Wall clock time and date at job start Wed Apr 1 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28866 * 125.95384 * 2 1 4 4 C 1.30935 * 109.00250 * 180.28105 * 3 2 1 5 5 N 1.32953 * 108.47054 * 359.72392 * 4 3 2 6 6 C 1.32150 * 107.32269 * 359.97438 * 5 4 3 7 7 C 1.47770 * 126.44660 * 179.97438 * 6 5 4 8 8 O 1.21559 * 119.99798 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00283 * 0.03065 * 7 6 5 10 10 C 1.46502 * 120.00224 * 179.97438 * 9 7 6 11 11 C 1.54610 * 112.64623 * 61.44853 * 10 9 7 12 12 C 1.53939 * 106.23235 * 148.54714 * 11 10 9 13 13 C 1.54614 * 106.23040 * 0.02562 * 12 11 10 14 14 N 1.46895 * 112.64920 * 212.18772 * 13 12 11 15 15 C 1.46906 * 110.99789 * 298.54242 * 14 13 12 16 16 C 1.53002 * 109.47053 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.46999 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00355 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99521 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00556 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47148 * 59.99955 * 21 19 17 23 23 H 1.48498 * 109.47295 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46848 * 299.99842 * 21 19 17 25 25 C 1.55149 * 113.28074 * 178.69393 * 10 9 7 26 26 C 1.53873 * 107.42070 * 87.69446 * 13 12 11 27 27 C 1.54272 * 108.35268 * 313.71876 * 26 13 12 28 28 C 1.52992 * 110.85468 * 304.83271 * 27 26 13 29 29 H 1.09003 * 109.47464 * 270.18602 * 1 2 3 30 30 H 1.09005 * 109.47235 * 30.17863 * 1 2 3 31 31 H 1.08991 * 109.47200 * 150.18052 * 1 2 3 32 32 H 1.07996 * 125.76671 * 179.74205 * 4 3 2 33 33 H 0.97003 * 119.99881 * 359.97438 * 9 7 6 34 34 H 1.09001 * 110.10777 * 29.35785 * 11 10 9 35 35 H 1.08997 * 110.15382 * 267.76583 * 11 10 9 36 36 H 1.09000 * 110.10069 * 240.81052 * 12 11 10 37 37 H 1.09001 * 110.10025 * 119.19351 * 12 11 10 38 38 H 1.00902 * 111.00273 * 62.49764 * 14 13 12 39 39 H 1.08992 * 109.47459 * 299.99826 * 15 14 13 40 40 H 1.09004 * 109.47040 * 59.99976 * 15 14 13 41 41 H 1.09001 * 109.47142 * 300.00160 * 16 15 14 42 42 H 1.09004 * 109.47006 * 60.00213 * 16 15 14 43 43 H 0.96999 * 120.00022 * 179.97438 * 20 19 17 44 44 H 1.08997 * 111.01641 * 78.31086 * 25 10 9 45 45 H 1.09001 * 111.01471 * 314.43335 * 25 10 9 46 46 H 1.08997 * 109.54535 * 73.72653 * 26 13 12 47 47 H 1.09004 * 109.54577 * 194.00146 * 26 13 12 48 48 H 1.09002 * 109.19849 * 184.33214 * 27 26 13 49 49 H 1.09006 * 108.80054 * 65.08183 * 27 26 13 50 50 H 1.08998 * 109.54258 * 295.89807 * 28 27 26 51 51 H 1.08991 * 109.54863 * 175.61148 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0432 0.0000 4 6 3.4740 0.6614 -0.0061 5 7 3.5093 -0.6676 -0.0040 6 6 2.2587 -1.0944 0.0041 7 6 1.8118 -2.5029 0.0086 8 8 0.6245 -2.7638 0.0155 9 7 2.7204 -3.4983 0.0051 10 6 2.2773 -4.8947 0.0101 11 6 1.4400 -5.2581 -1.2377 12 6 1.7222 -6.7433 -1.5277 13 6 2.7176 -7.2141 -0.4422 14 7 3.6384 -8.2495 -0.9299 15 6 2.9047 -9.4506 -1.3507 16 6 3.8951 -10.5038 -1.8517 17 6 3.1425 -11.7362 -2.2827 18 1 2.0655 -11.7652 -2.2074 19 6 3.8287 -12.8267 -2.7734 20 7 5.1403 -12.7915 -2.8647 21 14 2.8959 -14.3541 -3.3084 22 1 1.9542 -14.0015 -4.4011 23 1 3.8571 -15.3768 -3.7934 24 1 2.1346 -14.8984 -2.1553 25 6 3.4497 -5.9102 -0.0273 26 6 1.8913 -7.6821 0.7685 27 6 0.8061 -6.6236 1.0545 28 6 1.4316 -5.2410 1.2488 29 1 -0.3634 0.0033 1.0277 30 1 -0.3634 0.8884 -0.5166 31 1 -0.3633 -0.8915 -0.5110 32 1 4.3333 1.3156 -0.0115 33 1 3.6678 -3.2901 -0.0008 34 1 1.7466 -4.6460 -2.0860 35 1 0.3794 -5.1111 -1.0341 36 1 2.1663 -6.8541 -2.5170 37 1 0.7991 -7.3194 -1.4642 38 1 4.2150 -7.8969 -1.6791 39 1 2.3460 -9.8503 -0.5044 40 1 2.2135 -9.1918 -2.1528 41 1 4.4535 -10.1039 -2.6981 42 1 4.5866 -10.7627 -1.0498 43 1 5.6232 -13.5589 -3.2095 44 1 3.9074 -6.0153 0.9563 45 1 4.1913 -5.6238 -0.7731 46 1 1.4260 -8.6417 0.5434 47 1 2.5427 -7.7858 1.6364 48 1 0.2616 -6.9031 1.9565 49 1 0.1155 -6.5920 0.2116 50 1 2.0677 -5.2497 2.1338 51 1 0.6435 -4.4982 1.3716 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277943039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:33 Heat of formation + Delta-G solvation = 29.606683 kcal Electronic energy + Delta-G solvation = -31148.903276 eV Core-core repulsion = 27083.633089 eV Total energy + Delta-G solvation = -4065.270187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.52635 -42.19032 -40.15188 -37.06474 -35.88021 -35.16092 -34.50844 -33.01390 -32.65157 -31.41832 -30.00348 -29.11234 -28.59369 -26.13614 -25.49812 -24.44340 -23.56009 -23.21616 -22.49164 -21.77235 -20.12066 -19.75477 -19.13536 -18.51248 -17.91243 -17.67987 -17.55132 -16.95115 -16.50042 -16.15452 -15.90701 -15.66081 -15.48269 -15.28941 -14.93381 -14.80951 -14.24414 -14.18155 -14.06627 -13.98438 -13.65139 -13.47167 -13.37014 -13.12794 -13.05292 -12.96557 -12.73974 -12.48804 -12.30819 -12.19502 -12.01900 -11.76687 -11.61018 -11.55746 -11.44752 -11.40926 -11.37507 -11.28236 -11.12028 -10.90105 -10.66514 -10.53393 -10.16105 -9.19313 -8.18344 -6.29266 -0.05296 1.04205 1.37323 1.41016 1.43929 1.51762 1.93149 2.03058 2.41563 2.91826 3.12590 3.15029 3.41494 3.52508 3.65759 3.66905 3.85378 4.10915 4.19684 4.23940 4.24658 4.28082 4.29695 4.32535 4.34635 4.51162 4.61341 4.62524 4.67017 4.72472 4.89683 4.90681 4.98690 5.05928 5.08434 5.13430 5.15298 5.19163 5.21670 5.24805 5.29375 5.30678 5.33272 5.43724 5.49257 5.54144 5.72196 5.83126 6.18730 6.25040 6.34613 6.60280 6.83281 6.88228 7.01430 7.39625 8.93353 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026556 B = 0.001949 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.128033 B =14362.247121 C =14723.616700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.261 5.261 3 N -0.318 5.318 4 C 0.160 3.840 5 N -0.488 5.488 6 C 0.146 3.854 7 C 0.612 3.388 8 O -0.536 6.536 9 N -0.675 5.675 10 C 0.175 3.825 11 C -0.107 4.107 12 C -0.145 4.145 13 C 0.113 3.887 14 N -0.676 5.676 15 C 0.088 3.912 16 C 0.032 3.968 17 C -0.542 4.542 18 H 0.059 0.941 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.964 3.036 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.267 1.267 25 C -0.101 4.101 26 C -0.107 4.107 27 C -0.109 4.109 28 C -0.116 4.116 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.256 0.744 33 H 0.420 0.580 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.340 0.660 39 H 0.060 0.940 40 H 0.018 0.982 41 H -0.010 1.010 42 H -0.006 1.006 43 H 0.263 0.737 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 28.211 8.354 30.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.057 5.057 3 N -0.156 5.156 4 C -0.139 4.139 5 N -0.216 5.216 6 C -0.130 4.130 7 C 0.394 3.606 8 O -0.412 6.412 9 N -0.325 5.325 10 C 0.089 3.911 11 C -0.146 4.146 12 C -0.185 4.185 13 C 0.021 3.979 14 N -0.305 5.305 15 C -0.041 4.041 16 C -0.006 4.006 17 C -0.581 4.581 18 H 0.077 0.923 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.192 1.192 25 C -0.139 4.139 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.154 4.154 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.272 0.728 33 H 0.258 0.742 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.158 0.842 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.008 0.992 42 H 0.013 0.987 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.366 28.077 8.939 30.918 hybrid contribution -0.069 -0.671 -1.385 1.540 sum -9.435 27.405 7.554 29.952 Atomic orbital electron populations 1.22741 0.69923 1.07286 1.06544 1.47337 1.10407 1.02240 1.45684 1.74240 1.04868 1.13976 1.22517 1.26690 0.94941 0.90401 1.01834 1.71205 1.18430 1.12407 1.19512 1.24201 0.87396 0.92484 1.08872 1.16383 0.85645 0.81593 0.76951 1.90787 1.16151 1.83338 1.50917 1.45415 1.10465 1.04389 1.72267 1.21287 0.95044 0.78608 0.96194 1.22375 1.00656 0.95025 0.96585 1.22917 1.00413 0.96139 0.99031 1.21960 0.91012 0.90494 0.94450 1.60429 1.23079 1.05626 1.41365 1.21732 0.95311 0.89749 0.97293 1.18921 0.94404 0.92947 0.94294 1.21575 0.93785 1.00359 1.42370 0.92250 1.25962 0.95771 1.02247 0.95827 1.70101 1.08005 1.31836 1.47114 0.85514 0.78271 0.78390 0.78945 1.19234 1.20893 1.19174 1.22792 0.95882 0.91956 1.03260 1.22020 0.97144 0.98305 0.96995 1.21738 0.97431 0.93169 1.02395 1.22003 0.99626 0.97343 0.96422 0.87700 0.86508 0.86929 0.72795 0.74213 0.92323 0.90657 0.92827 0.91648 0.84193 0.92115 0.96335 0.99188 0.98746 0.92816 0.89297 0.90161 0.92610 0.91332 0.90491 0.91553 0.91004 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.85 127.77 1.39 2.16 16 2 N -0.26 -4.43 3.74 -361.53 -1.35 -5.79 16 3 N -0.32 -5.55 12.08 -61.30 -0.74 -6.29 16 4 C 0.16 2.45 13.03 180.79 2.36 4.81 16 5 N -0.49 -9.10 11.09 -193.33 -2.14 -11.24 16 6 C 0.15 2.79 7.83 136.70 1.07 3.86 16 7 C 0.61 11.85 7.39 86.76 0.64 12.49 16 8 O -0.54 -11.54 12.06 -3.90 -0.05 -11.59 16 9 N -0.68 -11.75 5.31 -418.62 -2.22 -13.98 16 10 C 0.17 3.32 1.08 5.20 0.01 3.33 16 11 C -0.11 -2.30 4.58 31.46 0.14 -2.16 16 12 C -0.14 -3.60 4.33 31.46 0.14 -3.47 16 13 C 0.11 2.91 0.98 5.12 0.01 2.92 16 14 N -0.68 -22.61 6.35 -462.33 -2.94 -25.55 16 15 C 0.09 3.59 5.09 86.30 0.44 4.02 16 16 C 0.03 1.68 5.23 29.85 0.16 1.84 16 17 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 19 C 0.00 0.00 5.46 84.65 0.46 0.46 16 20 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 21 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 C -0.10 -2.06 5.43 32.08 0.17 -1.89 16 26 C -0.11 -2.63 4.98 31.32 0.16 -2.48 16 27 C -0.11 -2.17 5.52 31.02 0.17 -2.00 16 28 C -0.12 -2.17 4.93 30.91 0.15 -2.02 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.12 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.11 1.30 6.33 -2.39 -0.02 1.29 16 32 H 0.26 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.42 6.42 8.37 -92.71 -0.78 5.64 16 34 H 0.06 1.28 8.13 -2.39 -0.02 1.27 16 35 H 0.07 1.67 6.69 -2.39 -0.02 1.66 16 36 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 37 H 0.06 1.69 6.96 -2.39 -0.02 1.67 16 38 H 0.34 11.17 8.78 -89.69 -0.79 10.38 16 39 H 0.06 2.49 6.38 -2.39 -0.02 2.47 16 40 H 0.02 0.75 7.30 -2.38 -0.02 0.73 16 41 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.09 1.74 7.86 -2.39 -0.02 1.72 16 45 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.06 1.57 6.32 -2.39 -0.02 1.55 16 47 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 48 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.07 1.38 5.27 -2.38 -0.01 1.37 16 50 H 0.07 1.26 8.02 -2.39 -0.02 1.24 16 51 H 0.07 1.52 6.29 -2.39 -0.02 1.51 16 Total: -1.00 -69.24 392.45 -0.04 -69.28 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.60 Total: 24.14 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 7.69 Total: -8.76 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -9.11 Total: -119.37 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.05 Total: -11.59 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.24 -0.04 -69.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.887 kcal (2) G-P(sol) polarization free energy of solvation -69.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds