Wall clock time and date at job start Wed Apr 1 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28866 * 125.95297 * 2 1 4 4 C 1.30936 * 108.99930 * 180.27197 * 3 2 1 5 5 N 1.32957 * 108.47487 * 359.72082 * 4 3 2 6 6 C 1.32151 * 107.31704 * 0.02562 * 5 4 3 7 7 C 1.47768 * 126.44158 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99781 * 186.00393 * 7 6 5 9 9 N 1.34781 * 120.00380 * 6.00530 * 7 6 5 10 10 C 1.46928 * 120.63755 * 6.47846 * 9 7 6 11 11 C 1.53192 * 108.79390 * 126.37400 * 10 9 7 12 12 C 1.53050 * 109.31841 * 54.65372 * 11 10 9 13 13 C 1.52942 * 109.54956 * 298.75474 * 12 11 10 14 14 C 1.53045 * 109.57580 * 301.18690 * 13 12 11 15 15 C 1.53056 * 109.25684 * 182.29023 * 14 13 12 16 16 N 1.46843 * 109.51744 * 59.08804 * 15 14 13 17 17 C 1.46897 * 111.00239 * 174.12865 * 16 15 14 18 18 C 1.50706 * 109.46857 * 63.48473 * 17 16 15 19 19 H 1.07999 * 119.99572 * 353.04164 * 18 17 16 20 20 C 1.37872 * 120.00358 * 173.04197 * 18 17 16 21 21 N 1.31507 * 120.00489 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99639 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47502 * 89.99934 * 22 20 18 24 24 H 1.48503 * 109.47131 * 210.00301 * 22 20 18 25 25 H 1.48508 * 109.47232 * 329.99933 * 22 20 18 26 26 C 1.46842 * 111.24818 * 298.26937 * 16 15 14 27 27 C 1.53049 * 109.59854 * 181.27080 * 13 12 11 28 28 C 1.46937 * 120.64516 * 186.49912 * 9 7 6 29 29 H 1.09005 * 109.46624 * 270.20228 * 1 2 3 30 30 H 1.08995 * 109.47041 * 30.19471 * 1 2 3 31 31 H 1.08998 * 109.47406 * 150.20080 * 1 2 3 32 32 H 1.07997 * 125.75960 * 179.68857 * 4 3 2 33 33 H 1.09005 * 109.57976 * 246.16062 * 10 9 7 34 34 H 1.08992 * 109.58932 * 6.43767 * 10 9 7 35 35 H 1.09005 * 109.49826 * 174.61444 * 11 10 9 36 36 H 1.09005 * 109.49538 * 294.70358 * 11 10 9 37 37 H 1.09006 * 109.45675 * 178.72994 * 12 11 10 38 38 H 1.09000 * 109.45864 * 58.78194 * 12 11 10 39 39 H 1.08995 * 109.50902 * 62.35774 * 14 13 12 40 40 H 1.08996 * 109.54298 * 302.24655 * 14 13 12 41 41 H 1.08997 * 109.46827 * 299.07409 * 15 14 13 42 42 H 1.09005 * 109.45397 * 179.09473 * 15 14 13 43 43 H 1.09000 * 109.47097 * 303.48887 * 17 16 15 44 44 H 1.08991 * 109.47449 * 183.48290 * 17 16 15 45 45 H 0.96998 * 120.00378 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.46423 * 181.74539 * 26 16 15 47 47 H 1.09006 * 109.45963 * 301.71653 * 26 16 15 48 48 H 1.09004 * 109.50582 * 297.63454 * 27 13 12 49 49 H 1.09005 * 109.50645 * 57.71511 * 27 13 12 50 50 H 1.08998 * 109.58172 * 113.72576 * 28 9 7 51 51 H 1.08997 * 109.58542 * 353.30160 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2217 1.0432 0.0000 4 6 3.4741 0.6614 -0.0059 5 7 3.5094 -0.6677 -0.0036 6 6 2.2587 -1.0945 0.0032 7 6 1.8119 -2.5029 0.0075 8 8 0.6296 -2.7658 -0.0964 9 7 2.7151 -3.4962 0.1266 10 6 4.1280 -3.1953 0.3945 11 6 4.5757 -3.9858 1.6280 12 6 4.2803 -5.4719 1.4117 13 6 2.7754 -5.6729 1.2266 14 6 2.0335 -5.1573 2.4619 15 6 0.5340 -5.4138 2.2937 16 7 0.2988 -6.8531 2.1221 17 6 -1.1392 -7.1522 2.0970 18 6 -1.7701 -6.4860 0.9014 19 1 -1.1898 -5.8092 0.2918 20 6 -3.0878 -6.7404 0.5859 21 7 -3.6385 -6.1587 -0.4571 22 14 -4.0916 -7.9105 1.6408 23 1 -4.7578 -7.1493 2.7279 24 1 -5.1195 -8.5763 0.8009 25 1 -3.1954 -8.9364 2.2323 26 6 0.9631 -7.3606 0.9149 27 6 2.4754 -7.1622 1.0417 28 6 2.3059 -4.9009 -0.0096 29 1 -0.3633 0.0036 1.0277 30 1 -0.3633 0.8882 -0.5168 31 1 -0.3634 -0.8917 -0.5107 32 1 4.3333 1.3156 -0.0121 33 1 4.7327 -3.4857 -0.4647 34 1 4.2455 -2.1277 0.5798 35 1 5.6458 -3.8460 1.7811 36 1 4.0330 -3.6309 2.5042 37 1 4.6185 -6.0393 2.2787 38 1 4.8053 -5.8207 0.5224 39 1 2.2095 -4.0873 2.5720 40 1 2.3948 -5.6786 3.3483 41 1 0.1701 -4.8792 1.4164 42 1 0.0040 -5.0623 3.1790 43 1 -1.6042 -6.7778 3.0089 44 1 -1.2850 -8.2303 2.0310 45 1 -4.5655 -6.3380 -0.6793 46 1 0.7444 -8.4222 0.7990 47 1 0.5973 -6.8174 0.0435 48 1 2.9669 -7.5231 0.1382 49 1 2.8450 -7.7177 1.9037 50 1 2.7611 -5.3291 -0.9026 51 1 1.2202 -4.9594 -0.0863 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:17 Heat of formation + Delta-G solvation = 59.048033 kcal Electronic energy + Delta-G solvation = -33141.988391 eV Core-core repulsion = 29077.994877 eV Total energy + Delta-G solvation = -4063.993514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.60443 -41.85546 -39.96968 -38.09746 -35.97944 -35.16164 -34.25303 -32.99059 -32.84155 -31.70450 -30.01511 -28.89122 -27.65021 -26.94522 -24.79111 -24.49018 -24.10033 -23.37289 -22.90173 -21.56308 -20.88713 -19.50493 -18.63509 -18.41053 -18.05688 -17.92987 -16.97610 -16.95511 -16.14700 -16.01706 -15.82300 -15.69353 -15.60395 -15.32315 -15.03214 -14.80818 -14.54357 -14.42125 -14.24236 -14.08927 -13.83888 -13.67377 -13.61772 -13.21455 -13.17909 -12.99876 -12.67937 -12.46838 -12.39240 -12.13347 -11.98257 -11.88391 -11.74556 -11.71538 -11.56374 -11.48993 -11.32778 -11.08506 -10.90308 -10.78611 -10.70135 -10.57920 -9.68571 -8.91388 -8.29408 -6.34513 -0.08897 0.98430 1.33286 1.34514 1.38147 1.46356 1.87747 1.98075 2.33215 2.83660 3.04269 3.32990 3.39248 3.60315 3.73714 3.79349 3.85200 4.13521 4.18481 4.21261 4.24437 4.30297 4.38427 4.42562 4.54980 4.58822 4.64774 4.70001 4.77976 4.82538 4.86545 4.94647 4.97162 5.02811 5.05358 5.08932 5.10195 5.18342 5.22095 5.22897 5.24698 5.28776 5.35691 5.39933 5.47095 5.54472 5.60529 5.70643 6.14459 6.17691 6.37763 6.49104 6.73644 6.76367 7.00036 7.31778 8.87109 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011386 B = 0.004011 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.512729 B = 6979.640164 C = 8891.358522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.263 5.263 3 N -0.317 5.317 4 C 0.163 3.837 5 N -0.470 5.470 6 C 0.156 3.844 7 C 0.587 3.413 8 O -0.559 6.559 9 N -0.572 5.572 10 C 0.070 3.930 11 C -0.129 4.129 12 C -0.101 4.101 13 C -0.061 4.061 14 C -0.086 4.086 15 C 0.060 3.940 16 N -0.524 5.524 17 C 0.158 3.842 18 C -0.543 4.543 19 H 0.031 0.969 20 C 0.010 3.990 21 N -0.948 5.948 22 Si 0.948 3.052 23 H -0.270 1.270 24 H -0.284 1.284 25 H -0.243 1.243 26 C 0.059 3.941 27 C -0.092 4.092 28 C 0.118 3.882 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.266 0.734 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.015 0.985 42 H 0.044 0.956 43 H 0.020 0.980 44 H 0.035 0.965 45 H 0.264 0.736 46 H 0.062 0.938 47 H 0.008 0.992 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.293 8.738 3.655 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.058 5.058 3 N -0.155 5.155 4 C -0.135 4.135 5 N -0.198 5.198 6 C -0.119 4.119 7 C 0.371 3.629 8 O -0.436 6.436 9 N -0.303 5.303 10 C -0.051 4.051 11 C -0.166 4.166 12 C -0.138 4.138 13 C -0.062 4.062 14 C -0.124 4.124 15 C -0.068 4.068 16 N -0.248 5.248 17 C 0.030 3.970 18 C -0.582 4.582 19 H 0.049 0.951 20 C -0.188 4.188 21 N -0.589 5.589 22 Si 0.772 3.228 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.166 1.166 26 C -0.070 4.070 27 C -0.130 4.130 28 C -0.004 4.004 29 H 0.118 0.882 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.282 0.718 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.027 0.973 48 H 0.103 0.897 49 H 0.106 0.894 50 H 0.099 0.901 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.764 8.796 3.906 22.886 hybrid contribution -2.187 0.102 -0.873 2.357 sum 18.577 8.897 3.033 20.820 Atomic orbital electron populations 1.22641 0.70597 1.06961 1.06218 1.47229 1.10133 1.02556 1.45852 1.74240 1.04961 1.13612 1.22701 1.26953 0.94877 0.90641 1.00981 1.70972 1.16730 1.11650 1.20460 1.24027 0.87663 0.91745 1.08426 1.16897 0.85314 0.82659 0.78020 1.90936 1.17454 1.83354 1.51819 1.47822 1.09993 1.05011 1.67450 1.22986 0.77763 1.05597 0.98783 1.21949 1.02801 0.94862 0.97028 1.21561 0.91998 0.96735 1.03511 1.20839 0.97182 0.94898 0.93314 1.21517 0.92633 0.99940 0.98310 1.21924 0.97026 0.89001 0.98871 1.62431 1.11073 1.14162 1.37087 1.20064 0.86274 0.96189 0.94465 1.21889 0.97149 1.26856 1.12315 0.95061 1.25931 0.99045 0.97632 0.96170 1.70110 1.13978 1.45614 1.29160 0.85702 0.78564 0.79854 0.78720 1.19512 1.20936 1.16632 1.21972 0.95032 0.99052 0.90927 1.21603 0.93367 0.94550 1.03468 1.21890 1.00606 0.79150 0.98778 0.88186 0.85782 0.88414 0.71800 0.90126 0.84376 0.87731 0.92510 0.89866 0.90120 0.92526 0.90215 0.96668 0.93712 0.96160 0.94740 0.92724 0.91926 0.97331 0.89667 0.89430 0.90110 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.80 10.92 127.77 1.40 3.20 16 2 N -0.26 -7.00 3.74 -361.52 -1.35 -8.36 16 3 N -0.32 -7.45 12.08 -61.29 -0.74 -8.19 16 4 C 0.16 3.07 13.03 180.79 2.36 5.43 16 5 N -0.47 -10.80 7.85 -193.33 -1.52 -12.31 16 6 C 0.16 4.46 7.54 136.70 1.03 5.49 16 7 C 0.59 19.84 7.68 86.76 0.67 20.51 16 8 O -0.56 -23.99 13.74 -3.89 -0.05 -24.04 16 9 N -0.57 -16.29 2.38 -822.52 -1.96 -18.25 16 10 C 0.07 1.39 6.13 86.36 0.53 1.92 16 11 C -0.13 -2.09 5.74 30.68 0.18 -1.91 16 12 C -0.10 -1.73 4.72 30.59 0.14 -1.58 16 13 C -0.06 -1.58 0.52 -52.13 -0.03 -1.61 16 14 C -0.09 -2.62 4.35 30.63 0.13 -2.48 16 15 C 0.06 2.49 4.85 86.33 0.42 2.91 16 16 N -0.52 -22.25 4.85 -900.88 -4.37 -26.62 16 17 C 0.16 7.85 4.22 85.56 0.36 8.21 16 18 C -0.54 -32.26 8.26 25.60 0.21 -32.05 16 19 H 0.03 2.11 6.12 -2.91 -0.02 2.10 16 20 C 0.01 0.59 5.47 84.65 0.46 1.05 16 21 N -0.95 -61.37 13.96 21.44 0.30 -61.07 16 22 Si 0.95 45.39 27.61 68.60 1.89 47.29 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.24 -10.74 6.35 99.48 0.63 -10.11 16 26 C 0.06 2.25 4.81 86.33 0.42 2.67 16 27 C -0.09 -2.45 4.89 30.63 0.15 -2.30 16 28 C 0.12 3.66 4.50 86.34 0.39 4.05 16 29 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.12 2.20 8.14 -2.39 -0.02 2.19 16 31 H 0.10 2.87 6.21 -2.39 -0.01 2.86 16 32 H 0.27 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.14 2.85 4.11 -21.85 -0.09 2.76 16 35 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.06 1.08 6.41 -2.38 -0.02 1.07 16 37 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.71 6.07 -2.39 -0.01 1.70 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.02 0.76 4.65 -2.39 -0.01 0.75 16 42 H 0.04 1.91 8.09 -2.38 -0.02 1.89 16 43 H 0.02 1.01 7.87 -2.39 -0.02 0.99 16 44 H 0.03 1.69 6.71 -2.39 -0.02 1.67 16 45 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 46 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 47 H 0.01 0.39 5.35 -2.38 -0.01 0.38 16 48 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 50 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.06 2.50 3.81 -2.39 -0.01 2.49 16 Total: -1.00 -78.51 375.72 1.81 -76.70 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.80 Total: 21.37 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 8.81 Total: 13.50 kcal Atomic # 7 Polarization: -125.17 SS G_CDS: -9.64 Total: -134.81 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.89 Total: 47.29 kcal Total: -78.51 1.81 -76.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.747 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds