Wall clock time and date at job start Wed Apr 1 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28862 * 125.95297 * 2 1 4 4 C 1.30926 * 109.00613 * 180.30025 * 3 2 1 5 5 N 1.32959 * 108.47431 * 359.72801 * 4 3 2 6 6 C 1.32152 * 107.31324 * 359.97438 * 5 4 3 7 7 C 1.47776 * 126.44092 * 180.02562 * 6 5 4 8 8 O 1.21561 * 119.99391 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00075 * 359.75277 * 7 6 5 10 10 C 1.47481 * 125.66518 * 359.68876 * 9 7 6 11 11 C 1.55282 * 104.78511 * 155.88930 * 10 9 7 12 12 C 1.54467 * 101.41626 * 36.65898 * 11 10 9 13 13 C 1.47192 * 125.66171 * 180.02562 * 9 7 6 14 14 C 1.52313 * 110.27857 * 83.61268 * 12 11 10 15 15 C 1.53184 * 109.34686 * 178.30977 * 14 12 11 16 16 N 1.46858 * 109.43408 * 302.04591 * 15 14 12 17 17 C 1.46901 * 111.00132 * 186.49135 * 16 15 14 18 18 C 1.53000 * 109.47160 * 45.62380 * 17 16 15 19 19 C 1.50695 * 109.46895 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00521 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99382 * 180.02562 * 19 18 17 22 22 N 1.31524 * 119.99531 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00656 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47192 * 89.99965 * 23 21 19 25 25 H 1.48498 * 109.47766 * 210.00278 * 23 21 19 26 26 H 1.48500 * 109.46883 * 330.00470 * 23 21 19 27 27 C 1.46860 * 111.32304 * 62.29929 * 16 15 14 28 28 C 1.52309 * 110.28002 * 206.47691 * 12 11 10 29 29 H 1.08997 * 109.47398 * 270.15700 * 1 2 3 30 30 H 1.08994 * 109.47507 * 30.16235 * 1 2 3 31 31 H 1.09007 * 109.47012 * 150.16297 * 1 2 3 32 32 H 1.07996 * 125.76743 * 179.71997 * 4 3 2 33 33 H 1.09000 * 110.35191 * 274.85810 * 10 9 7 34 34 H 1.09005 * 110.35211 * 37.14102 * 10 9 7 35 35 H 1.09000 * 111.23705 * 278.55733 * 11 10 9 36 36 H 1.09007 * 110.89854 * 154.60281 * 11 10 9 37 37 H 1.09003 * 109.90717 * 300.90087 * 13 9 7 38 38 H 1.09000 * 109.91294 * 61.98124 * 13 9 7 39 39 H 1.08996 * 109.49192 * 298.26822 * 14 12 11 40 40 H 1.08997 * 109.48906 * 58.34991 * 14 12 11 41 41 H 1.09009 * 109.47427 * 182.06554 * 15 14 12 42 42 H 1.08992 * 109.48046 * 62.03894 * 15 14 12 43 43 H 1.08997 * 109.46620 * 165.62534 * 17 16 15 44 44 H 1.09004 * 109.46953 * 285.62215 * 17 16 15 45 45 H 1.08999 * 109.46872 * 300.00067 * 18 17 16 46 46 H 1.09004 * 109.46749 * 59.99560 * 18 17 16 47 47 H 0.97002 * 119.99484 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.47536 * 177.70983 * 27 16 15 49 49 H 1.09000 * 109.47685 * 57.68916 * 27 16 15 50 50 H 1.08998 * 109.49067 * 301.64454 * 28 12 11 51 51 H 1.09003 * 109.49150 * 61.72434 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0431 0.0000 4 6 3.4740 0.6615 -0.0065 5 7 3.5094 -0.6676 -0.0047 6 6 2.2587 -1.0944 0.0035 7 6 1.8119 -2.5030 0.0088 8 8 0.6247 -2.7639 0.0159 9 7 2.7207 -3.4982 0.0003 10 6 4.1851 -3.3253 -0.0210 11 6 4.7480 -4.6372 0.5900 12 6 3.7593 -5.6838 0.0306 13 6 2.4162 -4.9383 0.0037 14 6 4.1716 -6.1010 -1.3751 15 6 3.2026 -7.1687 -1.8924 16 7 3.2048 -8.3159 -0.9754 17 6 2.4057 -9.4236 -1.5162 18 6 2.7536 -9.6306 -2.9917 19 6 1.9334 -10.7665 -3.5465 20 1 1.2337 -11.2884 -2.9106 21 6 2.0763 -11.1396 -4.8662 22 7 1.3609 -12.1313 -5.3503 23 14 3.2860 -10.2366 -5.9664 24 1 4.6123 -10.9006 -5.8937 25 1 2.7956 -10.2628 -7.3678 26 1 3.4121 -8.8283 -5.5123 27 6 2.7347 -7.9316 0.3618 28 6 3.6875 -6.8904 0.9573 29 1 -0.3634 0.0028 1.0276 30 1 -0.3634 0.8885 -0.5163 31 1 -0.3633 -0.8915 -0.5113 32 1 4.3332 1.3158 -0.0124 33 1 4.5371 -3.1992 -1.0449 34 1 4.4747 -2.4691 0.5884 35 1 4.7151 -4.6113 1.6792 36 1 5.7610 -4.8279 0.2356 37 1 1.8330 -5.1923 0.8889 38 1 1.8596 -5.2022 -0.8956 39 1 4.1431 -5.2338 -2.0349 40 1 5.1825 -6.5079 -1.3519 41 1 3.5171 -7.4953 -2.8837 42 1 2.1976 -6.7507 -1.9491 43 1 2.6248 -10.3349 -0.9599 44 1 1.3459 -9.1866 -1.4225 45 1 2.5345 -8.7191 -3.5479 46 1 3.8134 -9.8674 -3.0853 47 1 1.4617 -12.3940 -6.2786 48 1 2.7097 -8.8113 1.0049 49 1 1.7334 -7.5073 0.2870 50 1 4.6809 -7.3260 1.0649 51 1 3.3195 -6.5772 1.9343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277943277.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:04 Heat of formation + Delta-G solvation = 51.884317 kcal Electronic energy + Delta-G solvation = -31326.161337 eV Core-core repulsion = 27261.857181 eV Total energy + Delta-G solvation = -4064.304156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.56190 -41.76513 -40.12217 -38.26183 -35.90900 -35.36347 -34.38685 -32.99571 -32.24811 -31.68824 -30.49544 -28.99568 -28.16038 -26.46647 -25.04605 -24.51325 -24.06584 -23.28560 -22.53300 -21.45850 -20.97004 -19.49063 -19.07852 -18.50845 -18.06987 -17.98094 -17.06865 -16.70460 -16.63878 -16.32386 -15.99713 -15.65329 -15.58285 -15.29075 -15.00256 -14.78030 -14.52889 -14.44881 -14.26155 -14.20250 -13.82859 -13.75943 -13.42048 -13.29473 -13.13354 -12.99572 -12.88085 -12.64456 -12.48979 -12.11110 -12.02239 -11.80789 -11.71192 -11.59455 -11.49461 -11.47763 -11.46132 -11.37332 -11.02456 -10.90865 -10.74936 -10.70171 -9.84784 -9.15950 -8.31037 -6.35368 -0.10376 0.96190 1.35404 1.35495 1.36902 1.48619 1.82836 1.96434 2.35039 2.79637 3.03570 3.04797 3.34762 3.48792 3.56524 3.67959 3.72641 4.05203 4.18226 4.19364 4.24090 4.24907 4.26512 4.39277 4.42226 4.50998 4.55106 4.58208 4.63712 4.68915 4.71137 4.80894 4.91676 4.96447 5.00413 5.05975 5.07830 5.09728 5.15946 5.22255 5.22907 5.26186 5.29201 5.35601 5.36943 5.41642 5.50193 5.62011 6.13023 6.16093 6.27779 6.34805 6.61626 6.72657 6.98678 7.29150 8.85776 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015385 B = 0.002352 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.499547 B =11900.221963 C =12423.131119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.264 5.264 3 N -0.317 5.317 4 C 0.161 3.839 5 N -0.475 5.475 6 C 0.151 3.849 7 C 0.611 3.389 8 O -0.561 6.561 9 N -0.586 5.586 10 C 0.098 3.902 11 C -0.111 4.111 12 C -0.062 4.062 13 C 0.118 3.882 14 C -0.092 4.092 15 C 0.044 3.956 16 N -0.538 5.538 17 C 0.081 3.919 18 C -0.005 4.005 19 C -0.534 4.534 20 H 0.030 0.970 21 C 0.005 3.995 22 N -0.951 5.951 23 Si 0.952 3.048 24 H -0.264 1.264 25 H -0.285 1.285 26 H -0.247 1.247 27 C 0.048 3.952 28 C -0.088 4.088 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.260 0.740 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.011 0.989 45 H 0.021 0.979 46 H 0.024 0.976 47 H 0.267 0.733 48 H 0.077 0.923 49 H 0.022 0.978 50 H 0.089 0.911 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.415 28.301 15.854 33.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.059 5.059 3 N -0.155 5.155 4 C -0.137 4.137 5 N -0.203 5.203 6 C -0.124 4.124 7 C 0.395 3.605 8 O -0.439 6.439 9 N -0.318 5.318 10 C -0.023 4.023 11 C -0.149 4.149 12 C -0.063 4.063 13 C -0.003 4.003 14 C -0.130 4.130 15 C -0.084 4.084 16 N -0.262 5.262 17 C -0.047 4.047 18 C -0.042 4.042 19 C -0.572 4.572 20 H 0.049 0.951 21 C -0.192 4.192 22 N -0.592 5.592 23 Si 0.775 3.225 24 H -0.189 1.189 25 H -0.211 1.211 26 H -0.170 1.170 27 C -0.080 4.080 28 C -0.126 4.126 29 H 0.123 0.877 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.276 0.724 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.030 0.970 45 H 0.040 0.960 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.040 0.960 50 H 0.107 0.893 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.211 28.381 15.765 33.488 hybrid contribution -1.426 -0.238 -1.077 1.803 sum 6.785 28.143 14.688 32.462 Atomic orbital electron populations 1.22692 0.70163 1.07059 1.06478 1.47310 1.10359 1.02319 1.45928 1.74239 1.04995 1.13743 1.22498 1.26795 0.94868 0.90547 1.01503 1.71295 1.17679 1.11973 1.19397 1.23914 0.87628 0.91812 1.09039 1.16180 0.84651 0.81799 0.77833 1.90807 1.16500 1.83626 1.52927 1.48265 1.08601 1.05655 1.69241 1.22887 0.76478 1.00301 1.02649 1.22915 0.99408 0.91030 1.01541 1.21071 0.93333 0.95376 0.96501 1.22182 0.98411 0.77988 1.01768 1.21476 0.99825 0.96902 0.94767 1.22285 0.97929 0.91226 0.96935 1.62039 1.53717 1.07469 1.03015 1.21815 0.93481 0.93506 0.95857 1.19577 0.96242 0.95164 0.93235 1.21426 1.22872 1.16678 0.96232 0.95136 1.26011 0.97800 0.95639 0.99759 1.70075 1.43069 1.30190 1.15820 0.85625 0.79091 0.80460 0.77277 1.18879 1.21074 1.17028 1.22246 0.96430 0.99299 0.90000 1.21457 1.00973 0.92717 0.97435 0.87703 0.86207 0.87669 0.72420 0.90633 0.87607 0.89008 0.87204 0.90986 0.92767 0.90979 0.89343 0.91419 0.96440 0.91831 0.97038 0.96044 0.95800 0.92460 0.90426 0.96019 0.89251 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.85 127.77 1.39 2.38 16 2 N -0.26 -5.00 3.74 -361.53 -1.35 -6.35 16 3 N -0.32 -5.72 12.07 -61.30 -0.74 -6.46 16 4 C 0.16 2.40 13.03 180.79 2.36 4.76 16 5 N -0.48 -8.76 8.50 -193.33 -1.64 -10.40 16 6 C 0.15 3.20 7.67 136.70 1.05 4.25 16 7 C 0.61 14.63 7.86 86.77 0.68 15.31 16 8 O -0.56 -15.95 15.01 -3.91 -0.06 -16.01 16 9 N -0.59 -12.12 3.33 -815.28 -2.72 -14.84 16 10 C 0.10 1.47 5.87 86.98 0.51 1.98 16 11 C -0.11 -1.30 6.01 31.88 0.19 -1.10 16 12 C -0.06 -1.07 0.53 -51.92 -0.03 -1.09 16 13 C 0.12 2.53 5.10 86.46 0.44 2.97 16 14 C -0.09 -1.92 4.71 30.43 0.14 -1.77 16 15 C 0.04 1.32 4.70 86.37 0.41 1.73 16 16 N -0.54 -17.05 4.79 -895.69 -4.29 -21.33 16 17 C 0.08 3.28 5.21 86.30 0.45 3.73 16 18 C 0.00 -0.22 3.29 29.85 0.10 -0.12 16 19 C -0.53 -31.35 9.66 25.60 0.25 -31.10 16 20 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 21 C 0.00 0.28 5.47 84.65 0.46 0.74 16 22 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 23 Si 0.95 44.76 27.47 68.60 1.88 46.64 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 27 C 0.05 1.20 5.27 86.37 0.46 1.65 16 28 C -0.09 -1.52 4.73 30.43 0.14 -1.37 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.66 6.33 -2.38 -0.02 1.65 16 32 H 0.26 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.08 1.14 7.83 -2.39 -0.02 1.12 16 34 H 0.11 1.56 6.18 -2.38 -0.01 1.54 16 35 H 0.09 0.89 8.02 -2.39 -0.02 0.87 16 36 H 0.11 0.93 8.01 -2.38 -0.02 0.91 16 37 H 0.07 1.57 7.72 -2.39 -0.02 1.55 16 38 H 0.05 1.42 6.27 -2.39 -0.01 1.41 16 39 H 0.07 1.42 7.60 -2.39 -0.02 1.40 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.31 5.78 -2.38 -0.01 2.30 16 42 H 0.02 0.56 6.60 -2.39 -0.02 0.55 16 43 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.01 0.49 8.08 -2.39 -0.02 0.47 16 45 H 0.02 1.01 5.25 -2.39 -0.01 0.99 16 46 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 47 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 48 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 49 H 0.02 0.58 7.58 -2.39 -0.02 0.56 16 50 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.09 1.20 8.03 -2.39 -0.02 1.18 16 Total: -1.00 -75.29 389.61 1.25 -74.03 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.88 Total: 11.94 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 9.00 Total: 2.93 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -10.44 Total: -119.53 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.06 Total: -16.01 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Total: -75.29 1.25 -74.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277943277.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.918 kcal (2) G-P(sol) polarization free energy of solvation -75.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds