Wall clock time and date at job start Wed Apr 1 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47896 * 110.99782 * 2 1 4 4 C 1.53997 * 107.05754 * 145.84347 * 3 2 1 5 5 C 1.54599 * 105.13815 * 358.77976 * 4 3 2 6 6 C 1.49005 * 110.97145 * 117.44663 * 2 1 3 7 7 H 1.09003 * 110.68346 * 318.61724 * 6 2 1 8 8 C 1.50702 * 110.86604 * 81.89549 * 6 2 1 9 9 C 1.35362 * 126.38357 * 228.64968 * 8 6 2 10 10 C 1.41509 * 105.49956 * 179.97438 * 9 8 6 11 11 C 1.47712 * 126.51454 * 179.97438 * 10 9 8 12 12 O 1.21569 * 119.99905 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99668 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00154 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.84717 * 336.19519 * 14 13 11 16 16 C 1.53774 * 113.61643 * 107.49863 * 14 13 11 17 17 C 1.53779 * 87.08340 * 89.11792 * 16 14 13 18 18 H 1.09001 * 113.68928 * 270.87604 * 17 16 14 19 19 C 1.52997 * 113.61602 * 139.97788 * 17 16 14 20 20 N 1.46502 * 109.46923 * 87.50855 * 19 17 16 21 21 C 1.36937 * 119.99994 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00240 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00271 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99344 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00267 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47057 * 59.99977 * 25 23 21 27 27 H 1.48503 * 109.46947 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47283 * 299.99559 * 25 23 21 29 29 C 1.53779 * 113.61432 * 204.99964 * 14 13 11 30 30 N 1.31804 * 106.96555 * 0.02562 * 10 9 8 31 31 N 1.28477 * 110.07245 * 359.71491 * 30 10 9 32 32 H 0.96993 * 124.88591 * 180.29918 * 31 30 10 33 33 H 1.09003 * 109.47538 * 60.12257 * 1 2 3 34 34 H 1.09006 * 109.47327 * 180.12532 * 1 2 3 35 35 H 1.09004 * 109.47579 * 300.11933 * 1 2 3 36 36 H 1.09008 * 109.92080 * 26.49628 * 3 2 1 37 37 H 1.08993 * 109.92102 * 265.19837 * 3 2 1 38 38 H 1.08999 * 110.31386 * 239.86336 * 4 3 2 39 39 H 1.09002 * 110.30705 * 117.69177 * 4 3 2 40 40 H 1.09002 * 110.72617 * 96.39862 * 5 4 3 41 41 H 1.08997 * 110.72339 * 219.50901 * 5 4 3 42 42 H 1.07999 * 127.24854 * 359.97438 * 9 8 6 43 43 H 0.97003 * 120.00308 * 359.97438 * 13 11 10 44 44 H 1.09003 * 113.61637 * 203.66735 * 16 14 13 45 45 H 1.09005 * 113.61602 * 334.57101 * 16 14 13 46 46 H 1.08999 * 109.46999 * 207.50335 * 19 17 16 47 47 H 1.08996 * 109.47590 * 327.50688 * 19 17 16 48 48 H 0.96997 * 119.99912 * 359.97438 * 20 19 17 49 49 H 0.97000 * 119.99769 * 179.97438 * 24 23 21 50 50 H 1.08999 * 113.61923 * 25.42857 * 29 14 13 51 51 H 1.09006 * 113.61397 * 156.33299 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3807 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0930 1.3153 6 6 2.0023 -0.6413 1.2347 7 1 1.4256 -0.3349 2.1075 8 6 2.0090 -2.1423 1.1000 9 6 1.5309 -3.0315 2.0016 10 6 1.7592 -4.3069 1.4326 11 6 1.4133 -5.6117 2.0323 12 8 0.8765 -5.6565 3.1222 13 7 1.6927 -6.7524 1.3713 14 6 1.3491 -8.0466 1.9658 15 1 1.2690 -8.0054 3.0521 16 6 0.1581 -8.7408 1.2844 17 6 1.1798 -9.3882 0.3348 18 1 1.3900 -8.7933 -0.5539 19 6 0.8741 -10.8520 0.0114 20 7 -0.0280 -10.9194 -1.1410 21 6 -0.4432 -12.1350 -1.6154 22 1 -0.1054 -13.0441 -1.1403 23 6 -1.2975 -12.1988 -2.7077 24 7 -1.7088 -11.0908 -3.2870 25 14 -1.8633 -13.8571 -3.3552 26 1 -2.5939 -14.5831 -2.2855 27 1 -2.7639 -13.6531 -4.5183 28 1 -0.6826 -14.6531 -3.7764 29 6 2.2173 -9.2088 1.4557 30 7 2.3403 -4.1092 0.2662 31 7 2.4880 -2.8505 0.0549 32 1 2.8881 -2.4647 -0.7400 33 1 -0.3634 0.5119 -0.8911 34 1 -0.3634 -1.0277 0.0022 35 1 -0.3634 0.5157 0.8889 36 1 1.2757 2.0562 0.4572 37 1 2.2121 1.6967 -1.0211 38 1 3.2135 2.0428 1.6767 39 1 4.1469 1.6455 0.2024 40 1 4.1115 -0.6541 0.6561 41 1 3.8152 -0.1200 2.3416 42 1 1.0718 -2.8136 2.9546 43 1 2.1206 -6.7166 0.5015 44 1 -0.3560 -9.4562 1.9263 45 1 -0.5236 -8.0506 0.7873 46 1 1.8020 -11.3739 -0.2226 47 1 0.3995 -11.3230 0.8722 48 1 -0.3317 -10.1028 -1.5675 49 1 -2.3055 -11.1354 -4.0505 50 1 3.1981 -8.8965 1.0970 51 1 2.2663 -10.0522 2.1445 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276983566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:35 Heat of formation + Delta-G solvation = 74.679446 kcal Electronic energy + Delta-G solvation = -29579.999103 eV Core-core repulsion = 25516.683418 eV Total energy + Delta-G solvation = -4063.315685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.95883 -39.97906 -39.38918 -38.07230 -34.46617 -33.20994 -32.76512 -32.15024 -31.92916 -30.71929 -28.31677 -26.85116 -26.10317 -25.40790 -24.55694 -23.11682 -22.43913 -21.47176 -21.32883 -21.29342 -20.09468 -18.97377 -18.03531 -17.14904 -16.91347 -16.60468 -15.98117 -15.82383 -15.54220 -14.86027 -14.78104 -14.57438 -14.45141 -14.34147 -13.92005 -13.83220 -13.78081 -13.53859 -13.26181 -13.00805 -12.69720 -12.29775 -12.26482 -12.11813 -12.04614 -11.99974 -11.72940 -11.56371 -11.30537 -11.07216 -10.97547 -10.76987 -10.42845 -10.29541 -10.10032 -10.03251 -9.75572 -9.60169 -9.53729 -9.29395 -9.13549 -8.89887 -8.77213 -6.83620 -5.69782 -2.97715 1.42604 1.79375 2.60882 3.13060 3.34458 3.38463 3.48384 3.52234 3.53608 3.97748 4.02728 4.27447 4.32965 4.45746 4.61599 4.63779 4.77549 4.79272 4.90023 4.91475 4.94820 5.03646 5.14670 5.21012 5.22526 5.24085 5.28281 5.34898 5.43733 5.46390 5.52576 5.57239 5.64187 5.82628 5.95993 6.02662 6.08324 6.11950 6.19765 6.20639 6.34150 6.35066 6.40577 6.51400 6.69372 6.76467 6.87019 7.02574 7.46263 7.74030 7.75426 8.22567 8.49523 9.60189 10.20380 10.54854 11.53175 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.001765 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.325693 B =15859.568527 C =16988.955404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.523 5.523 3 C 0.035 3.965 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.130 3.870 7 H 0.084 0.916 8 C 0.032 3.968 9 C -0.173 4.173 10 C -0.011 4.011 11 C 0.606 3.394 12 O -0.535 6.535 13 N -0.695 5.695 14 C 0.115 3.885 15 H 0.101 0.899 16 C -0.138 4.138 17 C -0.114 4.114 18 H 0.088 0.912 19 C 0.162 3.838 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 C -0.138 4.138 30 N -0.252 5.252 31 N -0.361 5.361 32 H 0.448 0.552 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.161 0.839 43 H 0.408 0.592 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.018 0.982 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.069 0.931 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.246 29.271 10.829 33.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.247 5.247 3 C -0.093 4.093 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.020 3.980 7 H 0.102 0.898 8 C -0.095 4.095 9 C -0.202 4.202 10 C -0.172 4.172 11 C 0.390 3.610 12 O -0.410 6.410 13 N -0.345 5.345 14 C 0.010 3.990 15 H 0.119 0.881 16 C -0.177 4.177 17 C -0.132 4.132 18 H 0.106 0.894 19 C 0.035 3.965 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.212 4.212 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.176 4.176 30 N -0.088 5.088 31 N -0.075 5.075 32 H 0.293 0.707 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.178 0.822 43 H 0.243 0.757 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.381 28.171 10.239 32.431 hybrid contribution -0.789 0.455 -0.204 0.933 sum 11.592 28.626 10.036 32.474 Atomic orbital electron populations 1.22552 0.86835 1.02897 1.01138 1.64743 1.09103 1.15272 1.35622 1.22887 0.95932 0.89261 1.01182 1.22427 0.97935 0.96732 0.99893 1.22551 0.94959 0.95649 1.02446 1.21337 0.96807 0.86764 0.93074 0.89782 1.20877 1.03990 0.94170 0.90422 1.21470 1.06689 0.90014 1.02011 1.21874 1.06423 0.95203 0.93654 1.16847 0.78084 0.81850 0.84171 1.90786 1.43032 1.86783 1.20408 1.45533 1.61389 1.04854 1.22758 1.21976 0.97082 0.81498 0.98404 0.88117 1.23416 0.96394 0.99385 0.98508 1.22761 0.95467 0.98433 0.96567 0.89385 1.20640 0.93213 0.91877 0.90786 1.42347 1.55384 1.06220 1.33606 1.19212 1.22266 0.85835 1.09629 0.91297 1.24742 1.00638 0.96906 0.98897 1.69657 1.38472 1.25469 1.24728 0.86261 0.78206 0.83513 0.78180 1.21317 1.21751 1.21332 1.23314 0.97872 0.97510 0.98932 1.73609 1.18138 0.98973 1.18112 1.43184 1.44141 1.02817 1.17383 0.70715 0.90902 0.90882 0.94829 0.93216 0.89841 0.91003 0.90500 0.90716 0.90037 0.82158 0.75669 0.89043 0.91278 0.96431 0.96202 0.78318 0.93560 0.91213 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.30 60.06 0.56 0.64 16 2 N -0.52 -3.09 5.25 -231.81 -1.22 -4.31 16 3 C 0.04 0.15 6.70 -2.76 -0.02 0.13 16 4 C -0.13 -0.45 6.93 -25.37 -0.18 -0.63 16 5 C -0.12 -0.53 6.47 -24.87 -0.16 -0.69 16 6 C 0.13 0.77 2.80 -66.67 -0.19 0.58 16 7 H 0.08 0.47 7.97 -51.93 -0.41 0.05 16 8 C 0.03 0.27 5.93 -82.21 -0.49 -0.22 16 9 C -0.17 -1.85 10.73 -39.36 -0.42 -2.27 16 10 C -0.01 -0.14 7.13 -82.76 -0.59 -0.73 16 11 C 0.61 8.92 7.82 -12.39 -0.10 8.82 16 12 O -0.54 -9.29 16.52 5.30 0.09 -9.20 16 13 N -0.70 -9.37 5.26 -54.00 -0.28 -9.65 16 14 C 0.12 1.59 4.32 -67.12 -0.29 1.30 16 15 H 0.10 1.42 7.46 -51.93 -0.39 1.03 16 16 C -0.14 -2.19 7.43 -25.92 -0.19 -2.38 16 17 C -0.11 -1.86 3.63 -89.81 -0.33 -2.19 16 18 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 19 C 0.16 3.34 6.10 -4.04 -0.02 3.31 16 20 N -0.73 -19.13 5.60 -59.91 -0.34 -19.46 16 21 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 22 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 24 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 25 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C -0.14 -1.78 7.39 -25.92 -0.19 -1.97 16 30 N -0.25 -2.90 11.92 33.42 0.40 -2.50 16 31 N -0.36 -3.16 6.83 33.50 0.23 -2.93 16 32 H 0.45 2.87 8.96 -190.44 -1.71 1.16 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.55 8.02 -51.93 -0.42 0.13 16 35 H 0.03 0.18 8.01 -51.93 -0.42 -0.24 16 36 H 0.05 0.20 7.73 -51.92 -0.40 -0.21 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.36 8.05 -51.93 -0.42 -0.06 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 43 H 0.41 5.09 8.43 -40.82 -0.34 4.74 16 44 H 0.09 1.44 7.90 -51.93 -0.41 1.03 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.02 0.41 7.84 -51.93 -0.41 0.01 16 48 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 49 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.10 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 417.12 15.07 6.29 6.29 Total: -1.00 -34.47 417.12 -11.81 -46.28 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -9.83 Total: 9.72 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.85 Total: -3.88 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -0.48 Total: -67.11 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.47 -11.81 -46.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276983566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.960 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds