103 0.897 17 C -0.154 4.154 18 C 0.027 3.973 19 N -0.379 5.379 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.013 4.013 29 C -0.146 4.146 30 C -0.069 4.069 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.105 0.895 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.360 29.239 9.216 31.528 hybrid contribution -0.030 -1.752 -0.732 1.899 sum -7.390 27.488 8.484 29.701 Atomic orbital electron populations 1.22319 0.72611 1.06140 1.05231 1.46836 1.09247 1.04543 1.46894 1.78602 0.96116 1.11216 1.21550 1.74810 1.09608 1.11892 1.16200 1.21689 0.94955 0.91395 1.07975 1.21727 0.91290 0.92070 1.09845 1.19987 0.97423 0.85081 1.04436 1.21276 0.96595 0.91296 1.02723 0.88353 1.20009 0.79388 0.86952 0.81348 1.90713 1.39132 1.81910 1.29961 1.48548 1.45938 1.08003 1.32365 1.22172 0.92632 0.98975 0.88783 1.22746 0.99195 0.93249 1.01356 1.22373 0.98137 0.95827 0.94979 0.89692 1.21672 1.01757 0.92585 0.99411 1.20620 0.96798 0.86941 0.92910 1.42372 1.82705 1.04783 1.08022 1.19228 1.38253 0.92405 0.87261 0.91211 1.24753 1.02645 0.96707 0.96959 1.69658 1.55268 1.08785 1.24490 0.86186 0.78150 0.78956 0.82879 1.21709 1.21754 1.20784 1.22426 1.02001 0.79169 0.97712 1.21568 0.96503 0.96143 1.00356 1.19943 0.92597 0.90987 1.03369 0.88838 0.88135 0.87807 0.87972 0.89744 0.91331 0.91144 0.89530 0.89925 0.91541 0.91518 0.96581 0.96265 0.78310 0.93505 0.90974 0.90413 0.90308 0.89874 0.89489 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.26 11.27 59.85 0.67 0.94 16 2 N -0.28 -2.34 3.73 -64.00 -0.24 -2.58 16 3 N -0.10 -1.10 13.19 60.35 0.80 -0.31 16 4 N -0.26 -3.17 12.40 33.16 0.41 -2.76 16 5 C -0.02 -0.19 7.11 -83.12 -0.59 -0.78 16 6 C -0.02 -0.13 6.76 -82.50 -0.56 -0.68 16 7 C -0.03 -0.20 5.06 -27.74 -0.14 -0.34 16 8 C -0.10 -0.68 2.11 -91.49 -0.19 -0.87 16 9 H 0.10 0.57 6.91 -51.93 -0.36 0.21 16 10 C 0.54 5.38 6.83 -10.98 -0.08 5.30 16 11 O -0.54 -7.36 16.35 5.56 0.09 -7.27 16 12 N -0.62 -5.88 3.32 -170.38 -0.57 -6.45 16 13 C 0.10 0.71 6.21 -3.06 -0.02 0.69 16 14 C -0.13 -1.16 5.59 -24.89 -0.14 -1.30 16 15 C -0.09 -1.01 3.09 -88.35 -0.27 -1.29 16 16 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.12 -1.67 4.84 -26.73 -0.13 -1.80 16 18 C 0.15 2.90 6.11 -4.04 -0.02 2.88 16 19 N -0.73 -18.26 5.60 -59.91 -0.34 -18.59 16 20 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 24 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.11 1.18 6.36 -2.41 -0.02 1.16 16 29 C -0.11 -0.68 5.18 -26.47 -0.14 -0.82 16 30 C -0.03 -0.20 6.30 -27.72 -0.17 -0.37 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 0.16 7.96 -51.93 -0.41 -0.25 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.78 7.51 -51.93 -0.39 0.39 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.41 7.63 -51.93 -0.40 0.01 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.75 8.13 -51.93 -0.42 0.33 16 39 H 0.08 0.80 8.02 -51.93 -0.42 0.38 16 40 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.02 0.36 7.51 -51.93 -0.39 -0.03 16 44 H 0.38 10.03 7.67 -40.82 -0.31 9.72 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 47 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 48 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 49 H 0.08 0.45 8.11 -51.92 -0.42 0.03 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 408.07 15.07 6.15 6.15 Total: -1.00 -36.06 408.07 -8.59 -44.65 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.55 Total: 1.93 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.04 Total: -4.60 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.79 Total: -58.00 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.09 Total: -7.27 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.06 -8.59 -44.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272546670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.157 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds