Wall clock time and date at job start Wed Apr 1 2020 05:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29103 * 126.00924 * 2 1 4 4 N 1.29024 * 110.25962 * 180.02562 * 3 2 1 5 5 C 1.32899 * 108.63633 * 0.02569 * 4 3 2 6 6 C 1.34399 * 126.00559 * 179.97438 * 2 1 3 7 7 C 1.50535 * 129.25670 * 359.86373 * 6 2 1 8 8 C 1.53436 * 108.32507 * 196.51096 * 7 6 2 9 9 H 1.09001 * 109.44148 * 70.29062 * 8 7 6 10 10 C 1.50695 * 109.46034 * 190.24662 * 8 7 6 11 11 O 1.21285 * 119.99874 * 32.85590 * 10 8 7 12 12 N 1.34775 * 120.00618 * 212.85752 * 10 8 7 13 13 C 1.47020 * 125.65177 * 174.98172 * 12 10 8 14 14 C 1.54327 * 107.40222 * 181.01653 * 13 12 10 15 15 C 1.55551 * 102.75982 * 22.24033 * 14 13 12 16 16 H 1.09001 * 111.02281 * 82.56114 * 15 14 13 17 17 C 1.52994 * 111.00010 * 206.38628 * 15 14 13 18 18 C 1.53005 * 109.47054 * 287.21509 * 17 15 14 19 19 N 1.46503 * 109.46984 * 180.02562 * 18 17 15 20 20 C 1.36930 * 119.99833 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00280 * 359.97438 * 20 19 18 22 22 C 1.38820 * 120.00097 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00101 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47397 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47433 * 119.99788 * 24 22 20 27 27 H 1.48503 * 109.47107 * 239.99687 * 24 22 20 28 28 C 1.47425 * 125.64610 * 355.02588 * 12 10 8 29 29 C 1.53104 * 109.55474 * 310.27342 * 8 7 6 30 30 C 1.50595 * 129.16515 * 179.88614 * 5 4 3 31 31 H 1.09007 * 109.46844 * 270.01870 * 1 2 3 32 32 H 1.08992 * 109.46947 * 30.01750 * 1 2 3 33 33 H 1.08999 * 109.47275 * 150.02394 * 1 2 3 34 34 H 1.08991 * 109.69647 * 76.80252 * 7 6 2 35 35 H 1.09005 * 109.69622 * 316.21614 * 7 6 2 36 36 H 1.08991 * 109.88692 * 300.51485 * 13 12 10 37 37 H 1.09003 * 109.88131 * 61.52847 * 13 12 10 38 38 H 1.08994 * 110.72008 * 140.63148 * 14 13 12 39 39 H 1.09004 * 110.72177 * 263.91135 * 14 13 12 40 40 H 1.09001 * 109.47497 * 47.21494 * 17 15 14 41 41 H 1.08995 * 109.47236 * 167.21486 * 17 15 14 42 42 H 1.09004 * 109.47007 * 299.99784 * 18 17 15 43 43 H 1.08995 * 109.47118 * 59.99905 * 18 17 15 44 44 H 0.96998 * 120.00250 * 359.97438 * 19 18 17 45 45 H 0.96997 * 119.99449 * 180.02562 * 23 22 20 46 46 H 1.08998 * 110.36512 * 274.67885 * 28 12 10 47 47 H 1.09002 * 110.36847 * 36.88564 * 28 12 10 48 48 H 1.09000 * 109.45186 * 190.08344 * 29 8 7 49 49 H 1.08998 * 109.45375 * 310.01495 * 29 8 7 50 50 H 1.09005 * 109.69032 * 76.84746 * 30 5 4 51 51 H 1.08996 * 109.72492 * 316.28928 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0443 0.0000 4 7 3.4658 0.6941 -0.0005 5 6 3.5327 -0.6332 -0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8721 -2.5430 0.0039 8 6 3.1008 -3.3641 0.4170 9 1 3.3119 -3.1948 1.4729 10 6 2.8263 -4.8281 0.1884 11 8 2.1168 -5.1756 -0.7319 12 7 3.3690 -5.7514 1.0066 13 6 3.1033 -7.1967 0.9634 14 6 3.9207 -7.8504 2.0976 15 6 4.1594 -6.6650 3.0761 16 1 3.2976 -6.5151 3.7263 17 6 5.4319 -6.8803 3.8979 18 6 5.1874 -7.9741 4.9395 19 7 6.4056 -8.1797 5.7268 20 6 6.4255 -9.1165 6.7253 21 1 5.5429 -9.7036 6.9327 22 6 7.5800 -9.3118 7.4710 23 7 8.6557 -8.5968 7.2179 24 14 7.6068 -10.5893 8.8336 25 1 6.2809 -11.2528 8.9163 26 1 8.6510 -11.6037 8.5406 27 1 7.9098 -9.9265 10.1275 28 6 4.3269 -5.4791 2.0937 29 6 4.3089 -2.9350 -0.4199 30 6 4.7468 -1.5243 -0.0047 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5134 34 1 1.5502 -2.8405 -0.9940 35 1 1.0635 -2.7085 0.7159 36 1 2.0406 -7.3831 1.1175 37 1 3.4149 -7.6023 0.0008 38 1 3.3468 -8.6416 2.5799 39 1 4.8673 -8.2354 1.7183 40 1 6.2443 -7.1828 3.2372 41 1 5.7001 -5.9519 4.4021 42 1 4.3749 -7.6715 5.6002 43 1 4.9191 -8.9024 4.4353 44 1 7.1984 -7.6528 5.5403 45 1 9.4624 -8.7336 7.7387 46 1 5.3444 -5.4499 1.7042 47 1 4.0832 -4.5382 2.5872 48 1 5.1301 -3.6328 -0.2562 49 1 4.0377 -2.9353 -1.4756 50 1 5.1833 -1.5539 0.9937 51 1 5.4806 -1.1436 -0.7151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272546672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:05 Heat of formation + Delta-G solvation = 61.934578 kcal Electronic energy + Delta-G solvation = -30233.508546 eV Core-core repulsion = 26169.640202 eV Total energy + Delta-G solvation = -4063.868344 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.75554 -40.60116 -38.34483 -36.85496 -35.28485 -35.17266 -33.00665 -31.41584 -31.03610 -30.57490 -29.59880 -28.24970 -27.40337 -25.30722 -24.08868 -23.67918 -22.55424 -21.77818 -21.60574 -20.48686 -20.11307 -19.16035 -17.80633 -17.41763 -17.13286 -17.02920 -16.27323 -15.70615 -15.11845 -14.81358 -14.73774 -14.42500 -14.30639 -14.26428 -13.90401 -13.74124 -13.60363 -13.51106 -13.31008 -13.24924 -13.20702 -12.71459 -12.59606 -12.40860 -12.09772 -11.86703 -11.78215 -11.55021 -11.41152 -11.32027 -11.09192 -10.92954 -10.86147 -10.71558 -10.56263 -10.38634 -10.31568 -10.08903 -9.97636 -9.71650 -9.19215 -8.90717 -8.88170 -6.95059 -5.79588 -3.08264 1.19303 1.91815 2.20793 2.31479 2.66215 3.41159 3.46774 3.49058 3.71175 3.92342 4.15319 4.18261 4.34996 4.36006 4.38635 4.46393 4.54408 4.57965 4.69893 4.74161 4.76955 4.83331 4.98693 5.01984 5.07136 5.13652 5.21292 5.31924 5.40227 5.41340 5.46040 5.53621 5.57810 5.63593 5.64877 5.65517 5.72233 5.77244 5.88804 5.90236 6.01224 6.06850 6.18356 6.18928 6.30563 6.31393 6.78571 6.83052 7.23676 7.67562 7.85250 8.17539 8.39620 9.50691 10.08892 10.42898 11.43406 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.001842 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.169855 B =15193.244071 C =16032.625303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.284 5.284 3 N -0.097 5.097 4 N -0.260 5.260 5 C -0.018 4.018 6 C -0.017 4.017 7 C -0.029 4.029 8 C -0.099 4.099 9 H 0.100 0.900 10 C 0.536 3.464 11 O -0.543 6.543 12 N -0.614 5.614 13 C 0.107 3.893 14 C -0.127 4.127 15 C -0.094 4.094 16 H 0.086 0.914 17 C -0.116 4.116 18 C 0.154 3.846 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.098 3.902 29 C -0.107 4.107 30 C -0.031 4.031 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.288 14.031 -18.011 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.076 5.076 3 N -0.075 5.075 4 N -0.124 5.124 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.068 4.068 8 C -0.121 4.121 9 H 0.118 0.882 10 C 0.324 3.676 11 O -0.420 6.420 12 N -0.347 5.347 13 C -0.015 4.015 14 C -0.165 4.165 15 C -0.114 4.114 16 H 0.104 0.896 17 C -0.154 4.154 18 C 0.027 3.973 19 N -0.379 5.379 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C -0.024 4.024 29 C -0.145 4.145 30 C -0.070 4.070 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.096 0.904 50 H 0.107 0.893 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.778 15.362 -18.448 29.288 hybrid contribution 0.050 -1.584 0.875 1.810 sum -16.728 13.778 -17.573 27.901 Atomic orbital electron populations 1.22306 0.72678 1.06070 1.05213 1.46828 1.09213 1.04554 1.46956 1.78602 0.96131 1.11213 1.21538 1.74814 1.09563 1.11906 1.16162 1.21695 0.94952 0.91392 1.07804 1.21718 0.91299 0.92046 1.10001 1.19971 0.97407 0.85123 1.04316 1.21298 0.96653 0.91183 1.02922 0.88152 1.20019 0.79401 0.87016 0.81153 1.90702 1.38845 1.81948 1.30546 1.48535 1.44966 1.07721 1.33515 1.21986 1.00191 0.79684 0.99674 1.22841 1.00900 0.97885 0.94901 1.22402 0.99987 0.93431 0.95551 0.89593 1.21678 0.95457 1.00444 0.97826 1.20621 0.90673 0.94630 0.91397 1.42373 1.10504 1.45754 1.39252 1.19274 0.97161 1.12207 1.08419 0.91158 1.24757 0.96073 1.00103 1.00192 1.69666 1.02309 1.43131 1.43087 0.86117 0.77265 0.80933 0.81878 1.20567 1.21845 1.21859 1.22565 0.92974 0.99422 0.87448 1.21568 0.96433 0.96263 1.00248 1.19959 0.92595 0.90911 1.03549 0.88856 0.87830 0.88195 0.88053 0.89787 0.91508 0.91429 0.89564 0.90048 0.91477 0.91480 0.96555 0.96296 0.78313 0.93545 0.90537 0.90343 0.89803 0.90392 0.89313 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.27 59.85 0.67 0.96 16 2 N -0.28 -2.48 3.73 -64.00 -0.24 -2.71 16 3 N -0.10 -1.16 13.19 60.35 0.80 -0.36 16 4 N -0.26 -3.34 12.40 33.16 0.41 -2.93 16 5 C -0.02 -0.19 7.11 -83.13 -0.59 -0.78 16 6 C -0.02 -0.15 6.76 -82.49 -0.56 -0.70 16 7 C -0.03 -0.21 5.05 -27.74 -0.14 -0.35 16 8 C -0.10 -0.74 2.09 -91.49 -0.19 -0.93 16 9 H 0.10 0.66 6.43 -51.93 -0.33 0.33 16 10 C 0.54 5.40 6.84 -10.99 -0.08 5.32 16 11 O -0.54 -7.22 16.37 5.55 0.09 -7.13 16 12 N -0.61 -5.86 3.33 -170.53 -0.57 -6.43 16 13 C 0.11 1.03 6.86 -3.06 -0.02 1.01 16 14 C -0.13 -1.23 5.93 -24.68 -0.15 -1.38 16 15 C -0.09 -0.95 3.01 -88.26 -0.27 -1.22 16 16 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.12 -1.56 4.84 -26.73 -0.13 -1.69 16 18 C 0.15 2.84 6.16 -4.04 -0.02 2.82 16 19 N -0.73 -18.01 5.60 -59.90 -0.34 -18.35 16 20 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 24 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.10 0.83 6.20 -2.53 -0.02 0.82 16 29 C -0.11 -0.73 5.19 -26.45 -0.14 -0.87 16 30 C -0.03 -0.23 6.30 -27.71 -0.17 -0.40 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 0.18 7.96 -51.93 -0.41 -0.23 16 34 H 0.10 0.79 7.51 -51.93 -0.39 0.40 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 40 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 44 H 0.38 9.85 7.67 -40.82 -0.31 9.54 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.08 0.61 8.04 -51.93 -0.42 0.20 16 47 H 0.08 0.56 6.64 -51.93 -0.34 0.21 16 48 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 49 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 50 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 407.49 15.07 6.14 6.14 Total: -1.00 -35.84 407.49 -8.52 -44.36 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.48 Total: 2.11 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.04 Total: -4.66 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.79 Total: -57.90 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.09 Total: -7.13 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.84 -8.52 -44.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272546672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.295 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds