Wall clock time and date at job start Wed Apr 1 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29103 * 126.00924 * 2 1 4 4 N 1.29024 * 110.25962 * 180.02562 * 3 2 1 5 5 C 1.32899 * 108.63633 * 0.02569 * 4 3 2 6 6 C 1.34399 * 126.00559 * 179.97438 * 2 1 3 7 7 C 1.50535 * 129.25670 * 359.86373 * 6 2 1 8 8 C 1.53436 * 108.32507 * 196.51096 * 7 6 2 9 9 H 1.09001 * 109.44148 * 70.29062 * 8 7 6 10 10 C 1.50695 * 109.46034 * 190.24662 * 8 7 6 11 11 O 1.21285 * 119.99874 * 32.85590 * 10 8 7 12 12 N 1.34775 * 120.00618 * 212.85752 * 10 8 7 13 13 C 1.47020 * 125.65177 * 174.98172 * 12 10 8 14 14 C 1.54327 * 107.40222 * 181.01653 * 13 12 10 15 15 C 1.55551 * 102.75982 * 22.24033 * 14 13 12 16 16 H 1.09001 * 111.02281 * 82.56114 * 15 14 13 17 17 C 1.52994 * 111.00010 * 206.38628 * 15 14 13 18 18 C 1.53005 * 109.47054 * 287.21509 * 17 15 14 19 19 N 1.46503 * 109.46984 * 180.02562 * 18 17 15 20 20 C 1.36930 * 119.99833 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00280 * 359.97438 * 20 19 18 22 22 C 1.38820 * 120.00097 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99697 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00101 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47397 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47433 * 119.99788 * 24 22 20 27 27 H 1.48503 * 109.47107 * 239.99687 * 24 22 20 28 28 C 1.47425 * 125.64610 * 355.02588 * 12 10 8 29 29 C 1.53104 * 109.55474 * 310.27342 * 8 7 6 30 30 C 1.50595 * 129.16515 * 179.88614 * 5 4 3 31 31 H 1.09007 * 109.46844 * 270.01870 * 1 2 3 32 32 H 1.08992 * 109.46947 * 30.01750 * 1 2 3 33 33 H 1.08999 * 109.47275 * 150.02394 * 1 2 3 34 34 H 1.08991 * 109.69647 * 76.80252 * 7 6 2 35 35 H 1.09005 * 109.69622 * 316.21614 * 7 6 2 36 36 H 1.08991 * 109.88692 * 300.51485 * 13 12 10 37 37 H 1.09003 * 109.88131 * 61.52847 * 13 12 10 38 38 H 1.08994 * 110.72008 * 140.63148 * 14 13 12 39 39 H 1.09004 * 110.72177 * 263.91135 * 14 13 12 40 40 H 1.09001 * 109.47497 * 47.21494 * 17 15 14 41 41 H 1.08995 * 109.47236 * 167.21486 * 17 15 14 42 42 H 1.09004 * 109.47007 * 299.99784 * 18 17 15 43 43 H 1.08995 * 109.47118 * 59.99905 * 18 17 15 44 44 H 0.96998 * 120.00250 * 359.97438 * 19 18 17 45 45 H 0.96997 * 119.99449 * 180.02562 * 23 22 20 46 46 H 1.08998 * 110.36512 * 274.67885 * 28 12 10 47 47 H 1.09002 * 110.36847 * 36.88564 * 28 12 10 48 48 H 1.09000 * 109.45186 * 190.08344 * 29 8 7 49 49 H 1.08998 * 109.45375 * 310.01495 * 29 8 7 50 50 H 1.09005 * 109.69032 * 76.84746 * 30 5 4 51 51 H 1.08996 * 109.72492 * 316.28928 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2240 1.0443 0.0000 4 7 3.4658 0.6941 -0.0005 5 6 3.5327 -0.6332 -0.0015 6 6 2.2551 -1.0872 0.0005 7 6 1.8721 -2.5430 0.0039 8 6 3.1008 -3.3641 0.4170 9 1 3.3119 -3.1948 1.4729 10 6 2.8263 -4.8281 0.1884 11 8 2.1168 -5.1756 -0.7319 12 7 3.3690 -5.7514 1.0066 13 6 3.1033 -7.1967 0.9634 14 6 3.9207 -7.8504 2.0976 15 6 4.1594 -6.6650 3.0761 16 1 3.2976 -6.5151 3.7263 17 6 5.4319 -6.8803 3.8979 18 6 5.1874 -7.9741 4.9395 19 7 6.4056 -8.1797 5.7268 20 6 6.4255 -9.1165 6.7253 21 1 5.5429 -9.7036 6.9327 22 6 7.5800 -9.3118 7.4710 23 7 8.6557 -8.5968 7.2179 24 14 7.6068 -10.5893 8.8336 25 1 6.2809 -11.2528 8.9163 26 1 8.6510 -11.6037 8.5406 27 1 7.9098 -9.9265 10.1275 28 6 4.3269 -5.4791 2.0937 29 6 4.3089 -2.9350 -0.4199 30 6 4.7468 -1.5243 -0.0047 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5134 34 1 1.5502 -2.8405 -0.9940 35 1 1.0635 -2.7085 0.7159 36 1 2.0406 -7.3831 1.1175 37 1 3.4149 -7.6023 0.0008 38 1 3.3468 -8.6416 2.5799 39 1 4.8673 -8.2354 1.7183 40 1 6.2443 -7.1828 3.2372 41 1 5.7001 -5.9519 4.4021 42 1 4.3749 -7.6715 5.6002 43 1 4.9191 -8.9024 4.4353 44 1 7.1984 -7.6528 5.5403 45 1 9.4624 -8.7336 7.7387 46 1 5.3444 -5.4499 1.7042 47 1 4.0832 -4.5382 2.5872 48 1 5.1301 -3.6328 -0.2562 49 1 4.0377 -2.9353 -1.4756 50 1 5.1833 -1.5539 0.9937 51 1 5.4806 -1.1436 -0.7151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272546672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:04 Heat of formation + Delta-G solvation = 38.350949 kcal Electronic energy + Delta-G solvation = -30234.531209 eV Core-core repulsion = 26169.640202 eV Total energy + Delta-G solvation = -4064.891007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.45133 -41.36488 -39.16266 -37.57149 -36.76733 -35.89704 -34.43869 -32.67250 -31.72317 -31.57327 -30.45654 -28.73528 -28.69185 -26.10371 -25.54187 -24.51275 -23.36618 -23.04948 -22.40139 -21.27484 -20.94956 -19.86958 -19.10584 -18.46264 -18.02903 -17.72869 -17.08498 -16.70698 -16.41179 -15.83015 -15.59848 -15.36093 -15.25875 -15.15039 -14.89926 -14.78376 -14.57550 -14.33137 -14.14750 -14.04539 -13.79336 -13.67672 -13.28818 -13.18435 -13.06330 -13.01751 -12.79161 -12.67039 -12.57187 -12.29628 -12.19015 -12.12941 -11.98725 -11.89118 -11.62459 -11.57180 -11.51027 -11.40579 -10.96086 -10.89364 -10.81516 -9.89091 -9.65774 -8.95637 -7.93400 -5.21231 0.51700 1.38628 1.45471 1.49438 1.49550 1.57701 1.59641 1.94511 2.57940 3.09017 3.30568 3.40805 3.52543 3.57839 3.71214 3.76030 3.77171 3.88265 3.90370 4.11823 4.18993 4.23316 4.25303 4.32525 4.39919 4.43219 4.47146 4.54628 4.56192 4.62013 4.62769 4.72121 4.83611 4.85656 4.86424 4.93063 4.95391 4.99995 5.02736 5.05535 5.09458 5.18459 5.28919 5.29759 5.35108 5.46298 5.52196 5.55605 5.60440 6.30333 6.49507 7.09147 7.36304 7.43458 8.14930 8.36099 9.30356 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.001842 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.169855 B =15193.244071 C =16032.625303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.277 5.277 3 N -0.129 5.129 4 N -0.300 5.300 5 C -0.033 4.033 6 C -0.013 4.013 7 C -0.022 4.022 8 C -0.093 4.093 9 H 0.116 0.884 10 C 0.538 3.462 11 O -0.578 6.578 12 N -0.614 5.614 13 C 0.108 3.892 14 C -0.123 4.123 15 C -0.087 4.087 16 H 0.090 0.910 17 C -0.101 4.101 18 C 0.150 3.850 19 N -0.749 5.749 20 C -0.243 4.243 21 H 0.075 0.925 22 C -0.078 4.078 23 N -0.969 5.969 24 Si 0.971 3.029 25 H -0.266 1.266 26 H -0.294 1.294 27 H -0.294 1.294 28 C 0.102 3.898 29 C -0.100 4.100 30 C -0.028 4.028 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.017 0.983 43 H 0.022 0.978 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.069 0.931 50 H 0.100 0.900 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.629 13.631 -17.898 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.069 5.069 3 N -0.107 5.107 4 N -0.164 5.164 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.061 4.061 8 C -0.115 4.115 9 H 0.134 0.866 10 C 0.327 3.673 11 O -0.458 6.458 12 N -0.346 5.346 13 C -0.014 4.014 14 C -0.161 4.161 15 C -0.107 4.107 16 H 0.108 0.892 17 C -0.139 4.139 18 C 0.024 3.976 19 N -0.392 5.392 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.270 4.270 23 N -0.620 5.620 24 Si 0.800 3.200 25 H -0.190 1.190 26 H -0.221 1.221 27 H -0.221 1.221 28 C -0.020 4.020 29 C -0.138 4.138 30 C -0.066 4.066 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.040 0.960 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.114 0.886 49 H 0.088 0.912 50 H 0.118 0.882 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.170 14.977 -18.342 29.848 hybrid contribution 0.360 -1.494 0.795 1.730 sum -17.810 13.483 -17.547 28.406 Atomic orbital electron populations 1.22760 0.70066 1.07703 1.06898 1.47215 1.10692 1.03860 1.45148 1.78510 0.96396 1.12505 1.23260 1.74752 1.10375 1.13486 1.17740 1.22211 0.96551 0.90964 1.07700 1.21953 0.90988 0.92694 1.09186 1.19968 0.97816 0.83782 1.04570 1.21296 0.96930 0.89317 1.03909 0.86608 1.20374 0.78612 0.87839 0.80454 1.90692 1.40481 1.82601 1.32052 1.48583 1.44872 1.07603 1.33524 1.21946 1.00129 0.79963 0.99389 1.22795 1.00778 0.97785 0.94765 1.22268 0.98233 0.94593 0.95580 0.89164 1.21495 0.97118 0.98573 0.96752 1.20838 0.88339 0.96482 0.91937 1.42634 1.12084 1.45053 1.39421 1.19678 0.97072 1.12150 1.08575 0.90706 1.25560 0.96036 1.02519 1.02921 1.69810 1.02773 1.45007 1.44403 0.85103 0.77601 0.78466 0.78787 1.19049 1.22101 1.22134 1.22596 0.93268 0.99406 0.86753 1.21518 0.96576 0.96108 0.99636 1.20026 0.91777 0.90538 1.04305 0.87077 0.86874 0.86024 0.88529 0.88070 0.91533 0.91828 0.89455 0.90378 0.91679 0.91359 0.96467 0.95992 0.79407 0.94046 0.89621 0.88243 0.88628 0.91218 0.88201 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 11.27 127.77 1.44 1.80 16 2 N -0.28 -4.53 3.73 -356.41 -1.33 -5.86 16 3 N -0.13 -3.08 13.19 37.02 0.49 -2.59 16 4 N -0.30 -7.75 12.40 -48.99 -0.61 -8.36 16 5 C -0.03 -0.65 7.11 41.75 0.30 -0.35 16 6 C -0.01 -0.21 6.76 41.50 0.28 0.07 16 7 C -0.02 -0.27 5.05 29.94 0.15 -0.12 16 8 C -0.09 -1.15 2.09 -11.36 -0.02 -1.18 16 9 H 0.12 1.11 6.43 -2.39 -0.02 1.10 16 10 C 0.54 9.64 6.84 87.66 0.60 10.24 16 11 O -0.58 -14.54 16.37 -3.04 -0.05 -14.59 16 12 N -0.61 -10.17 3.33 -811.81 -2.70 -12.87 16 13 C 0.11 1.89 6.86 86.73 0.60 2.48 16 14 C -0.12 -2.14 5.93 31.92 0.19 -1.95 16 15 C -0.09 -1.55 3.01 -9.27 -0.03 -1.57 16 16 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 17 C -0.10 -2.54 4.84 30.59 0.15 -2.39 16 18 C 0.15 5.34 6.16 86.38 0.53 5.87 16 19 N -0.75 -36.41 5.60 -343.43 -1.92 -38.33 16 20 C -0.24 -13.24 9.99 84.04 0.84 -12.40 16 21 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 23 N -0.97 -58.28 13.06 21.65 0.28 -57.99 16 24 Si 0.97 45.32 29.55 68.60 2.03 47.35 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 27 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 28 C 0.10 1.40 6.20 86.85 0.54 1.94 16 29 C -0.10 -1.17 5.19 30.78 0.16 -1.01 16 30 C -0.03 -0.37 6.30 29.96 0.19 -0.18 16 31 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.12 0.14 7.96 -2.39 -0.02 0.12 16 34 H 0.10 1.34 7.51 -2.39 -0.02 1.32 16 35 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.43 7.93 -2.38 -0.02 1.41 16 40 H 0.06 1.68 7.98 -2.39 -0.02 1.66 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.02 0.78 7.75 -2.39 -0.02 0.76 16 44 H 0.37 19.27 7.67 -92.71 -0.71 18.56 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.09 1.08 8.04 -2.39 -0.02 1.07 16 47 H 0.10 1.00 6.64 -2.39 -0.02 0.99 16 48 H 0.10 0.92 8.11 -2.39 -0.02 0.90 16 49 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 50 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 51 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -77.74 407.49 2.78 -74.95 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.22 Total: 21.00 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 6.38 Total: -2.71 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.79 Total: -126.00 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.05 Total: -14.59 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -77.74 2.78 -74.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272546672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.305 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds