Wall clock time and date at job start Wed Apr 1 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28869 * 125.94848 * 2 1 4 4 C 1.30928 * 109.00480 * 179.97438 * 3 2 1 5 5 N 1.32964 * 108.47365 * 359.76225 * 4 3 2 6 6 C 1.32153 * 107.31166 * 0.38490 * 5 4 3 7 7 C 1.47768 * 126.43932 * 179.87970 * 6 5 4 8 8 O 1.21559 * 119.99958 * 173.77392 * 7 6 5 9 9 N 1.34774 * 120.00522 * 353.77809 * 7 6 5 10 10 C 1.46927 * 120.62986 * 4.90226 * 9 7 6 11 11 C 1.53198 * 108.79945 * 233.62688 * 10 9 7 12 12 C 1.53056 * 109.30026 * 305.35182 * 11 10 9 13 13 C 1.52979 * 109.53132 * 61.30024 * 12 11 10 14 14 C 1.53071 * 109.49725 * 58.64345 * 13 12 11 15 15 C 1.53133 * 109.19730 * 62.42218 * 14 13 12 16 16 C 1.53177 * 109.19570 * 57.56148 * 15 14 13 17 17 N 1.46851 * 109.58798 * 300.85352 * 16 15 14 18 18 C 1.46901 * 111.00078 * 185.83074 * 17 16 15 19 19 C 1.50701 * 109.47001 * 300.68307 * 18 17 16 20 20 H 1.07994 * 120.00172 * 4.96032 * 19 18 17 21 21 C 1.37880 * 119.99465 * 184.96758 * 19 18 17 22 22 N 1.31519 * 119.99698 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00195 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46992 * 90.00334 * 23 21 19 25 25 H 1.48507 * 109.47208 * 210.00357 * 23 21 19 26 26 H 1.48502 * 109.47285 * 330.00142 * 23 21 19 27 27 C 1.46869 * 111.19060 * 61.74322 * 17 16 15 28 28 C 1.46937 * 120.63793 * 184.92003 * 9 7 6 29 29 H 1.09001 * 109.46756 * 270.01865 * 1 2 3 30 30 H 1.08994 * 109.47095 * 30.02668 * 1 2 3 31 31 H 1.09005 * 109.46487 * 150.02450 * 1 2 3 32 32 H 1.07999 * 125.76749 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.58411 * 113.83682 * 10 9 7 34 34 H 1.08995 * 109.69540 * 353.48696 * 10 9 7 35 35 H 1.08995 * 109.50212 * 185.39835 * 11 10 9 36 36 H 1.09002 * 109.52423 * 65.31074 * 11 10 9 37 37 H 1.09003 * 109.45530 * 301.27975 * 12 11 10 38 38 H 1.08995 * 109.45686 * 181.32090 * 12 11 10 39 39 H 1.08997 * 109.52644 * 182.35200 * 14 13 12 40 40 H 1.08998 * 109.52756 * 302.49014 * 14 13 12 41 41 H 1.08993 * 109.50863 * 177.56219 * 15 14 13 42 42 H 1.09007 * 109.50983 * 297.68694 * 15 14 13 43 43 H 1.08996 * 109.44136 * 180.81950 * 16 15 14 44 44 H 1.08993 * 109.43888 * 60.89163 * 16 15 14 45 45 H 1.09005 * 109.46777 * 60.67511 * 18 17 16 46 46 H 1.08995 * 109.47383 * 180.67798 * 18 17 16 47 47 H 0.97000 * 119.99587 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.46671 * 178.32646 * 27 17 16 49 49 H 1.09003 * 109.46787 * 58.34660 * 27 17 16 50 50 H 1.09003 * 109.59038 * 6.66659 * 28 9 7 51 51 H 1.09003 * 109.59426 * 246.24187 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0433 0.0000 4 6 3.4740 0.6617 0.0006 5 7 3.5095 -0.6675 0.0061 6 6 2.2588 -1.0943 0.0005 7 6 1.8121 -2.5028 0.0011 8 8 0.6302 -2.7656 0.1097 9 7 2.7149 -3.4963 -0.1186 10 6 4.1540 -3.2011 -0.1429 11 6 4.7676 -3.8379 -1.3939 12 6 4.4322 -5.3310 -1.4178 13 6 2.9144 -5.5133 -1.4762 14 6 2.3641 -4.8194 -2.7247 15 6 2.9583 -5.4807 -3.9716 16 6 2.6213 -6.9749 -3.9582 17 7 3.1708 -7.5926 -2.7445 18 6 2.9862 -9.0499 -2.7656 19 6 1.5166 -9.3687 -2.8637 20 1 0.7982 -8.5718 -2.9868 21 6 1.0893 -10.6778 -2.7962 22 7 -0.1933 -10.9561 -2.8813 23 14 2.3320 -12.0562 -2.5838 24 1 2.5451 -12.3119 -1.1366 25 1 1.8197 -13.2891 -3.2341 26 1 3.6190 -11.6635 -3.2120 27 6 2.5797 -7.0048 -1.5353 28 6 2.2789 -4.8952 -0.2278 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3632 -0.8903 -0.5135 32 1 4.3332 1.3160 0.0011 33 1 4.6271 -3.6155 0.7474 34 1 4.3073 -2.1223 -0.1695 35 1 5.8497 -3.7082 -1.3747 36 1 4.3595 -3.3590 -2.2840 37 1 4.8205 -5.8049 -0.5163 38 1 4.8873 -5.7913 -2.2947 39 1 1.2784 -4.9132 -2.7450 40 1 2.6384 -3.7646 -2.7060 41 1 2.5367 -5.0190 -4.8643 42 1 4.0407 -5.3520 -3.9711 43 1 3.0549 -7.4525 -4.8368 44 1 1.5390 -7.1028 -3.9726 45 1 3.5072 -9.4696 -3.6262 46 1 3.3912 -9.4807 -1.8500 47 1 -0.4939 -11.8771 -2.8341 48 1 2.9842 -7.5029 -0.6542 49 1 1.4976 -7.1335 -1.5605 50 1 1.1929 -4.9340 -0.3132 51 1 2.5978 -5.4476 0.6561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277937137.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:08 Heat of formation + Delta-G solvation = 60.604238 kcal Electronic energy + Delta-G solvation = -32442.821929 eV Core-core repulsion = 28378.895897 eV Total energy + Delta-G solvation = -4063.926032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.58581 -41.76794 -40.11429 -37.99205 -35.90028 -35.16649 -34.09742 -33.18681 -32.83674 -32.33514 -29.37079 -28.83083 -27.48548 -26.79234 -25.61688 -24.51504 -23.53325 -23.25325 -23.11005 -21.82438 -20.67339 -19.42405 -18.66877 -18.35686 -18.07724 -17.92864 -17.08963 -16.87877 -16.27890 -15.98034 -15.79126 -15.76574 -15.52050 -15.33820 -15.02746 -14.84278 -14.58566 -14.47068 -14.21334 -14.09256 -13.89016 -13.59130 -13.47472 -13.19179 -13.00776 -13.00037 -12.89974 -12.68618 -12.30466 -12.12409 -12.03307 -11.87468 -11.73493 -11.59054 -11.51757 -11.45363 -11.32632 -11.18432 -10.96315 -10.78903 -10.66840 -10.44066 -9.69428 -8.95631 -8.31531 -6.36875 -0.07721 0.99738 1.35790 1.37274 1.38673 1.49543 1.87551 1.99717 2.33955 2.82932 3.04059 3.27725 3.39886 3.58493 3.72460 3.82232 3.90647 4.14685 4.21177 4.26459 4.27285 4.29709 4.36279 4.46340 4.52816 4.58575 4.62128 4.67481 4.74768 4.82160 4.87512 4.93749 4.96215 4.96495 5.00781 5.05876 5.14072 5.17128 5.18247 5.23767 5.26541 5.27872 5.37775 5.40648 5.52430 5.54016 5.69741 5.81529 6.11073 6.18065 6.36044 6.44552 6.70551 6.71483 7.01390 7.30459 8.85042 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020762 B = 0.002701 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.277760 B =10364.086440 C =10873.302513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.261 5.261 3 N -0.316 5.316 4 C 0.164 3.836 5 N -0.473 5.473 6 C 0.158 3.842 7 C 0.596 3.404 8 O -0.561 6.561 9 N -0.569 5.569 10 C 0.055 3.945 11 C -0.124 4.124 12 C -0.097 4.097 13 C -0.055 4.055 14 C -0.098 4.098 15 C -0.104 4.104 16 C 0.063 3.937 17 N -0.516 5.516 18 C 0.161 3.839 19 C -0.549 4.549 20 H 0.031 0.969 21 C 0.008 3.992 22 N -0.950 5.950 23 Si 0.951 3.049 24 H -0.266 1.266 25 H -0.287 1.287 26 H -0.243 1.243 27 C 0.080 3.920 28 C 0.126 3.874 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.263 0.737 33 H 0.076 0.924 34 H 0.159 0.841 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.002 0.998 45 H 0.031 0.969 46 H 0.032 0.968 47 H 0.265 0.735 48 H 0.068 0.932 49 H 0.003 0.997 50 H 0.070 0.930 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.623 24.238 6.113 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.056 5.056 3 N -0.154 5.154 4 C -0.133 4.133 5 N -0.201 5.201 6 C -0.117 4.117 7 C 0.381 3.619 8 O -0.439 6.439 9 N -0.299 5.299 10 C -0.066 4.066 11 C -0.161 4.161 12 C -0.134 4.134 13 C -0.056 4.056 14 C -0.136 4.136 15 C -0.141 4.141 16 C -0.066 4.066 17 N -0.238 5.238 18 C 0.033 3.967 19 C -0.588 4.588 20 H 0.049 0.951 21 C -0.189 4.189 22 N -0.591 5.591 23 Si 0.774 3.226 24 H -0.191 1.191 25 H -0.213 1.213 26 H -0.166 1.166 27 C -0.049 4.049 28 C 0.003 3.997 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.278 0.722 33 H 0.095 0.905 34 H 0.175 0.825 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.020 0.980 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.021 0.979 50 H 0.088 0.912 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.426 24.496 6.187 27.729 hybrid contribution -1.724 -1.640 -0.027 2.379 sum 9.703 22.856 6.160 25.583 Atomic orbital electron populations 1.22676 0.70181 1.06983 1.06454 1.47275 1.10335 1.02309 1.45720 1.74256 1.04875 1.13618 1.22630 1.26908 0.94942 0.90590 1.00905 1.70675 1.17015 1.11584 1.20875 1.23995 0.87571 0.91790 1.08385 1.16718 0.85196 0.82302 0.77727 1.90808 1.17196 1.83518 1.52355 1.47792 1.08293 1.05344 1.68434 1.23304 0.76549 1.07917 0.98801 1.21908 1.01904 0.94759 0.97574 1.21473 0.92238 0.96568 1.03152 1.20776 0.97880 0.93049 0.93936 1.21523 0.98209 0.99357 0.94509 1.21598 1.02170 0.92992 0.97385 1.21934 0.96178 0.95372 0.93101 1.62384 1.55526 1.04142 1.01750 1.20043 0.93134 0.86513 0.97004 1.21941 0.93750 0.93000 1.50117 0.95103 1.25971 0.97042 1.01898 0.94024 1.70099 1.16543 1.20245 1.52205 0.85651 0.79973 0.77748 0.79199 1.19126 1.21280 1.16623 1.21781 0.95878 0.93729 0.93517 1.21645 0.99870 0.79865 0.98273 0.87768 0.86066 0.87867 0.72181 0.90536 0.82475 0.88464 0.92068 0.91608 0.90525 0.95156 0.90998 0.91184 0.89559 0.91837 0.97985 0.95118 0.94984 0.92607 0.91338 0.97853 0.91166 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 10.80 127.77 1.38 2.49 16 2 N -0.26 -5.16 3.74 -361.52 -1.35 -6.51 16 3 N -0.32 -5.80 12.07 -61.29 -0.74 -6.54 16 4 C 0.16 2.44 13.03 180.79 2.36 4.80 16 5 N -0.47 -8.86 7.73 -193.33 -1.49 -10.35 16 6 C 0.16 3.50 7.60 136.70 1.04 4.54 16 7 C 0.60 15.54 7.69 86.76 0.67 16.21 16 8 O -0.56 -17.34 14.20 -3.90 -0.06 -17.39 16 9 N -0.57 -13.60 2.45 -822.51 -2.02 -15.62 16 10 C 0.06 1.02 6.32 86.36 0.55 1.57 16 11 C -0.12 -2.20 5.74 30.68 0.18 -2.02 16 12 C -0.10 -2.21 4.25 30.61 0.13 -2.08 16 13 C -0.06 -1.57 0.51 -52.14 -0.03 -1.59 16 14 C -0.10 -2.88 4.33 30.66 0.13 -2.74 16 15 C -0.10 -3.01 5.76 30.70 0.18 -2.84 16 16 C 0.06 2.40 5.03 86.37 0.43 2.84 16 17 N -0.52 -20.39 4.13 -900.71 -3.72 -24.10 16 18 C 0.16 7.50 4.19 85.56 0.36 7.85 16 19 C -0.55 -31.22 8.29 25.60 0.21 -31.01 16 20 H 0.03 1.98 6.10 -2.91 -0.02 1.97 16 21 C 0.01 0.48 5.47 84.65 0.46 0.94 16 22 N -0.95 -59.90 13.96 21.45 0.30 -59.60 16 23 Si 0.95 43.79 27.37 68.60 1.88 45.67 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.24 -10.29 6.69 99.48 0.67 -9.63 16 27 C 0.08 2.98 3.85 86.30 0.33 3.32 16 28 C 0.13 3.46 5.10 86.34 0.44 3.90 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.79 6.46 -2.38 -0.02 1.78 16 32 H 0.26 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.16 2.84 3.70 -54.16 -0.20 2.64 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.18 6.29 -2.39 -0.01 1.17 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.92 6.05 -2.39 -0.01 1.90 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.89 5.92 -2.39 -0.01 1.88 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.09 2.21 6.62 -2.38 -0.02 2.20 16 43 H 0.06 2.40 8.12 -2.39 -0.02 2.38 16 44 H 0.00 0.08 6.55 -2.39 -0.02 0.07 16 45 H 0.03 1.43 7.54 -2.38 -0.02 1.41 16 46 H 0.03 1.46 7.24 -2.39 -0.02 1.44 16 47 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 48 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 49 H 0.00 0.14 7.06 -2.39 -0.02 0.13 16 50 H 0.07 2.28 7.04 -2.39 -0.02 2.26 16 51 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -72.50 378.76 2.33 -70.17 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.71 Total: 18.12 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 8.82 Total: 6.16 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -9.02 Total: -122.73 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.06 Total: -17.39 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -72.50 2.33 -70.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277937137.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.770 kcal (2) G-P(sol) polarization free energy of solvation -72.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds