Wall clock time and date at job start Wed Apr 1 2020 05:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28720 * 125.86332 * 2 1 4 4 N 1.28634 * 110.17356 * 180.23870 * 3 2 1 5 5 C 1.33775 * 108.88827 * 359.75580 * 4 3 2 6 6 C 1.35309 * 125.87247 * 179.82675 * 2 1 3 7 7 C 1.50707 * 126.90843 * 0.03087 * 6 2 1 8 8 N 1.46894 * 109.47065 * 274.71253 * 7 6 2 9 9 C 1.46866 * 110.99831 * 170.00181 * 8 7 6 10 10 C 1.53138 * 109.44691 * 186.35533 * 9 8 7 11 11 C 1.52543 * 109.31923 * 301.72764 * 10 9 8 12 12 C 1.54126 * 110.08411 * 178.11080 * 11 10 9 13 13 C 1.54594 * 101.65077 * 143.30142 * 12 11 10 14 14 N 1.46817 * 105.49553 * 335.01992 * 13 12 11 15 15 C 1.46500 * 124.36211 * 196.92308 * 14 13 12 16 16 C 1.53006 * 109.46998 * 89.99797 * 15 14 13 17 17 C 1.50699 * 109.46866 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47494 * 119.99680 * 21 19 17 24 24 H 1.48505 * 109.47047 * 239.99860 * 21 19 17 25 25 C 1.34577 * 111.27702 * 17.18106 * 14 13 12 26 26 O 1.21280 * 125.02866 * 179.02726 * 25 14 13 27 27 C 1.52539 * 110.49347 * 56.31083 * 11 10 9 28 28 C 1.46850 * 111.00081 * 294.35633 * 8 7 6 29 29 H 1.09003 * 109.46837 * 270.17613 * 1 2 3 30 30 H 1.08991 * 109.47235 * 30.17533 * 1 2 3 31 31 H 1.09000 * 109.46947 * 150.17285 * 1 2 3 32 32 H 1.07994 * 126.75181 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.46388 * 154.71001 * 7 6 2 34 34 H 1.09001 * 109.46694 * 34.71545 * 7 6 2 35 35 H 1.09001 * 109.46993 * 66.36767 * 9 8 7 36 36 H 1.08995 * 109.47545 * 306.35569 * 9 8 7 37 37 H 1.08996 * 109.49962 * 181.77380 * 10 9 8 38 38 H 1.09008 * 109.49598 * 61.68145 * 10 9 8 39 39 H 1.08996 * 110.99463 * 25.21114 * 12 11 10 40 40 H 1.09004 * 110.99313 * 261.38991 * 12 11 10 41 41 H 1.09003 * 110.23944 * 216.01734 * 13 12 11 42 42 H 1.08998 * 110.31512 * 94.06555 * 13 12 11 43 43 H 1.09000 * 109.47175 * 329.99929 * 15 14 13 44 44 H 1.09001 * 109.47297 * 209.99436 * 15 14 13 45 45 H 1.08993 * 109.46955 * 300.00226 * 16 15 14 46 46 H 1.09000 * 109.47050 * 60.00054 * 16 15 14 47 47 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.50194 * 63.66019 * 27 11 10 49 49 H 1.08999 * 109.49741 * 183.75122 * 27 11 10 50 50 H 1.09001 * 109.47315 * 293.64943 * 28 8 7 51 51 H 1.09000 * 109.47653 * 53.65665 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0432 0.0000 4 7 3.4575 0.6953 -0.0050 5 6 3.5322 -0.6403 -0.0031 6 6 2.2579 -1.0964 0.0033 7 6 1.8118 -2.5359 0.0070 8 7 1.5576 -2.9662 1.3883 9 6 0.8985 -4.2784 1.4180 10 6 0.5080 -4.6204 2.8587 11 6 1.7571 -4.6170 3.7344 12 6 1.3776 -4.9129 5.1987 13 6 2.5766 -5.7703 5.6647 14 7 3.1222 -6.3779 4.4445 15 6 4.0275 -7.5295 4.4278 16 6 3.2091 -8.8205 4.3583 17 6 4.1404 -10.0052 4.3417 18 1 5.2090 -9.8526 4.3767 19 6 3.6283 -11.2839 4.2808 20 7 2.3270 -11.4697 4.2377 21 14 4.7825 -12.7524 4.2610 22 1 6.1886 -12.2777 4.3179 23 1 4.5036 -13.6172 5.4355 24 1 4.5732 -13.5297 3.0130 25 6 2.6879 -5.7370 3.3437 26 8 2.9973 -6.0202 2.2057 27 6 2.4718 -3.2727 3.6400 28 6 2.7983 -2.9743 2.1738 29 1 -0.3633 0.0032 1.0277 30 1 -0.3633 0.8883 -0.5165 31 1 -0.3633 -0.8915 -0.5111 32 1 4.4322 -1.2372 -0.0058 33 1 2.5920 -3.1591 -0.4300 34 1 0.8976 -2.6344 -0.5784 35 1 1.5822 -5.0370 1.0369 36 1 0.0040 -4.2499 0.7959 37 1 0.0472 -5.6077 2.8862 38 1 -0.1987 -3.8781 3.2300 39 1 0.4478 -5.4790 5.2544 40 1 1.3077 -3.9921 5.7777 41 1 2.2409 -6.5451 6.3540 42 1 3.3286 -5.1418 6.1417 43 1 4.6312 -7.5304 5.3353 44 1 4.6803 -7.4660 3.5571 45 1 2.5564 -8.8841 5.2288 46 1 2.6055 -8.8197 3.4508 47 1 1.9667 -12.3692 4.1952 48 1 1.8262 -2.4887 4.0359 49 1 3.3953 -3.3103 4.2179 50 1 3.4682 -3.7423 1.7871 51 1 3.2814 -2.0000 2.1001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274130018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:29 Heat of formation + Delta-G solvation = 67.431848 kcal Electronic energy + Delta-G solvation = -31619.349996 eV Core-core repulsion = 27555.720032 eV Total energy + Delta-G solvation = -4063.629965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.46166 -41.06208 -38.12387 -36.13813 -35.09085 -34.61795 -33.18496 -31.86733 -31.01316 -30.29206 -28.58207 -28.19265 -26.74730 -25.18202 -24.16990 -23.49416 -22.69771 -21.88526 -21.41643 -20.71150 -20.19656 -18.31814 -17.44688 -17.06225 -16.69297 -16.12265 -15.82687 -15.48845 -15.38175 -15.07288 -14.74268 -14.50142 -14.40765 -14.15592 -13.59968 -13.57655 -13.36693 -13.33217 -13.14823 -12.87165 -12.67544 -12.54428 -12.30539 -12.19065 -12.05301 -11.88870 -11.71967 -11.54112 -11.31928 -11.16573 -11.00640 -10.98245 -10.71469 -10.44875 -10.40436 -10.23504 -10.03261 -9.91165 -9.43048 -9.34447 -9.12009 -8.42341 -8.37429 -8.05262 -6.07067 -4.10508 1.33800 2.15082 2.36892 2.98255 3.27224 3.34574 3.38323 3.52006 3.74052 4.08016 4.25681 4.33441 4.41608 4.45122 4.59419 4.61811 4.67953 4.76833 4.90060 4.96496 5.02568 5.11978 5.20476 5.21541 5.29300 5.31386 5.36093 5.42124 5.54858 5.60165 5.67490 5.72136 5.74679 5.78767 5.88244 5.95759 5.95990 5.97091 6.01332 6.10959 6.22510 6.33506 6.42413 6.76108 6.78984 6.88934 6.96843 7.47315 7.62568 7.81032 7.92662 8.28996 8.31444 8.64437 8.96437 9.53889 11.04347 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.002269 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.381316 B =12339.790763 C =12629.235620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.280 5.280 3 N -0.093 5.093 4 N -0.272 5.272 5 C -0.048 4.048 6 C 0.000 4.000 7 C 0.124 3.876 8 N -0.533 5.533 9 C 0.043 3.957 10 C -0.088 4.088 11 C -0.095 4.095 12 C -0.125 4.125 13 C 0.100 3.900 14 N -0.610 5.610 15 C 0.127 3.873 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.523 3.477 26 O -0.530 6.530 27 C -0.088 4.088 28 C 0.048 3.952 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.186 0.814 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.016 0.984 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.053 0.947 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.176 21.531 -3.357 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.074 5.074 3 N -0.072 5.072 4 N -0.137 5.137 5 C -0.206 4.206 6 C -0.133 4.133 7 C -0.006 4.006 8 N -0.258 5.258 9 C -0.084 4.084 10 C -0.126 4.126 11 C -0.098 4.098 12 C -0.162 4.162 13 C -0.023 4.023 14 N -0.342 5.342 15 C 0.007 3.993 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.309 3.691 26 O -0.407 6.407 27 C -0.127 4.127 28 C -0.080 4.080 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.204 0.796 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.035 0.965 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.379 23.056 -3.738 24.495 hybrid contribution 0.868 -2.773 -0.149 2.909 sum -6.511 20.283 -3.887 21.654 Atomic orbital electron populations 1.22223 0.72787 1.05344 1.05307 1.47139 1.09340 1.04435 1.46496 1.78297 0.96667 1.11806 1.20450 1.75082 1.09607 1.12458 1.16517 1.23395 0.97213 0.91993 1.08046 1.22056 0.91052 0.91582 1.08659 1.20444 1.01599 0.87129 0.91378 1.61985 1.25074 1.28886 1.09850 1.22316 0.99111 0.89567 0.97432 1.21344 0.95392 1.02059 0.93848 1.21067 0.96643 0.95482 0.96632 1.22679 0.98690 1.00542 0.94329 1.22052 0.95127 0.96826 0.88332 1.48594 1.47771 1.31474 1.06379 1.21798 0.91605 0.84566 1.01296 1.19392 0.95579 0.89857 0.97650 1.21122 0.93050 0.90813 1.51057 0.92446 1.25004 0.95087 0.99121 0.95089 1.69981 1.11090 1.21732 1.50365 0.86499 0.81085 0.82572 0.77631 1.19649 1.20963 1.20933 1.20425 0.81011 0.82756 0.84869 1.90617 1.60452 1.69245 1.20410 1.21357 1.00376 0.94642 0.96291 1.22202 0.90917 1.01435 0.93451 0.88737 0.88411 0.88440 0.79645 0.91289 0.89452 0.91001 0.91040 0.90861 0.90629 0.89810 0.89486 0.90152 0.91678 0.91711 0.91193 0.96518 0.96176 0.92976 0.90416 0.91221 0.92921 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 11.22 59.85 0.67 1.09 16 2 N -0.28 -2.66 3.74 -63.79 -0.24 -2.90 16 3 N -0.09 -1.16 13.17 60.35 0.79 -0.36 16 4 N -0.27 -3.63 12.41 30.23 0.38 -3.25 16 5 C -0.05 -0.53 10.84 -17.74 -0.19 -0.72 16 6 C 0.00 0.00 5.72 -82.09 -0.47 -0.47 16 7 C 0.12 1.06 5.20 -4.98 -0.03 1.04 16 8 N -0.53 -5.24 4.63 -235.96 -1.09 -6.33 16 9 C 0.04 0.47 5.24 -3.77 -0.02 0.45 16 10 C -0.09 -0.98 4.78 -26.89 -0.13 -1.10 16 11 C -0.09 -1.14 0.55 -155.50 -0.09 -1.23 16 12 C -0.12 -1.29 6.21 -25.31 -0.16 -1.45 16 13 C 0.10 1.28 7.35 -3.03 -0.02 1.26 16 14 N -0.61 -10.54 2.94 -172.46 -0.51 -11.04 16 15 C 0.13 2.63 5.88 -4.04 -0.02 2.60 16 16 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 17 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 C 0.52 8.88 6.32 -11.03 -0.07 8.81 16 26 O -0.53 -10.75 13.82 5.56 0.08 -10.68 16 27 C -0.09 -0.94 4.76 -26.89 -0.13 -1.06 16 28 C 0.05 0.53 5.08 -3.78 -0.02 0.51 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.30 7.22 -51.93 -0.37 -0.07 16 32 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.09 0.58 7.15 -51.93 -0.37 0.21 16 35 H 0.07 1.03 5.79 -51.93 -0.30 0.73 16 36 H 0.07 0.64 8.01 -51.93 -0.42 0.23 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 39 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 40 H 0.09 0.68 7.87 -51.93 -0.41 0.27 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.53 7.92 -51.93 -0.41 1.11 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.05 0.72 6.65 -51.93 -0.35 0.37 16 51 H 0.07 0.81 6.21 -51.93 -0.32 0.48 16 LS Contribution 400.35 15.07 6.03 6.03 Total: -1.00 -35.07 400.35 -8.47 -43.53 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -8.40 Total: -2.14 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.23 Total: -3.40 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.07 Total: -49.80 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.07 -8.47 -43.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274130018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.967 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds