Wall clock time and date at job start Wed Apr 1 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28720 * 125.86332 * 2 1 4 4 N 1.28634 * 110.17356 * 180.23870 * 3 2 1 5 5 C 1.33775 * 108.88827 * 359.75580 * 4 3 2 6 6 C 1.35309 * 125.87247 * 179.82675 * 2 1 3 7 7 C 1.50707 * 126.90843 * 0.03087 * 6 2 1 8 8 N 1.46894 * 109.47065 * 274.71253 * 7 6 2 9 9 C 1.46866 * 110.99831 * 170.00181 * 8 7 6 10 10 C 1.53138 * 109.44691 * 186.35533 * 9 8 7 11 11 C 1.52543 * 109.31923 * 301.72764 * 10 9 8 12 12 C 1.54126 * 110.08411 * 178.11080 * 11 10 9 13 13 C 1.54594 * 101.65077 * 143.30142 * 12 11 10 14 14 N 1.46817 * 105.49553 * 335.01992 * 13 12 11 15 15 C 1.46500 * 124.36211 * 196.92308 * 14 13 12 16 16 C 1.53006 * 109.46998 * 89.99797 * 15 14 13 17 17 C 1.50699 * 109.46866 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47141 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47494 * 119.99680 * 21 19 17 24 24 H 1.48505 * 109.47047 * 239.99860 * 21 19 17 25 25 C 1.34577 * 111.27702 * 17.18106 * 14 13 12 26 26 O 1.21280 * 125.02866 * 179.02726 * 25 14 13 27 27 C 1.52539 * 110.49347 * 56.31083 * 11 10 9 28 28 C 1.46850 * 111.00081 * 294.35633 * 8 7 6 29 29 H 1.09003 * 109.46837 * 270.17613 * 1 2 3 30 30 H 1.08991 * 109.47235 * 30.17533 * 1 2 3 31 31 H 1.09000 * 109.46947 * 150.17285 * 1 2 3 32 32 H 1.07994 * 126.75181 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.46388 * 154.71001 * 7 6 2 34 34 H 1.09001 * 109.46694 * 34.71545 * 7 6 2 35 35 H 1.09001 * 109.46993 * 66.36767 * 9 8 7 36 36 H 1.08995 * 109.47545 * 306.35569 * 9 8 7 37 37 H 1.08996 * 109.49962 * 181.77380 * 10 9 8 38 38 H 1.09008 * 109.49598 * 61.68145 * 10 9 8 39 39 H 1.08996 * 110.99463 * 25.21114 * 12 11 10 40 40 H 1.09004 * 110.99313 * 261.38991 * 12 11 10 41 41 H 1.09003 * 110.23944 * 216.01734 * 13 12 11 42 42 H 1.08998 * 110.31512 * 94.06555 * 13 12 11 43 43 H 1.09000 * 109.47175 * 329.99929 * 15 14 13 44 44 H 1.09001 * 109.47297 * 209.99436 * 15 14 13 45 45 H 1.08993 * 109.46955 * 300.00226 * 16 15 14 46 46 H 1.09000 * 109.47050 * 60.00054 * 16 15 14 47 47 H 0.96992 * 120.00032 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.50194 * 63.66019 * 27 11 10 49 49 H 1.08999 * 109.49741 * 183.75122 * 27 11 10 50 50 H 1.09001 * 109.47315 * 293.64943 * 28 8 7 51 51 H 1.09000 * 109.47653 * 53.65665 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2191 1.0432 0.0000 4 7 3.4575 0.6953 -0.0050 5 6 3.5322 -0.6403 -0.0031 6 6 2.2579 -1.0964 0.0033 7 6 1.8118 -2.5359 0.0070 8 7 1.5576 -2.9662 1.3883 9 6 0.8985 -4.2784 1.4180 10 6 0.5080 -4.6204 2.8587 11 6 1.7571 -4.6170 3.7344 12 6 1.3776 -4.9129 5.1987 13 6 2.5766 -5.7703 5.6647 14 7 3.1222 -6.3779 4.4445 15 6 4.0275 -7.5295 4.4278 16 6 3.2091 -8.8205 4.3583 17 6 4.1404 -10.0052 4.3417 18 1 5.2090 -9.8526 4.3767 19 6 3.6283 -11.2839 4.2808 20 7 2.3270 -11.4697 4.2377 21 14 4.7825 -12.7524 4.2610 22 1 6.1886 -12.2777 4.3179 23 1 4.5036 -13.6172 5.4355 24 1 4.5732 -13.5297 3.0130 25 6 2.6879 -5.7370 3.3437 26 8 2.9973 -6.0202 2.2057 27 6 2.4718 -3.2727 3.6400 28 6 2.7983 -2.9743 2.1738 29 1 -0.3633 0.0032 1.0277 30 1 -0.3633 0.8883 -0.5165 31 1 -0.3633 -0.8915 -0.5111 32 1 4.4322 -1.2372 -0.0058 33 1 2.5920 -3.1591 -0.4300 34 1 0.8976 -2.6344 -0.5784 35 1 1.5822 -5.0370 1.0369 36 1 0.0040 -4.2499 0.7959 37 1 0.0472 -5.6077 2.8862 38 1 -0.1987 -3.8781 3.2300 39 1 0.4478 -5.4790 5.2544 40 1 1.3077 -3.9921 5.7777 41 1 2.2409 -6.5451 6.3540 42 1 3.3286 -5.1418 6.1417 43 1 4.6312 -7.5304 5.3353 44 1 4.6803 -7.4660 3.5571 45 1 2.5564 -8.8841 5.2288 46 1 2.6055 -8.8197 3.4508 47 1 1.9667 -12.3692 4.1952 48 1 1.8262 -2.4887 4.0359 49 1 3.3953 -3.3103 4.2179 50 1 3.4682 -3.7423 1.7871 51 1 3.2814 -2.0000 2.1001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274130018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:28 Heat of formation + Delta-G solvation = 42.736560 kcal Electronic energy + Delta-G solvation = -31620.420864 eV Core-core repulsion = 27555.720032 eV Total energy + Delta-G solvation = -4064.700833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.25338 -42.17773 -39.12339 -37.47803 -36.27578 -35.55337 -34.88182 -33.07687 -31.92016 -31.61619 -29.88503 -28.78564 -27.67184 -26.93302 -25.21185 -24.36323 -23.57682 -23.49191 -22.34054 -21.66514 -21.35620 -19.54474 -18.69384 -18.14722 -17.82574 -17.25493 -17.10736 -16.68445 -16.38594 -16.23156 -16.05364 -15.72338 -15.24755 -15.20686 -14.70327 -14.60115 -14.42580 -14.31104 -14.07685 -14.05521 -13.87144 -13.72264 -13.36185 -13.33568 -13.13499 -13.01832 -12.90099 -12.74975 -12.57504 -12.56264 -12.30563 -12.07293 -11.96600 -11.87752 -11.78894 -11.41200 -11.32377 -11.25593 -10.98521 -10.63367 -10.46787 -10.21654 -9.51497 -9.29671 -8.25943 -6.38508 0.56897 1.37391 1.38583 1.50280 1.51644 1.56023 1.67946 2.19151 2.40485 2.91658 3.07568 3.31677 3.38118 3.51022 3.68017 3.74186 3.93811 4.00054 4.05684 4.06654 4.27180 4.31543 4.32779 4.37191 4.44568 4.50140 4.56626 4.60039 4.63134 4.68135 4.71227 4.72474 4.79092 4.85449 4.89187 4.91428 4.99141 4.99776 5.10448 5.13443 5.18198 5.25435 5.30865 5.34654 5.45880 5.60317 5.65858 5.82202 5.97285 6.02714 6.14158 6.37130 6.77031 7.29485 7.32272 7.48844 8.86269 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.002269 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.381316 B =12339.790763 C =12629.235620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.270 5.270 3 N -0.117 5.117 4 N -0.307 5.307 5 C -0.060 4.060 6 C 0.007 3.993 7 C 0.126 3.874 8 N -0.518 5.518 9 C 0.046 3.954 10 C -0.087 4.087 11 C -0.085 4.085 12 C -0.113 4.113 13 C 0.092 3.908 14 N -0.622 5.622 15 C 0.143 3.857 16 C 0.027 3.973 17 C -0.544 4.544 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.969 3.031 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.281 1.281 25 C 0.507 3.493 26 O -0.573 6.573 27 C -0.083 4.083 28 C 0.051 3.949 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.195 0.805 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.031 0.969 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.050 0.950 45 H -0.001 1.001 46 H -0.026 1.026 47 H 0.265 0.735 48 H 0.105 0.895 49 H 0.070 0.930 50 H 0.019 0.981 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.225 22.769 -2.172 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.065 5.065 3 N -0.096 5.096 4 N -0.171 5.171 5 C -0.219 4.219 6 C -0.127 4.127 7 C -0.003 4.003 8 N -0.243 5.243 9 C -0.081 4.081 10 C -0.126 4.126 11 C -0.088 4.088 12 C -0.150 4.150 13 C -0.030 4.030 14 N -0.354 5.354 15 C 0.021 3.979 16 C -0.011 4.011 17 C -0.582 4.582 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.207 1.207 25 C 0.296 3.704 26 O -0.454 6.454 27 C -0.121 4.121 28 C -0.077 4.077 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.138 0.862 32 H 0.212 0.788 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.049 0.951 36 H 0.114 0.886 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.146 0.854 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.018 0.982 46 H -0.008 1.008 47 H 0.073 0.927 48 H 0.123 0.877 49 H 0.089 0.911 50 H 0.037 0.963 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.451 24.343 -2.527 25.891 hybrid contribution 1.140 -3.187 -0.564 3.432 sum -7.311 21.155 -3.091 22.595 Atomic orbital electron populations 1.22670 0.70159 1.07232 1.06689 1.47483 1.10745 1.03598 1.44636 1.78216 0.96805 1.12919 1.21687 1.75034 1.10458 1.13684 1.17972 1.23695 0.98462 0.91571 1.08212 1.22097 0.90677 0.91951 1.08011 1.20504 1.02648 0.86148 0.91009 1.62039 1.24101 1.27756 1.10376 1.22251 0.99165 0.88875 0.97858 1.21386 0.95282 1.02119 0.93766 1.21075 0.95807 0.93993 0.97948 1.22756 0.97374 1.01766 0.93109 1.22387 0.96894 0.97243 0.86508 1.48724 1.47511 1.30581 1.08594 1.21302 0.91330 0.83929 1.01352 1.19180 0.95079 0.92455 0.94414 1.21569 0.93738 0.91921 1.51017 0.91746 1.25999 0.96811 1.02499 0.94416 1.70112 1.13155 1.22700 1.51156 0.85345 0.79156 0.78384 0.77840 1.18396 1.19852 1.20672 1.21474 0.81105 0.83728 0.84090 1.90593 1.61842 1.70708 1.22220 1.21386 1.00835 0.94114 0.95779 1.22132 0.90986 1.00366 0.94247 0.87488 0.87102 0.86151 0.78757 0.92163 0.86765 0.95062 0.88560 0.92634 0.87305 0.89683 0.85359 0.90780 0.88937 0.89649 0.93120 0.98224 1.00769 0.92667 0.87670 0.91133 0.96256 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 11.22 127.77 1.43 1.92 16 2 N -0.27 -4.62 3.74 -355.73 -1.33 -5.95 16 3 N -0.12 -2.83 13.17 37.02 0.49 -2.34 16 4 N -0.31 -8.20 12.41 -58.26 -0.72 -8.92 16 5 C -0.06 -1.31 10.84 83.73 0.91 -0.40 16 6 C 0.01 0.12 5.72 41.36 0.24 0.36 16 7 C 0.13 1.96 5.20 85.56 0.44 2.40 16 8 N -0.52 -9.20 4.63 -900.44 -4.17 -13.37 16 9 C 0.05 0.95 5.24 86.36 0.45 1.40 16 10 C -0.09 -1.76 4.78 30.49 0.15 -1.62 16 11 C -0.08 -1.90 0.55 -52.82 -0.03 -1.93 16 12 C -0.11 -1.99 6.21 31.52 0.20 -1.79 16 13 C 0.09 2.19 7.35 86.86 0.64 2.83 16 14 N -0.62 -21.83 2.94 -818.04 -2.40 -24.23 16 15 C 0.14 6.09 5.88 86.38 0.51 6.60 16 16 C 0.03 1.44 5.30 29.85 0.16 1.60 16 17 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 18 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 19 C 0.00 0.05 5.46 84.65 0.46 0.51 16 20 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 21 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 C 0.51 17.66 6.32 87.72 0.55 18.22 16 26 O -0.57 -24.77 13.82 -3.03 -0.04 -24.81 16 27 C -0.08 -1.55 4.76 30.49 0.15 -1.40 16 28 C 0.05 1.08 5.08 86.36 0.44 1.52 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.12 0.28 7.22 -2.39 -0.02 0.26 16 32 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 34 H 0.11 1.17 7.15 -2.39 -0.02 1.15 16 35 H 0.03 0.93 5.79 -2.39 -0.01 0.92 16 36 H 0.10 1.50 8.01 -2.39 -0.02 1.48 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.08 1.52 7.89 -2.39 -0.02 1.50 16 40 H 0.13 1.29 7.87 -2.39 -0.02 1.27 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.71 16 43 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.05 2.33 7.92 -2.39 -0.02 2.31 16 45 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 46 H -0.03 -1.63 8.14 -2.39 -0.02 -1.65 16 47 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.02 0.55 6.65 -2.39 -0.02 0.53 16 51 H 0.08 1.61 6.21 -2.39 -0.01 1.59 16 Total: -1.00 -81.52 400.35 1.97 -79.55 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.92 Total: 11.20 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 6.92 Total: -0.73 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -7.86 Total: -111.57 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.04 Total: -24.81 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -81.52 1.97 -79.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274130018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.283 kcal (2) G-P(sol) polarization free energy of solvation -81.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds