Wall clock time and date at job start Wed Apr 1 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28869 * 125.94848 * 2 1 4 4 C 1.30928 * 109.00480 * 179.97438 * 3 2 1 5 5 N 1.32964 * 108.47365 * 359.76225 * 4 3 2 6 6 C 1.32153 * 107.31166 * 0.38490 * 5 4 3 7 7 C 1.47768 * 126.43932 * 179.87970 * 6 5 4 8 8 O 1.21559 * 119.99958 * 173.77392 * 7 6 5 9 9 N 1.34774 * 120.00522 * 353.77809 * 7 6 5 10 10 C 1.46927 * 120.62986 * 4.90226 * 9 7 6 11 11 C 1.53198 * 108.79945 * 233.62688 * 10 9 7 12 12 C 1.53056 * 109.30026 * 305.35182 * 11 10 9 13 13 C 1.52979 * 109.53132 * 61.30024 * 12 11 10 14 14 C 1.53071 * 109.49725 * 58.64345 * 13 12 11 15 15 C 1.53133 * 109.19730 * 62.42218 * 14 13 12 16 16 C 1.53177 * 109.19570 * 57.56148 * 15 14 13 17 17 N 1.46851 * 109.58798 * 300.85352 * 16 15 14 18 18 C 1.46901 * 111.00078 * 185.83074 * 17 16 15 19 19 C 1.50701 * 109.47001 * 300.68307 * 18 17 16 20 20 H 1.07994 * 120.00172 * 4.96032 * 19 18 17 21 21 C 1.37880 * 119.99465 * 184.96758 * 19 18 17 22 22 N 1.31519 * 119.99698 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00195 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46992 * 90.00334 * 23 21 19 25 25 H 1.48507 * 109.47208 * 210.00357 * 23 21 19 26 26 H 1.48502 * 109.47285 * 330.00142 * 23 21 19 27 27 C 1.46869 * 111.19060 * 61.74322 * 17 16 15 28 28 C 1.46937 * 120.63793 * 184.92003 * 9 7 6 29 29 H 1.09001 * 109.46756 * 270.01865 * 1 2 3 30 30 H 1.08994 * 109.47095 * 30.02668 * 1 2 3 31 31 H 1.09005 * 109.46487 * 150.02450 * 1 2 3 32 32 H 1.07999 * 125.76749 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.58411 * 113.83682 * 10 9 7 34 34 H 1.08995 * 109.69540 * 353.48696 * 10 9 7 35 35 H 1.08995 * 109.50212 * 185.39835 * 11 10 9 36 36 H 1.09002 * 109.52423 * 65.31074 * 11 10 9 37 37 H 1.09003 * 109.45530 * 301.27975 * 12 11 10 38 38 H 1.08995 * 109.45686 * 181.32090 * 12 11 10 39 39 H 1.08997 * 109.52644 * 182.35200 * 14 13 12 40 40 H 1.08998 * 109.52756 * 302.49014 * 14 13 12 41 41 H 1.08993 * 109.50863 * 177.56219 * 15 14 13 42 42 H 1.09007 * 109.50983 * 297.68694 * 15 14 13 43 43 H 1.08996 * 109.44136 * 180.81950 * 16 15 14 44 44 H 1.08993 * 109.43888 * 60.89163 * 16 15 14 45 45 H 1.09005 * 109.46777 * 60.67511 * 18 17 16 46 46 H 1.08995 * 109.47383 * 180.67798 * 18 17 16 47 47 H 0.97000 * 119.99587 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.46671 * 178.32646 * 27 17 16 49 49 H 1.09003 * 109.46787 * 58.34660 * 27 17 16 50 50 H 1.09003 * 109.59038 * 6.66659 * 28 9 7 51 51 H 1.09003 * 109.59426 * 246.24187 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0433 0.0000 4 6 3.4740 0.6617 0.0006 5 7 3.5095 -0.6675 0.0061 6 6 2.2588 -1.0943 0.0005 7 6 1.8121 -2.5028 0.0011 8 8 0.6302 -2.7656 0.1097 9 7 2.7149 -3.4963 -0.1186 10 6 4.1540 -3.2011 -0.1429 11 6 4.7676 -3.8379 -1.3939 12 6 4.4322 -5.3310 -1.4178 13 6 2.9144 -5.5133 -1.4762 14 6 2.3641 -4.8194 -2.7247 15 6 2.9583 -5.4807 -3.9716 16 6 2.6213 -6.9749 -3.9582 17 7 3.1708 -7.5926 -2.7445 18 6 2.9862 -9.0499 -2.7656 19 6 1.5166 -9.3687 -2.8637 20 1 0.7982 -8.5718 -2.9868 21 6 1.0893 -10.6778 -2.7962 22 7 -0.1933 -10.9561 -2.8813 23 14 2.3320 -12.0562 -2.5838 24 1 2.5451 -12.3119 -1.1366 25 1 1.8197 -13.2891 -3.2341 26 1 3.6190 -11.6635 -3.2120 27 6 2.5797 -7.0048 -1.5353 28 6 2.2789 -4.8952 -0.2278 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3632 -0.8903 -0.5135 32 1 4.3332 1.3160 0.0011 33 1 4.6271 -3.6155 0.7474 34 1 4.3073 -2.1223 -0.1695 35 1 5.8497 -3.7082 -1.3747 36 1 4.3595 -3.3590 -2.2840 37 1 4.8205 -5.8049 -0.5163 38 1 4.8873 -5.7913 -2.2947 39 1 1.2784 -4.9132 -2.7450 40 1 2.6384 -3.7646 -2.7060 41 1 2.5367 -5.0190 -4.8643 42 1 4.0407 -5.3520 -3.9711 43 1 3.0549 -7.4525 -4.8368 44 1 1.5390 -7.1028 -3.9726 45 1 3.5072 -9.4696 -3.6262 46 1 3.3912 -9.4807 -1.8500 47 1 -0.4939 -11.8771 -2.8341 48 1 2.9842 -7.5029 -0.6542 49 1 1.4976 -7.1335 -1.5605 50 1 1.1929 -4.9340 -0.3132 51 1 2.5978 -5.4476 0.6561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277937137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:09 Heat of formation + Delta-G solvation = 79.494195 kcal Electronic energy + Delta-G solvation = -32442.002799 eV Core-core repulsion = 28378.895897 eV Total energy + Delta-G solvation = -4063.106902 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.82373 -40.64181 -38.88887 -36.73364 -34.96353 -33.77709 -32.48869 -32.11778 -31.57847 -31.18868 -28.13907 -27.44629 -26.28606 -25.80927 -23.93771 -23.60841 -22.64544 -22.11247 -21.71316 -20.53654 -19.46367 -17.97784 -17.53698 -17.20446 -17.14864 -16.69279 -16.02316 -15.56090 -15.07063 -14.89042 -14.69618 -14.31529 -14.19931 -13.95621 -13.81566 -13.65249 -13.59112 -13.30939 -13.10577 -13.00461 -12.53046 -12.36260 -12.23380 -12.01509 -11.81687 -11.54393 -11.39924 -11.16224 -10.88933 -10.75815 -10.72432 -10.47660 -10.42252 -10.36794 -10.26574 -10.00817 -9.89682 -9.86578 -9.77796 -9.55829 -9.36774 -8.67699 -8.60062 -7.18214 -6.11447 -4.11367 0.78850 1.77787 2.13584 2.76344 2.90550 3.26471 3.34566 3.38206 3.68580 4.09900 4.32770 4.38543 4.73793 4.75500 4.84682 4.87260 5.03642 5.08381 5.16586 5.18798 5.24690 5.26740 5.48100 5.52982 5.60351 5.72656 5.74785 5.79758 5.89399 5.90607 5.94012 5.97353 6.01070 6.07734 6.21512 6.24930 6.34114 6.38895 6.44081 6.50706 6.59289 6.68150 6.72766 6.74825 6.90748 6.94573 7.08440 7.15132 7.55718 7.62171 7.84513 8.05603 8.11766 8.43911 8.91618 9.51606 11.01502 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020762 B = 0.002701 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.277760 B =10364.086440 C =10873.302513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.261 5.261 3 N -0.306 5.306 4 C 0.160 3.840 5 N -0.472 5.472 6 C 0.176 3.824 7 C 0.600 3.400 8 O -0.533 6.533 9 N -0.570 5.570 10 C 0.055 3.945 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.065 4.065 14 C -0.104 4.104 15 C -0.116 4.116 16 C 0.062 3.938 17 N -0.529 5.529 18 C 0.155 3.845 19 C -0.551 4.551 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.899 5.899 23 Si 0.879 3.121 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.264 1.264 27 C 0.076 3.924 28 C 0.121 3.879 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.224 0.776 33 H 0.065 0.935 34 H 0.153 0.847 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.028 0.972 46 H 0.024 0.976 47 H 0.263 0.737 48 H 0.065 0.935 49 H 0.046 0.954 50 H 0.094 0.906 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 22.539 5.619 24.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.055 5.055 3 N -0.143 5.143 4 C -0.138 4.138 5 N -0.200 5.200 6 C -0.099 4.099 7 C 0.383 3.617 8 O -0.409 6.409 9 N -0.301 5.301 10 C -0.067 4.067 11 C -0.171 4.171 12 C -0.140 4.140 13 C -0.066 4.066 14 C -0.142 4.142 15 C -0.154 4.154 16 C -0.067 4.067 17 N -0.252 5.252 18 C 0.029 3.971 19 C -0.590 4.590 20 H 0.093 0.907 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.706 3.294 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 C -0.053 4.053 28 C -0.001 4.001 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.240 0.760 33 H 0.083 0.917 34 H 0.169 0.831 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.042 0.958 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.113 0.887 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.749 22.765 5.694 24.713 hybrid contribution -0.489 -1.220 0.130 1.321 sum 7.260 21.546 5.824 23.470 Atomic orbital electron populations 1.22516 0.71272 1.06531 1.05577 1.47049 1.09529 1.02567 1.46365 1.74233 1.04223 1.13669 1.22193 1.26090 0.94286 0.90826 1.02633 1.70734 1.17691 1.10670 1.20912 1.24301 0.86714 0.92326 1.06575 1.16499 0.85517 0.81477 0.78238 1.90822 1.16006 1.82907 1.51200 1.47763 1.07404 1.06201 1.68686 1.23139 0.77978 1.07354 0.98203 1.21959 1.00332 0.96901 0.97928 1.21524 0.94647 0.94713 1.03148 1.20902 0.95953 0.96121 0.93673 1.21578 0.99829 0.98400 0.94348 1.21669 1.00872 0.96190 0.96629 1.21906 0.98823 0.92477 0.93468 1.62331 1.56038 1.05968 1.00868 1.20154 0.96203 0.84019 0.96766 1.21710 0.92124 0.94002 1.51150 0.90697 1.24981 0.94993 0.98832 0.94273 1.69933 1.14026 1.19520 1.50246 0.86801 0.82191 0.81752 0.78673 1.20229 1.21377 1.18855 1.21786 0.98625 0.90777 0.94092 1.21852 1.01310 0.78641 0.98298 0.88840 0.88301 0.86566 0.75956 0.91701 0.83115 0.91080 0.91607 0.92341 0.89771 0.92501 0.92680 0.92670 0.91648 0.91855 0.93864 0.95418 0.95765 0.92704 0.91662 0.93593 0.88717 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.80 59.85 0.65 1.26 16 2 N -0.26 -2.74 3.74 -65.62 -0.25 -2.98 16 3 N -0.31 -3.14 12.07 29.28 0.35 -2.79 16 4 C 0.16 1.43 13.03 -91.88 -1.20 0.23 16 5 N -0.47 -5.01 7.73 -12.46 -0.10 -5.11 16 6 C 0.18 2.07 7.60 -155.27 -1.18 0.89 16 7 C 0.60 7.88 7.69 -12.37 -0.10 7.79 16 8 O -0.53 -7.96 14.20 5.31 0.08 -7.88 16 9 N -0.57 -7.08 2.45 -173.94 -0.43 -7.51 16 10 C 0.06 0.59 6.32 -3.71 -0.02 0.57 16 11 C -0.13 -1.42 5.74 -26.60 -0.15 -1.57 16 12 C -0.10 -1.30 4.25 -26.71 -0.11 -1.42 16 13 C -0.07 -0.93 0.51 -154.44 -0.08 -1.01 16 14 C -0.10 -1.52 4.33 -26.63 -0.12 -1.63 16 15 C -0.12 -1.73 5.76 -26.57 -0.15 -1.88 16 16 C 0.06 1.15 5.03 -3.76 -0.02 1.14 16 17 N -0.53 -10.38 4.13 -236.04 -0.97 -11.36 16 18 C 0.16 3.62 4.19 -4.97 -0.02 3.60 16 19 C -0.55 -15.01 8.29 -34.44 -0.29 -15.30 16 20 H 0.08 2.23 6.10 -52.49 -0.32 1.91 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 23 Si 0.88 21.19 27.37 -169.99 -4.65 16.54 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.26 -6.12 6.69 56.52 0.38 -5.74 16 27 C 0.08 1.38 3.85 -3.86 -0.01 1.36 16 28 C 0.12 1.64 5.10 -3.74 -0.02 1.62 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.12 0.98 6.46 -51.93 -0.34 0.64 16 32 H 0.22 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.15 1.59 3.70 -78.15 -0.29 1.30 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.75 6.29 -51.93 -0.33 0.43 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.19 6.05 -51.93 -0.31 0.87 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.76 5.92 -51.93 -0.31 0.45 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.93 6.62 -51.92 -0.34 0.59 16 43 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 44 H 0.04 0.93 6.55 -51.93 -0.34 0.59 16 45 H 0.03 0.66 7.54 -51.93 -0.39 0.27 16 46 H 0.02 0.57 7.24 -51.93 -0.38 0.19 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 49 H 0.05 0.96 7.06 -51.93 -0.37 0.60 16 50 H 0.09 1.43 7.04 -51.93 -0.37 1.07 16 51 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -31.79 378.76 -10.29 -42.08 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.88 Total: 2.16 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.92 Total: -2.43 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.62 Total: -56.17 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.08 Total: -7.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.65 Total: 16.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.79 -10.29 -42.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277937137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.570 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds