Wall clock time and date at job start Wed Apr 1 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35490 * 126.98071 * 2 1 4 4 N 1.30528 * 107.30818 * 179.97438 * 3 2 1 5 5 N 1.28600 * 109.66987 * 359.73355 * 4 3 2 6 6 C 1.30522 * 109.67224 * 0.44248 * 5 4 3 7 7 C 1.50702 * 126.34274 * 179.82483 * 6 5 4 8 8 N 1.46506 * 109.47206 * 269.69229 * 7 6 5 9 9 C 1.46910 * 124.35085 * 90.00035 * 8 7 6 10 10 C 1.53852 * 105.34809 * 163.55182 * 9 8 7 11 11 C 1.53958 * 102.45362 * 24.71926 * 10 9 8 12 12 C 1.34502 * 124.34981 * 269.97932 * 8 7 6 13 13 O 1.21276 * 124.94930 * 0.37931 * 12 8 7 14 14 C 1.52236 * 110.58016 * 266.88674 * 10 9 8 15 15 C 1.53241 * 109.42431 * 179.28900 * 14 10 9 16 16 C 1.53138 * 109.06145 * 56.42590 * 15 14 10 17 17 C 1.53039 * 109.33799 * 301.66149 * 16 15 14 18 18 N 1.45966 * 110.73672 * 142.82000 * 10 9 8 19 19 C 1.46900 * 110.99933 * 307.32253 * 18 10 9 20 20 C 1.52998 * 109.47220 * 177.59833 * 19 18 10 21 21 C 1.50695 * 109.46968 * 185.61622 * 20 19 18 22 22 H 1.07997 * 120.00479 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99833 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00162 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00083 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47287 * 89.99812 * 25 23 21 27 27 H 1.48503 * 109.47221 * 209.99998 * 25 23 21 28 28 H 1.48503 * 109.47150 * 330.00017 * 25 23 21 29 29 H 1.08994 * 109.47118 * 269.99723 * 1 2 3 30 30 H 1.08991 * 109.47059 * 30.00314 * 1 2 3 31 31 H 1.09000 * 109.47039 * 150.00050 * 1 2 3 32 32 H 1.07996 * 126.34644 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46933 * 149.69389 * 7 6 5 34 34 H 1.08994 * 109.47215 * 29.69164 * 7 6 5 35 35 H 1.08998 * 110.27097 * 44.58321 * 9 8 7 36 36 H 1.08996 * 110.26939 * 282.51376 * 9 8 7 37 37 H 1.08995 * 110.51062 * 94.52140 * 11 10 9 38 38 H 1.09008 * 110.50985 * 217.22478 * 11 10 9 39 39 H 1.08997 * 109.48119 * 59.30037 * 14 10 9 40 40 H 1.08999 * 109.48762 * 299.28291 * 14 10 9 41 41 H 1.08992 * 109.53884 * 296.54456 * 15 14 10 42 42 H 1.09005 * 109.60578 * 176.34002 * 15 14 10 43 43 H 1.08996 * 109.48827 * 181.70556 * 16 15 14 44 44 H 1.08992 * 109.51507 * 61.63145 * 16 15 14 45 45 H 1.09001 * 109.46880 * 299.83513 * 17 16 15 46 46 H 1.09002 * 109.46900 * 179.83889 * 17 16 15 47 47 H 1.09002 * 109.47162 * 57.59452 * 19 18 10 48 48 H 1.09004 * 109.47029 * 297.59987 * 19 18 10 49 49 H 1.09004 * 109.46791 * 305.61594 * 20 19 18 50 50 H 1.09002 * 109.46873 * 65.61390 * 20 19 18 51 51 H 0.96996 * 120.00166 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0823 0.0000 4 7 3.5091 0.6429 0.0006 5 7 3.5091 -0.6431 0.0065 6 6 2.2800 -1.0824 0.0006 7 6 1.8477 -2.5261 0.0008 8 7 1.7081 -2.9942 -1.3804 9 6 2.7909 -3.6071 -2.1615 10 6 2.0963 -4.3014 -3.3457 11 6 0.7863 -3.5033 -3.4766 12 6 0.5718 -2.9185 -2.0962 13 8 -0.4724 -2.4505 -1.6946 14 6 1.8036 -5.7583 -3.0151 15 6 1.0971 -6.4187 -4.2038 16 6 1.9685 -6.2623 -5.4534 17 6 2.2153 -4.7750 -5.7161 18 7 2.8986 -4.1797 -4.5591 19 6 3.2500 -2.7773 -4.8193 20 6 4.1386 -2.6964 -6.0622 21 6 4.6118 -1.2781 -6.2499 22 1 4.3087 -0.5109 -5.5528 23 6 5.4316 -0.9597 -7.3118 24 7 5.8011 -1.8939 -8.1605 25 14 6.0176 0.7986 -7.5449 26 1 7.2982 0.9940 -6.8189 27 1 6.2232 1.0642 -8.9915 28 1 4.9973 1.7355 -7.0097 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9702 2.1169 0.0004 33 1 0.8907 -2.6187 0.5143 34 1 2.5958 -3.1293 0.5149 35 1 3.3260 -4.3386 -1.5559 36 1 3.4766 -2.8406 -2.5226 37 1 0.8951 -2.7091 -4.2151 38 1 -0.0385 -4.1641 -3.7437 39 1 1.1612 -5.8096 -2.1361 40 1 2.7389 -6.2802 -2.8125 41 1 0.1334 -5.9368 -4.3686 42 1 0.9443 -7.4778 -3.9962 43 1 1.4585 -6.7032 -6.3098 44 1 2.9217 -6.7673 -5.2980 45 1 1.2619 -4.2708 -5.8740 46 1 2.8379 -4.6613 -6.6036 47 1 3.7871 -2.3722 -3.9617 48 1 2.3407 -2.1995 -4.9845 49 1 4.9995 -3.3531 -5.9367 50 1 3.5684 -3.0081 -6.9373 51 1 6.3776 -1.6699 -8.9077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:52 Heat of formation + Delta-G solvation = 62.549228 kcal Electronic energy + Delta-G solvation = -32594.204311 eV Core-core repulsion = 28530.362620 eV Total energy + Delta-G solvation = -4063.841691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.19246 -41.31782 -38.65817 -36.12791 -35.14510 -34.40514 -33.24499 -32.48839 -30.69348 -29.25192 -28.67491 -27.87986 -27.19827 -25.57918 -24.94402 -23.36788 -22.48710 -21.60460 -21.25151 -20.33694 -19.66711 -18.61961 -17.32555 -17.24724 -16.51935 -16.40378 -16.02125 -15.65601 -15.19975 -15.05087 -14.81690 -14.58360 -14.43064 -14.18573 -14.03658 -13.91796 -13.55867 -13.09765 -13.05826 -12.84009 -12.65242 -12.57676 -12.41167 -12.12006 -12.00187 -11.59083 -11.53441 -11.27967 -11.10055 -10.94923 -10.68319 -10.60657 -10.45066 -10.41764 -10.30073 -10.16822 -10.02179 -9.83846 -9.41004 -9.36466 -9.15275 -8.89378 -8.34318 -7.84861 -6.01173 -4.03237 1.55820 2.26710 2.48171 2.62788 3.09052 3.33587 3.39681 3.43226 3.93250 4.10039 4.32739 4.35918 4.46501 4.53817 4.57842 4.66337 4.74610 4.81233 4.87821 5.00332 5.06220 5.18751 5.20967 5.30842 5.35499 5.40671 5.45748 5.48884 5.61070 5.67779 5.73112 5.74784 5.88589 5.92369 5.98237 5.99446 6.02230 6.12727 6.20298 6.26947 6.33568 6.46784 6.51965 6.69802 6.84270 6.90665 7.37262 7.48222 7.71331 7.83205 7.95175 8.02366 8.40123 8.65521 9.03049 9.61070 11.10040 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007469 B = 0.004612 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.148937 B = 6069.652074 C = 9001.273894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.465 5.465 3 C 0.150 3.850 4 N -0.294 5.294 5 N -0.275 5.275 6 C 0.147 3.853 7 C 0.215 3.785 8 N -0.610 5.610 9 C 0.103 3.897 10 C 0.110 3.890 11 C -0.190 4.190 12 C 0.528 3.472 13 O -0.541 6.541 14 C -0.099 4.099 15 C -0.121 4.121 16 C -0.117 4.117 17 C 0.054 3.946 18 N -0.517 5.517 19 C 0.054 3.946 20 C 0.029 3.971 21 C -0.521 4.521 22 H 0.052 0.948 23 C 0.061 3.939 24 N -0.893 5.893 25 Si 0.890 3.110 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.275 1.275 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.217 0.783 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.029 0.971 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.020 0.980 49 H 0.028 0.972 50 H 0.017 0.983 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 -6.034 15.736 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.155 5.155 3 C -0.138 4.138 4 N -0.134 5.134 5 N -0.117 5.117 6 C -0.121 4.121 7 C 0.090 3.910 8 N -0.343 5.343 9 C -0.019 4.019 10 C 0.018 3.982 11 C -0.231 4.231 12 C 0.317 3.683 13 O -0.420 6.420 14 C -0.136 4.136 15 C -0.158 4.158 16 C -0.155 4.155 17 C -0.073 4.073 18 N -0.241 5.241 19 C -0.072 4.072 20 C -0.008 4.008 21 C -0.560 4.560 22 H 0.070 0.930 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.718 3.282 26 H -0.205 1.205 27 H -0.212 1.212 28 H -0.200 1.200 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.234 0.766 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.038 0.962 49 H 0.046 0.954 50 H 0.035 0.965 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.519 -6.059 15.925 21.143 hybrid contribution -1.804 1.876 -0.386 2.631 sum -14.323 -4.183 15.539 21.543 Atomic orbital electron populations 1.22579 0.74885 1.07612 1.04179 1.46197 1.09505 1.06598 1.53189 1.26485 0.87293 0.95034 1.04987 1.74293 1.17986 1.03180 1.17922 1.74275 1.16816 1.03357 1.17246 1.25314 0.87723 0.92800 1.06294 1.19518 1.03353 0.84935 0.83173 1.48395 1.12658 1.60377 1.12919 1.22493 0.89285 0.98283 0.91841 1.21303 0.89804 0.94967 0.92083 1.23156 1.01811 1.02640 0.95539 1.21060 0.82491 0.77146 0.87561 1.90510 1.28571 1.47457 1.75417 1.21439 1.01271 0.93178 0.97762 1.21631 0.98613 1.00188 0.95375 1.21613 1.00242 0.96637 0.97026 1.22162 0.97201 0.93621 0.94353 1.61819 1.41112 1.19750 1.01380 1.22567 0.98288 0.84589 1.01728 1.19116 0.94432 0.97021 0.90262 1.21138 1.29919 0.94350 1.10609 0.92962 1.24944 0.96094 0.97099 0.95882 1.69954 1.35740 1.32552 1.14934 0.86630 0.79326 0.85119 0.77171 1.20481 1.21219 1.20015 0.90280 0.89305 0.86090 0.76625 0.88184 0.86433 0.89344 0.88601 0.87027 0.87795 0.91870 0.90302 0.92333 0.91842 0.91807 0.90917 0.95254 0.88834 0.91164 0.96172 0.95371 0.96458 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.42 10.89 59.85 0.65 1.07 16 2 N -0.46 -5.42 3.15 -122.69 -0.39 -5.80 16 3 C 0.15 1.84 12.74 -89.94 -1.15 0.69 16 4 N -0.29 -4.83 12.21 29.69 0.36 -4.47 16 5 N -0.28 -4.53 12.21 32.80 0.40 -4.13 16 6 C 0.15 1.95 7.61 -154.98 -1.18 0.77 16 7 C 0.22 2.21 6.10 -5.19 -0.03 2.18 16 8 N -0.61 -7.23 2.92 -173.97 -0.51 -7.74 16 9 C 0.10 1.30 6.38 -3.38 -0.02 1.28 16 10 C 0.11 1.39 0.60 -131.55 -0.08 1.31 16 11 C -0.19 -2.46 4.58 -27.02 -0.12 -2.58 16 12 C 0.53 6.99 8.03 -10.75 -0.09 6.90 16 13 O -0.54 -7.88 14.56 5.56 0.08 -7.80 16 14 C -0.10 -1.02 4.75 -27.00 -0.13 -1.14 16 15 C -0.12 -1.20 5.80 -26.54 -0.15 -1.35 16 16 C -0.12 -1.38 6.07 -26.64 -0.16 -1.54 16 17 C 0.05 0.81 4.95 -3.77 -0.02 0.79 16 18 N -0.52 -8.19 4.56 -218.94 -1.00 -9.19 16 19 C 0.05 1.07 4.31 -3.83 -0.02 1.05 16 20 C 0.03 0.72 4.50 -27.89 -0.13 0.60 16 21 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 22 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 25 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.12 1.28 4.48 -51.93 -0.23 1.05 16 32 H 0.22 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.10 0.86 7.64 -51.93 -0.40 0.46 16 34 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.94 7.88 -51.93 -0.41 0.53 16 36 H 0.10 1.51 5.27 -51.93 -0.27 1.23 16 37 H 0.11 1.67 5.70 -51.93 -0.30 1.38 16 38 H 0.10 1.22 6.24 -51.92 -0.32 0.90 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.03 0.43 7.21 -51.93 -0.37 0.06 16 46 H 0.09 1.64 6.14 -51.93 -0.32 1.32 16 47 H 0.07 1.44 5.59 -51.93 -0.29 1.15 16 48 H 0.02 0.41 6.09 -51.93 -0.32 0.09 16 49 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.02 0.45 6.59 -51.93 -0.34 0.11 16 51 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -34.18 388.44 -10.20 -44.38 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.68 Total: 1.00 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -3.03 Total: -3.28 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.39 Total: -57.10 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.08 Total: -7.80 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.18 -10.20 -44.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.926 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds