Wall clock time and date at job start Wed Apr 1 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.29109 * 126.00212 * 2 1 4 4 N 1.29021 * 110.25759 * 179.68048 * 3 2 1 5 5 C 1.32906 * 108.63349 * 359.97438 * 4 3 2 6 6 C 1.34390 * 126.00849 * 179.69138 * 2 1 3 7 7 C 1.50535 * 129.25498 * 0.49439 * 6 2 1 8 8 C 1.53437 * 108.32223 * 163.49280 * 7 6 2 9 9 H 1.08993 * 109.46429 * 289.70684 * 8 7 6 10 10 C 1.50706 * 109.45435 * 169.73879 * 8 7 6 11 11 O 1.21273 * 120.00258 * 325.93710 * 10 8 7 12 12 N 1.34781 * 119.99792 * 145.94373 * 10 8 7 13 13 C 1.47023 * 125.64493 * 4.99567 * 12 10 8 14 14 C 1.54329 * 107.26934 * 181.02387 * 13 12 10 15 15 C 1.55158 * 102.93680 * 22.19549 * 14 13 12 16 16 H 1.08997 * 111.00630 * 82.61535 * 15 14 13 17 17 C 1.53001 * 111.00131 * 206.41827 * 15 14 13 18 18 C 1.52998 * 109.47535 * 293.54923 * 17 15 14 19 19 N 1.46500 * 109.47239 * 179.97438 * 18 17 15 20 20 C 1.36931 * 120.00080 * 180.02562 * 19 18 17 21 21 H 1.08007 * 120.00287 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99880 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00469 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46801 * 89.99861 * 24 22 20 26 26 H 1.48489 * 109.46990 * 209.99890 * 24 22 20 27 27 H 1.48502 * 109.46793 * 329.99966 * 24 22 20 28 28 C 1.47419 * 125.64755 * 184.69403 * 12 10 8 29 29 C 1.53109 * 109.54653 * 49.71697 * 8 7 6 30 30 C 1.50600 * 129.16171 * 180.21078 * 5 4 3 31 31 H 1.09002 * 109.47176 * 90.02664 * 1 2 3 32 32 H 1.09002 * 109.46443 * 210.01955 * 1 2 3 33 33 H 1.08997 * 109.47173 * 330.01950 * 1 2 3 34 34 H 1.08999 * 109.69244 * 283.20597 * 7 6 2 35 35 H 1.09007 * 109.69356 * 43.78927 * 7 6 2 36 36 H 1.08995 * 109.88932 * 300.44558 * 13 12 10 37 37 H 1.08998 * 109.88260 * 61.46125 * 13 12 10 38 38 H 1.09000 * 110.71936 * 140.55389 * 14 13 12 39 39 H 1.08999 * 110.72003 * 263.65859 * 14 13 12 40 40 H 1.09000 * 109.46857 * 53.55363 * 17 15 14 41 41 H 1.09003 * 109.47348 * 173.54464 * 17 15 14 42 42 H 1.09000 * 109.47407 * 300.00103 * 18 17 15 43 43 H 1.09003 * 109.46796 * 59.99820 * 18 17 15 44 44 H 0.97003 * 120.00125 * 0.02562 * 19 18 17 45 45 H 0.96999 * 120.00543 * 180.02562 * 23 22 20 46 46 H 1.09000 * 110.36514 * 274.74288 * 28 12 10 47 47 H 1.09001 * 110.36978 * 37.06460 * 28 12 10 48 48 H 1.09001 * 109.45825 * 49.95993 * 29 8 7 49 49 H 1.09009 * 109.45192 * 169.88586 * 29 8 7 50 50 H 1.09004 * 109.68772 * 283.15115 * 30 5 4 51 51 H 1.08997 * 109.69487 * 43.72109 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2240 1.0445 0.0000 4 7 3.4658 0.6944 0.0068 5 6 3.5328 -0.6330 0.0120 6 6 2.2552 -1.0871 0.0059 7 6 1.8723 -2.5429 0.0036 8 6 3.1031 -3.3648 -0.4014 9 1 3.3199 -3.1981 -1.4564 10 6 2.8275 -4.8283 -0.1706 11 8 2.1313 -5.1750 0.7599 12 7 3.3548 -5.7520 -0.9984 13 6 4.2945 -5.4818 -2.0964 14 6 4.6012 -6.8312 -2.7796 15 6 3.3803 -7.7046 -2.3872 16 1 2.5356 -7.5155 -3.0496 17 6 3.7475 -9.1899 -2.3823 18 6 4.0636 -9.6419 -3.8094 19 7 4.4158 -11.0639 -3.8045 20 6 4.7401 -11.6930 -4.9768 21 1 4.7365 -11.1407 -5.9050 22 6 5.0733 -13.0405 -4.9723 23 7 5.0781 -13.7135 -3.8412 24 14 5.5163 -13.8985 -6.5714 25 1 6.9795 -13.7924 -6.8012 26 1 5.1308 -15.3301 -6.4882 27 1 4.7906 -13.2550 -7.6959 28 6 3.0898 -7.2014 -0.9489 29 6 4.3068 -2.9334 0.4407 30 6 4.7469 -1.5239 0.0249 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3632 -0.8899 0.5142 33 1 -0.3633 0.8901 0.5135 34 1 1.5451 -2.8382 1.0006 35 1 1.0673 -2.7100 -0.7122 36 1 3.8402 -4.7980 -2.8134 37 1 5.2123 -5.0473 -1.7003 38 1 4.6580 -6.7116 -3.8615 39 1 5.5255 -7.2588 -2.3911 40 1 4.6213 -9.3459 -1.7497 41 1 2.9101 -9.7700 -1.9945 42 1 3.1898 -9.4858 -4.4420 43 1 4.9011 -9.0618 -4.1971 44 1 4.4194 -11.5599 -2.9709 45 1 5.3113 -14.6550 -3.8379 46 1 3.7556 -7.6845 -0.2338 47 1 2.0488 -7.3879 -0.6851 48 1 4.0302 -2.9309 1.4950 49 1 5.1289 -3.6318 0.2833 50 1 5.1891 -1.5565 -0.9709 51 1 5.4760 -1.1408 0.7387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272546670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:00 Heat of formation + Delta-G solvation = 37.526109 kcal Electronic energy + Delta-G solvation = -30038.587324 eV Core-core repulsion = 25973.660550 eV Total energy + Delta-G solvation = -4064.926775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.45154 -41.36045 -39.18634 -37.54966 -36.79693 -35.89543 -34.52386 -32.67335 -31.60815 -31.42997 -30.54013 -28.94568 -28.65271 -26.23685 -25.23837 -24.43542 -23.61057 -23.02463 -22.40118 -21.21994 -21.01108 -19.81627 -19.10527 -18.48524 -18.00461 -17.63650 -17.23874 -16.67924 -16.29984 -15.98059 -15.57123 -15.37484 -15.25469 -15.14152 -14.89282 -14.78366 -14.61782 -14.35440 -14.14027 -13.92354 -13.83275 -13.67878 -13.29935 -13.14492 -13.05047 -12.95428 -12.82551 -12.73378 -12.57674 -12.31841 -12.20032 -12.14412 -12.01853 -11.88840 -11.60847 -11.56671 -11.50599 -11.44372 -10.96609 -10.89350 -10.81951 -9.89079 -9.64167 -8.96951 -7.93444 -5.22075 0.51629 1.38191 1.45501 1.49153 1.50806 1.58266 1.59211 1.94654 2.57995 3.10078 3.30847 3.40613 3.51611 3.64997 3.70869 3.75053 3.79148 3.82905 3.89288 4.11600 4.21015 4.22244 4.25308 4.35633 4.39521 4.43013 4.47182 4.51985 4.56116 4.61998 4.64859 4.68116 4.83748 4.84450 4.85946 4.90106 4.92381 5.00437 5.02729 5.06360 5.14061 5.19390 5.27887 5.30376 5.35944 5.42728 5.51218 5.52980 5.59894 6.29400 6.52487 7.10051 7.35231 7.43405 8.13446 8.34572 9.30254 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.001607 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.532752 B =17420.561891 C =17593.971027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.277 5.277 3 N -0.129 5.129 4 N -0.299 5.299 5 C -0.033 4.033 6 C -0.013 4.013 7 C -0.024 4.024 8 C -0.088 4.088 9 H 0.120 0.880 10 C 0.535 3.465 11 O -0.582 6.582 12 N -0.615 5.615 13 C 0.098 3.902 14 C -0.126 4.126 15 C -0.084 4.084 16 H 0.090 0.910 17 C -0.103 4.103 18 C 0.153 3.847 19 N -0.751 5.751 20 C -0.245 4.245 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.974 3.026 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.269 1.269 28 C 0.111 3.889 29 C -0.101 4.101 30 C -0.025 4.025 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.017 0.983 43 H 0.030 0.970 44 H 0.372 0.628 45 H 0.251 0.749 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.097 0.903 50 H 0.104 0.896 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 29.025 7.402 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.069 5.069 3 N -0.107 5.107 4 N -0.163 5.163 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.063 4.063 8 C -0.110 4.110 9 H 0.138 0.862 10 C 0.325 3.675 11 O -0.462 6.462 12 N -0.347 5.347 13 C -0.024 4.024 14 C -0.164 4.164 15 C -0.104 4.104 16 H 0.108 0.892 17 C -0.142 4.142 18 C 0.027 3.973 19 N -0.393 5.393 20 C -0.376 4.376 21 H 0.095 0.905 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.803 3.197 25 H -0.213 1.213 26 H -0.224 1.224 27 H -0.193 1.193 28 C -0.012 4.012 29 C -0.139 4.139 30 C -0.064 4.064 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.116 0.884 50 H 0.122 0.878 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.337 30.543 7.733 32.350 hybrid contribution -0.111 -2.113 -0.257 2.132 sum -7.448 28.430 7.476 30.325 Atomic orbital electron populations 1.22754 0.70127 1.07626 1.06926 1.47211 1.10673 1.03897 1.45162 1.78516 0.96419 1.12465 1.23251 1.74752 1.10334 1.13441 1.17728 1.22236 0.96533 0.90970 1.07661 1.21937 0.91065 0.92603 1.09226 1.19973 0.97927 0.83950 1.04473 1.21266 0.96816 0.88872 1.04062 0.86228 1.20485 0.78502 0.87986 0.80545 1.90700 1.41040 1.82677 1.31750 1.48613 1.46064 1.07233 1.32795 1.22336 0.93287 0.98316 0.88444 1.22746 0.97814 0.93757 1.02097 1.22203 0.99355 0.93501 0.95325 0.89167 1.21501 1.01187 0.94993 0.96478 1.20813 0.96867 0.83957 0.95644 1.42653 1.82740 1.07123 1.06819 1.19667 1.36748 0.92789 0.88437 0.90455 1.25594 1.03654 0.97677 1.00145 1.69818 1.57054 1.08694 1.26605 0.85133 0.77873 0.77300 0.79426 1.21321 1.22364 1.19344 1.22262 1.01200 0.80388 0.97338 1.21525 0.96650 0.96278 0.99489 1.20021 0.91656 0.90292 1.04456 0.86978 0.86200 0.86900 0.88843 0.88114 0.88971 0.88932 0.88679 0.90508 0.91947 0.92549 0.96463 0.95177 0.79615 0.94074 0.91660 0.91542 0.91560 0.88450 0.87785 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 11.27 127.77 1.44 1.76 16 2 N -0.28 -4.26 3.73 -356.40 -1.33 -5.59 16 3 N -0.13 -2.91 13.19 37.02 0.49 -2.42 16 4 N -0.30 -7.22 12.40 -48.99 -0.61 -7.83 16 5 C -0.03 -0.59 7.11 41.75 0.30 -0.29 16 6 C -0.01 -0.20 6.76 41.50 0.28 0.08 16 7 C -0.02 -0.28 5.06 29.94 0.15 -0.13 16 8 C -0.09 -1.00 2.11 -11.36 -0.02 -1.02 16 9 H 0.12 0.88 6.91 -2.39 -0.02 0.87 16 10 C 0.54 9.68 6.83 87.66 0.60 10.28 16 11 O -0.58 -15.38 16.35 -3.01 -0.05 -15.43 16 12 N -0.61 -10.26 3.32 -811.36 -2.70 -12.95 16 13 C 0.10 1.06 6.21 86.73 0.54 1.60 16 14 C -0.13 -1.93 5.59 31.79 0.18 -1.75 16 15 C -0.08 -1.68 3.09 -9.32 -0.03 -1.71 16 16 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 17 C -0.10 -2.90 4.84 30.59 0.15 -2.75 16 18 C 0.15 5.59 6.11 86.38 0.53 6.12 16 19 N -0.75 -37.30 5.60 -343.45 -1.92 -39.23 16 20 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 23 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 24 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 C 0.11 2.26 6.36 86.93 0.55 2.81 16 29 C -0.10 -1.04 5.18 30.77 0.16 -0.88 16 30 C -0.03 -0.28 6.30 29.95 0.19 -0.09 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 32 H 0.12 0.12 7.96 -2.39 -0.02 0.10 16 33 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.09 1.31 7.51 -2.39 -0.02 1.29 16 35 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.09 0.64 7.63 -2.39 -0.02 0.63 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 1.33 8.13 -2.39 -0.02 1.31 16 39 H 0.08 1.29 8.02 -2.39 -0.02 1.27 16 40 H 0.06 1.80 8.11 -2.39 -0.02 1.78 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.03 1.05 7.51 -2.39 -0.02 1.04 16 44 H 0.37 19.82 7.67 -92.71 -0.71 19.11 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.07 1.42 8.04 -2.39 -0.02 1.40 16 47 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 48 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 49 H 0.10 0.75 8.11 -2.38 -0.02 0.73 16 50 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 51 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -79.22 408.07 2.72 -76.50 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.22 Total: 20.90 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 6.32 Total: -2.58 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.79 Total: -126.86 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.05 Total: -15.43 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -79.22 2.72 -76.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272546670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.024 kcal (2) G-P(sol) polarization free energy of solvation -79.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds