Wall clock time and date at job start Wed Apr 1 2020 06:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35499 * 126.97801 * 2 1 4 4 N 1.30521 * 107.30726 * 180.26401 * 3 2 1 5 5 N 1.28608 * 109.66927 * 359.55770 * 4 3 2 6 6 C 1.30515 * 109.67240 * 0.45107 * 5 4 3 7 7 C 1.50698 * 126.34493 * 179.72519 * 6 5 4 8 8 N 1.46496 * 109.47203 * 270.00085 * 7 6 5 9 9 C 1.33332 * 117.36655 * 269.73501 * 8 7 6 10 10 O 1.21279 * 118.67303 * 0.29721 * 9 8 7 11 11 C 1.50306 * 122.64570 * 180.02562 * 9 8 7 12 12 C 1.52924 * 109.48643 * 339.62902 * 11 9 8 13 13 C 1.53103 * 109.18812 * 51.94099 * 12 11 9 14 14 H 1.08997 * 112.34420 * 60.03237 * 13 12 11 15 15 C 1.44812 * 117.36207 * 90.00300 * 8 7 6 16 16 H 1.09006 * 110.01109 * 44.43700 * 15 8 7 17 17 C 1.54363 * 110.63466 * 282.64115 * 15 8 7 18 18 C 1.54261 * 104.82508 * 217.40481 * 17 15 8 19 19 N 1.48051 * 106.83587 * 358.54711 * 18 17 15 20 20 C 1.46901 * 111.00095 * 146.61580 * 19 18 17 21 21 C 1.53008 * 109.46979 * 184.19039 * 20 19 18 22 22 C 1.52998 * 109.46957 * 185.06207 * 21 20 19 23 23 C 1.50691 * 109.47193 * 179.97438 * 22 21 20 24 24 H 1.08008 * 119.99897 * 0.02562 * 23 22 21 25 25 C 1.37880 * 120.00070 * 180.02562 * 23 22 21 26 26 N 1.31508 * 119.99925 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99720 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47762 * 359.97438 * 27 25 23 29 29 H 1.48504 * 109.47140 * 120.00131 * 27 25 23 30 30 H 1.48504 * 109.46908 * 239.99629 * 27 25 23 31 31 H 1.09006 * 109.47196 * 90.02353 * 1 2 3 32 32 H 1.08996 * 109.47567 * 210.02855 * 1 2 3 33 33 H 1.09002 * 109.47512 * 330.02956 * 1 2 3 34 34 H 1.08003 * 126.35105 * 359.97438 * 3 2 1 35 35 H 1.09001 * 109.47221 * 30.00870 * 7 6 5 36 36 H 1.09005 * 109.47117 * 150.00253 * 7 6 5 37 37 H 1.09002 * 109.59813 * 219.52757 * 11 9 8 38 38 H 1.08995 * 109.30019 * 99.54556 * 11 9 8 39 39 H 1.09004 * 109.51424 * 292.02638 * 12 11 9 40 40 H 1.08994 * 109.51571 * 171.85247 * 12 11 9 41 41 H 1.09004 * 110.36704 * 336.23608 * 17 15 8 42 42 H 1.08994 * 110.37087 * 98.56756 * 17 15 8 43 43 H 1.08996 * 109.98661 * 117.88994 * 18 17 15 44 44 H 1.09001 * 109.98678 * 239.19737 * 18 17 15 45 45 H 1.09001 * 109.46756 * 304.18674 * 20 19 18 46 46 H 1.08994 * 109.47012 * 64.18416 * 20 19 18 47 47 H 1.08996 * 109.46635 * 305.05931 * 21 20 19 48 48 H 1.09000 * 109.47066 * 65.06546 * 21 20 19 49 49 H 1.09001 * 109.46966 * 300.00030 * 22 21 20 50 50 H 1.09006 * 109.46704 * 59.99597 * 22 21 20 51 51 H 0.96999 * 120.00117 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5090 0.6431 -0.0057 5 7 3.5090 -0.6430 0.0000 6 6 2.2800 -1.0823 0.0001 7 6 1.8477 -2.5260 0.0000 8 7 1.7076 -2.9938 -1.3811 9 6 0.5132 -2.8547 -1.9571 10 8 -0.3854 -2.3490 -1.3187 11 6 0.2372 -3.2940 -3.3678 12 6 1.5560 -3.4098 -4.1333 13 6 2.5265 -4.2839 -3.3344 14 1 2.1396 -5.2896 -3.1707 15 6 2.8759 -3.5753 -2.0086 16 1 3.3670 -4.2618 -1.3189 17 6 3.8622 -2.4727 -2.4495 18 6 4.4401 -2.9728 -3.7895 19 7 3.8313 -4.2967 -4.0515 20 6 3.6383 -4.5117 -5.4919 21 6 2.9142 -5.8407 -5.7167 22 6 2.8251 -6.1254 -7.2173 23 6 2.1125 -7.4346 -7.4387 24 1 1.7581 -8.0062 -6.5936 25 6 1.9128 -7.9027 -8.7201 26 7 2.3447 -7.2069 -9.7491 27 14 1.0288 -9.5252 -8.9945 28 1 0.6467 -10.1088 -7.6836 29 1 -0.1917 -9.2926 -9.8080 30 1 1.9291 -10.4645 -9.7104 31 1 -0.3634 -0.0004 -1.0277 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 1.9701 2.1171 -0.0004 35 1 2.5960 -3.1294 0.5140 36 1 0.8908 -2.6187 0.5139 37 1 -0.4054 -2.5635 -3.8592 38 1 -0.2604 -4.2636 -3.3523 39 1 1.9866 -2.4176 -4.2689 40 1 1.3733 -3.8646 -5.1068 41 1 3.3367 -1.5284 -2.5919 42 1 4.6572 -2.3581 -1.7128 43 1 4.1810 -2.2789 -4.5891 44 1 5.5233 -3.0688 -3.7155 45 1 3.0410 -3.6982 -5.9037 46 1 4.6082 -4.5377 -5.9885 47 1 3.4664 -6.6426 -5.2269 48 1 1.9096 -5.7825 -5.2976 49 1 2.2729 -5.3233 -7.7071 50 1 3.8297 -6.1835 -7.6363 51 1 2.2039 -7.5360 -10.6506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274042099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:49 Heat of formation + Delta-G solvation = 57.647008 kcal Electronic energy + Delta-G solvation = -32138.411293 eV Core-core repulsion = 28074.357026 eV Total energy + Delta-G solvation = -4064.054267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.40298 -41.34809 -39.03582 -36.09229 -35.29236 -34.10884 -33.58358 -32.32509 -31.17826 -29.76691 -28.35761 -27.93712 -27.05745 -26.14397 -24.13151 -23.30289 -22.59200 -22.03216 -21.28369 -20.58622 -19.86960 -18.25974 -17.52351 -17.11011 -16.95765 -16.64977 -16.32101 -15.92550 -15.55180 -15.31146 -14.87703 -14.83808 -14.53696 -14.38867 -14.01018 -13.71307 -13.56177 -13.12731 -12.91027 -12.84754 -12.61122 -12.47965 -12.36898 -11.99627 -11.76667 -11.74769 -11.64160 -11.45078 -11.26219 -11.00208 -10.90809 -10.82691 -10.61396 -10.53651 -10.44594 -10.41676 -9.96773 -9.72717 -9.48864 -9.37479 -9.17778 -9.07262 -8.37269 -8.24788 -6.02200 -4.04345 1.41229 2.14326 2.35473 2.45406 2.87784 3.29258 3.37136 3.40836 3.93398 3.98881 4.23118 4.28772 4.34370 4.36764 4.45032 4.51082 4.60796 4.75853 4.80334 4.95181 5.01928 5.03788 5.12402 5.20333 5.22829 5.25070 5.28715 5.33992 5.56137 5.59565 5.63905 5.67257 5.67690 5.76104 5.83061 5.90705 5.95036 5.99112 6.15205 6.19684 6.26037 6.52785 6.57596 6.72440 6.90539 7.09873 7.15467 7.24841 7.65528 7.77301 7.79445 7.97958 8.40753 8.46200 9.03141 9.60020 11.09222 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.002449 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.591933 B =11431.270516 C =12147.359349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.463 5.463 3 C 0.145 3.855 4 N -0.297 5.297 5 N -0.279 5.279 6 C 0.158 3.842 7 C 0.191 3.809 8 N -0.585 5.585 9 C 0.524 3.476 10 O -0.558 6.558 11 C -0.130 4.130 12 C -0.157 4.157 13 C 0.065 3.935 14 H 0.110 0.890 15 C 0.143 3.857 16 H 0.102 0.898 17 C -0.131 4.131 18 C 0.034 3.966 19 N -0.506 5.506 20 C 0.044 3.956 21 C -0.107 4.107 22 C 0.022 3.978 23 C -0.518 4.518 24 H 0.055 0.945 25 C 0.056 3.944 26 N -0.896 5.896 27 Si 0.890 3.110 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.284 1.284 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.216 0.784 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.047 0.953 49 H 0.013 0.987 50 H 0.016 0.984 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 15.012 21.057 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.153 5.153 3 C -0.142 4.142 4 N -0.138 5.138 5 N -0.121 5.121 6 C -0.111 4.111 7 C 0.065 3.935 8 N -0.317 5.317 9 C 0.315 3.685 10 O -0.438 6.438 11 C -0.170 4.170 12 C -0.195 4.195 13 C -0.044 4.044 14 H 0.128 0.872 15 C 0.038 3.962 16 H 0.119 0.881 17 C -0.170 4.170 18 C -0.094 4.094 19 N -0.229 5.229 20 C -0.084 4.084 21 C -0.145 4.145 22 C -0.015 4.015 23 C -0.556 4.556 24 H 0.073 0.927 25 C -0.145 4.145 26 N -0.535 5.535 27 Si 0.718 3.282 28 H -0.197 1.197 29 H -0.211 1.211 30 H -0.210 1.210 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.232 0.768 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.054 0.946 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.066 0.934 49 H 0.031 0.969 50 H 0.034 0.966 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.198 14.832 21.319 26.064 hybrid contribution -2.393 0.079 -0.806 2.526 sum -4.590 14.911 20.512 25.771 Atomic orbital electron populations 1.22197 0.74387 1.04693 1.04979 1.46225 1.09705 1.06551 1.52849 1.26449 0.87336 0.95023 1.05438 1.74270 1.18008 1.03319 1.18166 1.74260 1.16867 1.03187 1.17788 1.25200 0.87522 0.92765 1.05594 1.19737 1.03803 0.85079 0.84849 1.47095 1.10972 1.59966 1.13642 1.20412 0.81263 0.77347 0.89518 1.90630 1.43552 1.45080 1.64498 1.21590 0.99618 1.04619 0.91193 1.22330 0.94750 1.01108 1.01346 1.23004 0.90641 0.99224 0.91542 0.87207 1.21728 0.84602 0.94823 0.95016 0.88051 1.22803 0.99118 0.97553 0.97568 1.22937 1.00460 0.90121 0.95885 1.65115 1.18049 1.28408 1.11364 1.22534 1.01049 0.99059 0.85723 1.21702 0.98054 0.94027 1.00716 1.19066 0.97133 0.96468 0.88880 1.21266 1.36665 1.05676 0.91997 0.92655 1.25025 0.95890 0.97289 0.96293 1.69968 1.46793 1.38378 0.98385 0.86565 0.79444 0.83961 0.78209 1.19728 1.21075 1.21010 0.89527 0.88265 0.89795 0.76763 0.86778 0.87594 0.88130 0.87571 0.91492 0.88409 0.91952 0.89524 0.93866 0.90007 0.94591 0.90714 0.92384 0.93422 0.96900 0.96567 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 9.46 59.84 0.57 1.07 16 2 N -0.46 -4.10 3.15 -122.69 -0.39 -4.49 16 3 C 0.15 1.31 12.74 -89.94 -1.15 0.17 16 4 N -0.30 -3.75 12.21 29.69 0.36 -3.39 16 5 N -0.28 -3.52 11.26 32.79 0.37 -3.16 16 6 C 0.16 1.63 6.81 -154.99 -1.06 0.57 16 7 C 0.19 1.63 5.49 -5.20 -0.03 1.60 16 8 N -0.59 -5.61 2.44 -167.66 -0.41 -6.02 16 9 C 0.52 5.58 7.47 -11.82 -0.09 5.49 16 10 O -0.56 -6.49 12.71 5.56 0.07 -6.42 16 11 C -0.13 -1.33 6.07 -28.11 -0.17 -1.50 16 12 C -0.16 -1.81 3.88 -26.72 -0.10 -1.91 16 13 C 0.06 0.75 2.52 -65.85 -0.17 0.59 16 14 H 0.11 1.33 7.66 -51.93 -0.40 0.93 16 15 C 0.14 1.43 3.20 -67.42 -0.22 1.22 16 16 H 0.10 0.93 7.98 -51.93 -0.41 0.52 16 17 C -0.13 -1.44 4.67 -25.36 -0.12 -1.56 16 18 C 0.03 0.41 5.98 -2.53 -0.02 0.40 16 19 N -0.51 -6.79 5.34 -222.35 -1.19 -7.98 16 20 C 0.04 0.69 4.31 -3.82 -0.02 0.68 16 21 C -0.11 -2.05 4.60 -26.73 -0.12 -2.17 16 22 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 23 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 24 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 25 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 26 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 27 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 28 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 30 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 31 H 0.09 0.66 7.36 -51.93 -0.38 0.27 16 32 H 0.10 0.66 6.34 -51.93 -0.33 0.33 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.22 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.11 0.80 7.88 -51.93 -0.41 0.39 16 36 H 0.11 0.83 6.22 -51.93 -0.32 0.51 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.81 6.57 -51.93 -0.34 0.46 16 40 H 0.10 1.31 5.43 -51.93 -0.28 1.02 16 41 H 0.06 0.79 7.73 -51.93 -0.40 0.38 16 42 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 43 H 0.04 0.54 7.36 -51.93 -0.38 0.15 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.04 0.57 6.14 -51.93 -0.32 0.25 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.05 0.87 6.10 -51.93 -0.32 0.55 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -32.96 387.97 -10.91 -43.87 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -8.06 Total: -0.71 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -3.23 Total: -8.04 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.52 Total: -50.87 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: 0.07 Total: -6.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.96 -10.91 -43.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274042099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.520 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds