Wall clock time and date at job start Wed Apr 1 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35490 * 126.98071 * 2 1 4 4 N 1.30528 * 107.30818 * 179.97438 * 3 2 1 5 5 N 1.28600 * 109.66987 * 359.73355 * 4 3 2 6 6 C 1.30522 * 109.67224 * 0.44248 * 5 4 3 7 7 C 1.50702 * 126.34274 * 179.82483 * 6 5 4 8 8 N 1.46506 * 109.47206 * 269.69229 * 7 6 5 9 9 C 1.46910 * 124.35085 * 90.00035 * 8 7 6 10 10 C 1.53852 * 105.34809 * 163.55182 * 9 8 7 11 11 C 1.53958 * 102.45362 * 24.71926 * 10 9 8 12 12 C 1.34502 * 124.34981 * 269.97932 * 8 7 6 13 13 O 1.21276 * 124.94930 * 0.37931 * 12 8 7 14 14 C 1.52236 * 110.58016 * 266.88674 * 10 9 8 15 15 C 1.53241 * 109.42431 * 179.28900 * 14 10 9 16 16 C 1.53138 * 109.06145 * 56.42590 * 15 14 10 17 17 C 1.53039 * 109.33799 * 301.66149 * 16 15 14 18 18 N 1.45966 * 110.73672 * 142.82000 * 10 9 8 19 19 C 1.46900 * 110.99933 * 307.32253 * 18 10 9 20 20 C 1.52998 * 109.47220 * 177.59833 * 19 18 10 21 21 C 1.50695 * 109.46968 * 185.61622 * 20 19 18 22 22 H 1.07997 * 120.00479 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99833 * 179.97438 * 21 20 19 24 24 N 1.31514 * 120.00162 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00083 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47287 * 89.99812 * 25 23 21 27 27 H 1.48503 * 109.47221 * 209.99998 * 25 23 21 28 28 H 1.48503 * 109.47150 * 330.00017 * 25 23 21 29 29 H 1.08994 * 109.47118 * 269.99723 * 1 2 3 30 30 H 1.08991 * 109.47059 * 30.00314 * 1 2 3 31 31 H 1.09000 * 109.47039 * 150.00050 * 1 2 3 32 32 H 1.07996 * 126.34644 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46933 * 149.69389 * 7 6 5 34 34 H 1.08994 * 109.47215 * 29.69164 * 7 6 5 35 35 H 1.08998 * 110.27097 * 44.58321 * 9 8 7 36 36 H 1.08996 * 110.26939 * 282.51376 * 9 8 7 37 37 H 1.08995 * 110.51062 * 94.52140 * 11 10 9 38 38 H 1.09008 * 110.50985 * 217.22478 * 11 10 9 39 39 H 1.08997 * 109.48119 * 59.30037 * 14 10 9 40 40 H 1.08999 * 109.48762 * 299.28291 * 14 10 9 41 41 H 1.08992 * 109.53884 * 296.54456 * 15 14 10 42 42 H 1.09005 * 109.60578 * 176.34002 * 15 14 10 43 43 H 1.08996 * 109.48827 * 181.70556 * 16 15 14 44 44 H 1.08992 * 109.51507 * 61.63145 * 16 15 14 45 45 H 1.09001 * 109.46880 * 299.83513 * 17 16 15 46 46 H 1.09002 * 109.46900 * 179.83889 * 17 16 15 47 47 H 1.09002 * 109.47162 * 57.59452 * 19 18 10 48 48 H 1.09004 * 109.47029 * 297.59987 * 19 18 10 49 49 H 1.09004 * 109.46791 * 305.61594 * 20 19 18 50 50 H 1.09002 * 109.46873 * 65.61390 * 20 19 18 51 51 H 0.96996 * 120.00166 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0823 0.0000 4 7 3.5091 0.6429 0.0006 5 7 3.5091 -0.6431 0.0065 6 6 2.2800 -1.0824 0.0006 7 6 1.8477 -2.5261 0.0008 8 7 1.7081 -2.9942 -1.3804 9 6 2.7909 -3.6071 -2.1615 10 6 2.0963 -4.3014 -3.3457 11 6 0.7863 -3.5033 -3.4766 12 6 0.5718 -2.9185 -2.0962 13 8 -0.4724 -2.4505 -1.6946 14 6 1.8036 -5.7583 -3.0151 15 6 1.0971 -6.4187 -4.2038 16 6 1.9685 -6.2623 -5.4534 17 6 2.2153 -4.7750 -5.7161 18 7 2.8986 -4.1797 -4.5591 19 6 3.2500 -2.7773 -4.8193 20 6 4.1386 -2.6964 -6.0622 21 6 4.6118 -1.2781 -6.2499 22 1 4.3087 -0.5109 -5.5528 23 6 5.4316 -0.9597 -7.3118 24 7 5.8011 -1.8939 -8.1605 25 14 6.0176 0.7986 -7.5449 26 1 7.2982 0.9940 -6.8189 27 1 6.2232 1.0642 -8.9915 28 1 4.9973 1.7355 -7.0097 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9702 2.1169 0.0004 33 1 0.8907 -2.6187 0.5143 34 1 2.5958 -3.1293 0.5149 35 1 3.3260 -4.3386 -1.5559 36 1 3.4766 -2.8406 -2.5226 37 1 0.8951 -2.7091 -4.2151 38 1 -0.0385 -4.1641 -3.7437 39 1 1.1612 -5.8096 -2.1361 40 1 2.7389 -6.2802 -2.8125 41 1 0.1334 -5.9368 -4.3686 42 1 0.9443 -7.4778 -3.9962 43 1 1.4585 -6.7032 -6.3098 44 1 2.9217 -6.7673 -5.2980 45 1 1.2619 -4.2708 -5.8740 46 1 2.8379 -4.6613 -6.6036 47 1 3.7871 -2.3722 -3.9617 48 1 2.3407 -2.1995 -4.9845 49 1 4.9995 -3.3531 -5.9367 50 1 3.5684 -3.0081 -6.9373 51 1 6.3776 -1.6699 -8.9077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:51 Heat of formation + Delta-G solvation = 41.366980 kcal Electronic energy + Delta-G solvation = -32595.122842 eV Core-core repulsion = 28530.362620 eV Total energy + Delta-G solvation = -4064.760222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.17452 -42.39042 -39.77443 -37.17522 -36.09845 -35.95974 -34.45330 -34.09714 -31.73682 -30.95353 -29.78379 -28.70685 -28.13023 -26.96195 -26.26598 -24.89043 -23.45865 -22.64661 -22.28984 -21.87012 -20.72683 -19.66231 -18.71747 -18.20570 -18.05066 -17.41845 -17.17360 -16.67238 -16.56145 -16.27452 -16.16112 -15.95902 -15.60241 -15.21994 -15.09251 -14.93366 -14.45921 -14.35003 -14.22062 -14.11069 -13.87421 -13.69741 -13.43290 -13.37616 -13.15181 -13.04736 -12.85648 -12.65071 -12.59149 -12.49979 -12.20034 -11.92890 -11.69583 -11.46036 -11.42747 -11.36821 -11.22210 -11.13759 -11.04132 -10.99368 -10.55195 -10.41734 -9.95609 -9.18405 -8.23354 -6.33225 0.62261 1.28596 1.35087 1.37031 1.46703 1.59734 1.63132 2.09007 2.36236 2.79188 3.10290 3.20879 3.31213 3.46700 3.65195 3.67577 3.74931 3.81276 3.96513 4.04341 4.18246 4.25313 4.29269 4.30659 4.31029 4.42892 4.47700 4.53052 4.59123 4.63533 4.66467 4.68023 4.79569 4.83475 4.94867 4.96722 5.08944 5.10406 5.11971 5.13825 5.27125 5.31431 5.36226 5.42833 5.54134 5.66069 5.76845 5.82821 5.86347 6.08714 6.28109 6.33248 6.82536 6.93179 7.35405 7.63710 8.88262 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007469 B = 0.004612 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3748.148937 B = 6069.652074 C = 9001.273894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.465 5.465 3 C 0.159 3.841 4 N -0.348 5.348 5 N -0.320 5.320 6 C 0.145 3.855 7 C 0.213 3.787 8 N -0.602 5.602 9 C 0.106 3.894 10 C 0.112 3.888 11 C -0.186 4.186 12 C 0.528 3.472 13 O -0.552 6.552 14 C -0.093 4.093 15 C -0.115 4.115 16 C -0.111 4.111 17 C 0.054 3.946 18 N -0.521 5.521 19 C 0.077 3.923 20 C 0.040 3.960 21 C -0.544 4.544 22 H 0.047 0.953 23 C 0.010 3.990 24 N -0.925 5.925 25 Si 0.955 3.045 26 H -0.274 1.274 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.256 0.744 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.030 0.970 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.014 0.986 49 H -0.002 1.002 50 H -0.001 1.001 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.035 -6.570 17.454 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.155 5.155 3 C -0.129 4.129 4 N -0.188 5.188 5 N -0.161 5.161 6 C -0.125 4.125 7 C 0.089 3.911 8 N -0.335 5.335 9 C -0.016 4.016 10 C 0.021 3.979 11 C -0.228 4.228 12 C 0.317 3.683 13 O -0.431 6.431 14 C -0.131 4.131 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.074 4.074 18 N -0.244 5.244 19 C -0.050 4.050 20 C 0.003 3.997 21 C -0.582 4.582 22 H 0.065 0.935 23 C -0.188 4.188 24 N -0.565 5.565 25 Si 0.780 3.220 26 H -0.199 1.199 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.272 0.728 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.032 0.968 49 H 0.017 0.983 50 H 0.017 0.983 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.549 -6.606 17.657 23.813 hybrid contribution -1.216 2.066 -0.931 2.572 sum -15.765 -4.539 16.726 23.428 Atomic orbital electron populations 1.22755 0.72824 1.07553 1.06037 1.46443 1.10650 1.06007 1.52397 1.27214 0.86389 0.96668 1.02671 1.74174 1.20524 1.03602 1.20461 1.74155 1.18948 1.03817 1.19203 1.25776 0.87288 0.94224 1.05190 1.19870 1.05217 0.83611 0.82381 1.48345 1.11814 1.59860 1.13442 1.22400 0.89088 0.97730 0.92423 1.21437 0.89084 0.97103 0.90259 1.23092 1.02439 1.02163 0.95074 1.21019 0.82666 0.77089 0.87533 1.90517 1.29064 1.47947 1.75608 1.21461 1.02131 0.90693 0.98790 1.21626 0.98050 1.01835 0.93759 1.21575 1.00785 0.93489 0.98987 1.22143 0.96154 0.96294 0.92775 1.61715 1.42855 1.16797 1.03061 1.22070 0.96859 0.87344 0.98752 1.18898 0.93889 0.94894 0.92061 1.21525 1.30313 0.95657 1.10720 0.93490 1.25785 0.96148 1.01350 0.95543 1.70065 1.36303 1.34631 1.15452 0.85607 0.78838 0.80020 0.77568 1.19927 1.20104 1.19480 0.87460 0.87601 0.87793 0.72776 0.85889 0.84311 0.86771 0.92213 0.89541 0.86145 0.89612 0.89781 0.91812 0.89259 0.90376 0.91425 0.95132 0.92499 0.92064 0.96754 0.98346 0.98274 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.71 10.89 127.77 1.39 2.10 16 2 N -0.47 -10.12 3.15 -542.08 -1.71 -11.83 16 3 C 0.16 3.73 12.74 180.11 2.30 6.03 16 4 N -0.35 -11.57 12.21 -59.99 -0.73 -12.30 16 5 N -0.32 -10.68 12.21 -50.15 -0.61 -11.29 16 6 C 0.15 3.72 7.61 137.98 1.05 4.77 16 7 C 0.21 3.96 6.10 85.63 0.52 4.48 16 8 N -0.60 -13.33 2.92 -822.87 -2.40 -15.74 16 9 C 0.11 2.58 6.38 86.59 0.55 3.14 16 10 C 0.11 2.72 0.60 4.06 0.00 2.73 16 11 C -0.19 -4.63 4.58 30.41 0.14 -4.49 16 12 C 0.53 13.11 8.03 87.93 0.71 13.81 16 13 O -0.55 -15.00 14.56 -3.02 -0.04 -15.05 16 14 C -0.09 -1.63 4.75 30.42 0.14 -1.48 16 15 C -0.12 -1.91 5.80 30.72 0.18 -1.73 16 16 C -0.11 -2.44 6.07 30.65 0.19 -2.25 16 17 C 0.05 1.65 4.95 86.30 0.43 2.08 16 18 N -0.52 -16.90 4.56 -846.58 -3.86 -20.75 16 19 C 0.08 3.20 4.31 86.30 0.37 3.57 16 20 C 0.04 2.11 4.50 29.85 0.13 2.25 16 21 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 22 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 23 C 0.01 0.61 5.46 84.66 0.46 1.07 16 24 N -0.92 -56.51 13.29 21.45 0.28 -56.22 16 25 Si 0.95 45.82 29.54 68.60 2.03 47.84 16 26 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 29 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.96 4.48 -2.39 -0.01 1.95 16 32 H 0.26 3.37 8.06 -2.91 -0.02 3.34 16 33 H 0.12 1.74 7.64 -2.39 -0.02 1.72 16 34 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.11 2.19 7.88 -2.39 -0.02 2.17 16 36 H 0.06 1.94 5.27 -2.39 -0.01 1.93 16 37 H 0.09 2.64 5.70 -2.39 -0.01 2.62 16 38 H 0.12 2.56 6.24 -2.38 -0.01 2.55 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.03 6.57 -2.39 -0.02 1.01 16 42 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.03 0.92 7.21 -2.39 -0.02 0.90 16 46 H 0.06 2.14 6.14 -2.39 -0.01 2.13 16 47 H 0.06 2.67 5.59 -2.39 -0.01 2.66 16 48 H 0.01 0.61 6.09 -2.39 -0.01 0.60 16 49 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 50 H 0.00 -0.06 6.59 -2.39 -0.02 -0.07 16 51 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -78.40 388.44 2.70 -75.70 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.95 Total: 15.15 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 8.80 Total: 4.49 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -9.03 Total: -128.14 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.04 Total: -15.05 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -78.40 2.70 -75.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.063 kcal (2) G-P(sol) polarization free energy of solvation -78.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds