Wall clock time and date at job start Wed Apr 1 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40443 * 126.82238 * 2 1 4 4 C 1.30713 * 106.79327 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.53042 * 179.97438 * 4 3 2 6 6 C 1.52998 * 117.49617 * 8.77087 * 5 4 3 7 7 C 1.53001 * 117.49732 * 300.11309 * 5 4 3 8 8 N 1.33249 * 108.94745 * 359.76090 * 4 3 2 9 9 C 1.30831 * 109.82477 * 0.40553 * 8 4 3 10 10 C 1.50697 * 125.96177 * 179.86654 * 9 8 4 11 11 C 1.50701 * 109.47174 * 269.68921 * 10 9 8 12 12 O 1.21285 * 119.99972 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00103 * 179.97438 * 11 10 9 14 14 C 1.46927 * 120.62962 * 5.40951 * 13 11 10 15 15 C 1.53193 * 108.77778 * 126.41358 * 14 13 11 16 16 C 1.53037 * 109.31165 * 54.63300 * 15 14 13 17 17 C 1.53076 * 109.65922 * 298.69928 * 16 15 14 18 18 C 1.46924 * 120.63078 * 185.42796 * 13 11 10 19 19 H 1.09003 * 109.58276 * 113.66117 * 18 13 11 20 20 C 1.52992 * 109.58773 * 353.37873 * 18 13 11 21 21 N 1.46505 * 109.47482 * 179.97438 * 20 18 13 22 22 C 1.36928 * 120.00125 * 174.97899 * 21 20 18 23 23 H 1.07999 * 120.00276 * 0.02562 * 22 21 20 24 24 C 1.38817 * 119.99856 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99779 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99976 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47158 * 89.99764 * 26 24 22 28 28 H 1.48496 * 109.46828 * 209.99772 * 26 24 22 29 29 H 1.48500 * 109.46677 * 329.99720 * 26 24 22 30 30 H 1.09006 * 109.46825 * 269.95959 * 1 2 3 31 31 H 1.09005 * 109.47239 * 29.95215 * 1 2 3 32 32 H 1.08997 * 109.47164 * 149.95676 * 1 2 3 33 33 H 1.08995 * 115.55149 * 154.43762 * 5 4 3 34 34 H 1.09008 * 117.50239 * 359.97438 * 6 5 4 35 35 H 1.08998 * 117.50313 * 145.02124 * 6 5 4 36 36 H 1.08999 * 117.49727 * 214.98041 * 7 5 4 37 37 H 1.09003 * 117.49807 * 359.97006 * 7 5 4 38 38 H 1.09004 * 109.47229 * 149.68667 * 10 9 8 39 39 H 1.09000 * 109.47039 * 29.68814 * 10 9 8 40 40 H 1.09001 * 109.58905 * 246.20144 * 14 13 11 41 41 H 1.09003 * 109.58935 * 6.62551 * 14 13 11 42 42 H 1.08996 * 109.49798 * 174.58591 * 15 14 13 43 43 H 1.09002 * 109.49425 * 294.65319 * 15 14 13 44 44 H 1.09007 * 109.46172 * 58.65773 * 16 15 14 45 45 H 1.08999 * 109.46335 * 178.63125 * 16 15 14 46 46 H 1.09000 * 109.39560 * 301.27822 * 17 16 15 47 47 H 1.08999 * 109.62667 * 181.16829 * 17 16 15 48 48 H 1.08998 * 109.47560 * 59.95984 * 20 18 13 49 49 H 1.09002 * 109.47266 * 299.95693 * 20 18 13 50 50 H 0.97004 * 119.99361 * 355.25190 * 21 20 18 51 51 H 0.96999 * 119.99418 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5348 0.6766 -0.0006 5 6 4.7776 1.5289 -0.0013 6 6 4.6017 3.0346 0.2055 7 6 4.9745 2.4897 -1.1756 8 7 3.5096 -0.6557 0.0044 9 6 2.2707 -1.0761 -0.0006 10 6 1.8246 -2.5155 -0.0004 11 6 1.6750 -2.9953 -1.4211 12 8 1.9073 -2.2424 -2.3431 13 7 1.2832 -4.2612 -1.6672 14 6 0.8846 -5.1488 -0.5663 15 6 -0.5060 -5.7158 -0.8687 16 6 -0.4906 -6.3876 -2.2436 17 6 -0.1465 -5.3533 -3.3184 18 6 1.2468 -4.7798 -3.0413 19 1 1.9943 -5.5648 -3.1555 20 6 1.5396 -3.6457 -4.0255 21 7 1.5033 -4.1656 -5.3947 22 6 1.6352 -3.3101 -6.4557 23 1 1.7663 -2.2520 -6.2832 24 6 1.6013 -3.8028 -7.7530 25 7 1.4429 -5.0925 -7.9632 26 14 1.7819 -2.6358 -9.2004 27 1 3.2182 -2.5031 -9.5531 28 1 1.0337 -3.1726 -10.3654 29 1 1.2372 -1.3040 -8.8332 30 1 -0.3633 -0.0007 1.0277 31 1 -0.3634 0.8904 -0.5131 32 1 -0.3633 -0.8896 -0.5145 33 1 5.6673 1.0632 0.4226 34 1 3.5870 3.4088 0.3417 35 1 5.3758 3.5596 0.7651 36 1 5.9938 2.6564 -1.5240 37 1 4.2054 2.5051 -1.9478 38 1 0.8673 -2.5992 0.5141 39 1 2.5675 -3.1260 0.5130 40 1 1.6009 -5.9656 -0.4778 41 1 0.8542 -4.5843 0.3657 42 1 -0.7730 -6.4496 -0.1082 43 1 -1.2369 -4.9071 -0.8666 44 1 0.2578 -7.1801 -2.2523 45 1 -1.4724 -6.8132 -2.4510 46 1 -0.8820 -4.5492 -3.2955 47 1 -0.1560 -5.8278 -4.2996 48 1 2.5269 -3.2319 -3.8199 49 1 0.7878 -2.8644 -3.9138 50 1 1.3819 -5.1154 -5.5497 51 1 1.4197 -5.4368 -8.8697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275054413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:21 Heat of formation + Delta-G solvation = 109.618167 kcal Electronic energy + Delta-G solvation = -31463.214737 eV Core-core repulsion = 27401.414109 eV Total energy + Delta-G solvation = -4061.800628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25434 -40.39966 -37.52059 -37.17968 -34.85429 -33.98134 -33.13802 -32.53861 -31.79200 -29.77484 -29.02745 -27.43884 -26.06655 -24.43968 -23.85108 -23.22704 -22.51537 -21.65571 -21.04581 -20.45439 -19.91792 -18.92032 -17.25329 -17.12834 -16.87703 -16.03311 -15.75904 -15.55618 -15.42874 -14.81134 -14.54729 -14.42851 -14.22935 -14.08891 -13.69017 -13.52870 -13.37423 -13.27571 -13.12859 -12.95623 -12.74432 -12.36800 -12.22823 -11.96866 -11.77082 -11.64653 -11.60250 -11.06210 -11.00448 -10.95470 -10.84447 -10.69313 -10.65985 -10.57139 -10.38869 -9.99125 -9.97773 -9.74774 -9.65040 -9.27384 -8.88662 -8.80129 -8.38200 -6.75894 -5.66022 -2.92146 1.46601 2.18476 2.62908 2.64179 3.04243 3.51402 3.56173 3.58654 3.65110 3.86743 4.22809 4.31111 4.41707 4.63251 4.70065 4.71602 4.73260 4.81592 4.84210 4.87929 4.93998 5.00058 5.04773 5.19019 5.19698 5.33302 5.33790 5.44167 5.49744 5.55260 5.67929 5.68123 5.75259 5.78202 5.94210 5.96685 5.97166 6.00136 6.20582 6.21039 6.24899 6.27255 6.38924 6.52976 6.67609 6.73562 7.10008 7.26764 7.46275 7.84959 8.08766 8.25388 8.55196 9.64756 10.23282 10.58439 11.57558 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007891 B = 0.003530 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3547.693196 B = 7929.005742 C =10754.657918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.372 5.372 3 N -0.315 5.315 4 C 0.256 3.744 5 C -0.070 4.070 6 C -0.162 4.162 7 C -0.158 4.158 8 N -0.526 5.526 9 C 0.304 3.696 10 C -0.066 4.066 11 C 0.510 3.490 12 O -0.499 6.499 13 N -0.604 5.604 14 C 0.106 3.894 15 C -0.134 4.134 16 C -0.121 4.121 17 C -0.125 4.125 18 C 0.141 3.859 19 H 0.072 0.928 20 C 0.165 3.835 21 N -0.737 5.737 22 C -0.224 4.224 23 H 0.069 0.931 24 C -0.018 4.018 25 N -0.939 5.939 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.042 0.958 49 H 0.033 0.967 50 H 0.378 0.622 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 4.138 25.121 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.162 5.162 3 N -0.144 5.144 4 C -0.025 4.025 5 C -0.091 4.091 6 C -0.200 4.200 7 C -0.196 4.196 8 N -0.253 5.253 9 C 0.027 3.973 10 C -0.109 4.109 11 C 0.295 3.705 12 O -0.373 6.373 13 N -0.340 5.340 14 C -0.017 4.017 15 C -0.172 4.172 16 C -0.159 4.159 17 C -0.164 4.164 18 C 0.038 3.962 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.383 5.383 22 C -0.356 4.356 23 H 0.087 0.913 24 C -0.213 4.213 25 N -0.588 5.588 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.147 0.853 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.060 0.940 49 H 0.051 0.949 50 H 0.212 0.788 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.354 5.269 24.553 25.222 hybrid contribution -0.315 -0.135 -0.906 0.969 sum -2.669 5.134 23.646 24.344 Atomic orbital electron populations 1.21941 0.73925 1.05370 1.03354 1.50031 1.07724 1.03737 1.54756 1.77905 1.01328 1.07455 1.27683 1.23023 0.92401 0.89180 0.97915 1.20034 0.93360 0.89699 1.05981 1.23032 1.03615 0.93669 0.99658 1.23055 1.03424 1.01399 0.91762 1.70211 1.19365 1.10868 1.24835 1.23273 0.86125 0.91336 0.96553 1.20287 1.04348 0.88364 0.97873 1.20053 0.78290 0.82262 0.89922 1.90930 1.48079 1.54198 1.44056 1.48095 1.66283 1.11453 1.08131 1.21776 0.96522 0.94239 0.89205 1.21913 0.96540 1.00530 0.98207 1.21562 1.01822 0.98293 0.94236 1.21937 0.96410 0.98524 0.99505 1.21617 0.97064 0.97746 0.79733 0.90994 1.21240 0.99919 0.91674 0.83289 1.42559 1.88243 1.07576 0.99940 1.19222 1.40363 0.90606 0.85372 0.91326 1.24688 1.03532 0.95945 0.97171 1.69655 1.58156 1.11162 1.19877 0.86202 0.77552 0.79980 0.82629 1.21811 1.21878 1.20885 0.90218 0.88746 0.89148 0.85220 0.87975 0.87986 0.87708 0.88384 0.86992 0.85300 0.90974 0.90129 0.90892 0.91592 0.91807 0.91784 0.91790 0.89447 0.94047 0.94883 0.78799 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 11.16 59.84 0.67 1.51 16 2 N -0.37 -5.01 4.04 -65.10 -0.26 -5.27 16 3 N -0.32 -4.81 12.24 32.42 0.40 -4.42 16 4 C 0.26 3.93 7.69 -156.84 -1.21 2.73 16 5 C -0.07 -0.84 6.33 -91.77 -0.58 -1.42 16 6 C -0.16 -1.56 10.14 -26.69 -0.27 -1.83 16 7 C -0.16 -1.71 10.24 -26.69 -0.27 -1.99 16 8 N -0.53 -8.52 11.19 -8.16 -0.09 -8.61 16 9 C 0.30 4.25 6.48 -155.69 -1.01 3.24 16 10 C -0.07 -0.67 4.23 -29.04 -0.12 -0.80 16 11 C 0.51 7.38 7.60 -10.99 -0.08 7.30 16 12 O -0.50 -9.95 11.44 5.55 0.06 -9.89 16 13 N -0.60 -7.86 2.97 -165.22 -0.49 -8.35 16 14 C 0.11 0.86 6.33 -3.71 -0.02 0.84 16 15 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 16 C -0.12 -1.31 5.88 -26.67 -0.16 -1.46 16 17 C -0.13 -1.90 5.13 -26.59 -0.14 -2.04 16 18 C 0.14 2.36 3.04 -67.60 -0.21 2.15 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.17 3.73 4.10 -4.04 -0.02 3.71 16 21 N -0.74 -19.70 5.29 -59.91 -0.32 -20.02 16 22 C -0.22 -6.70 9.99 -15.06 -0.15 -6.85 16 23 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 24 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 25 N -0.94 -29.14 13.06 55.49 0.72 -28.41 16 26 Si 0.90 23.62 29.55 -169.99 -5.02 18.60 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 29 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.71 7.72 -51.93 -0.40 0.31 16 33 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.10 1.07 7.88 -51.92 -0.41 0.66 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.11 0.68 7.09 -51.93 -0.37 0.31 16 39 H 0.13 1.06 8.12 -51.93 -0.42 0.64 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.41 5.96 -51.93 -0.31 0.10 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.09 1.54 7.18 -51.93 -0.37 1.17 16 48 H 0.04 1.05 6.44 -51.93 -0.33 0.72 16 49 H 0.03 0.81 7.04 -51.93 -0.37 0.44 16 50 H 0.38 10.27 6.76 -40.82 -0.28 9.99 16 51 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 407.18 15.07 6.14 6.14 Total: -1.00 -38.86 407.18 -10.99 -49.85 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -8.30 Total: 7.17 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -3.82 Total: 3.22 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -0.04 Total: -75.08 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.06 Total: -9.89 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.86 -10.99 -49.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275054413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.468 kcal (2) G-P(sol) polarization free energy of solvation -38.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds