Wall clock time and date at job start Wed Apr 1 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28858 * 125.95326 * 2 1 4 4 C 1.30933 * 109.00298 * 179.97438 * 3 2 1 5 5 N 1.32949 * 108.47252 * 359.75966 * 4 3 2 6 6 C 1.32146 * 107.31957 * 0.39463 * 5 4 3 7 7 C 1.47776 * 126.44445 * 179.88468 * 6 5 4 8 8 O 1.21557 * 119.99665 * 179.68404 * 7 6 5 9 9 N 1.34773 * 120.00051 * 359.67346 * 7 6 5 10 10 C 1.46501 * 119.99799 * 180.02562 * 9 7 6 11 11 C 1.53143 * 109.42619 * 205.00251 * 10 9 7 12 12 C 1.53710 * 108.88397 * 185.95746 * 11 10 9 13 13 H 1.09006 * 112.61259 * 188.04309 * 12 11 10 14 14 C 1.54600 * 107.81308 * 312.37762 * 12 11 10 15 15 C 1.54285 * 104.84086 * 88.55976 * 14 12 11 16 16 C 1.54603 * 104.84295 * 0.02562 * 15 14 12 17 17 H 1.08997 * 112.21911 * 146.85781 * 16 15 14 18 18 C 1.53130 * 109.38544 * 84.76860 * 10 9 7 19 19 N 1.48713 * 104.22369 * 25.17751 * 16 15 14 20 20 C 1.46901 * 111.00655 * 77.51288 * 19 16 15 21 21 C 1.52992 * 109.47859 * 170.00178 * 20 19 16 22 22 C 1.52997 * 109.47482 * 179.97438 * 21 20 19 23 23 C 1.50701 * 109.47212 * 179.97438 * 22 21 20 24 24 H 1.07998 * 120.00129 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99861 * 179.97438 * 23 22 21 26 26 N 1.31510 * 119.99913 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99734 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47294 * 60.00559 * 27 25 23 29 29 H 1.48503 * 109.46954 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47431 * 300.00157 * 27 25 23 31 31 H 1.08997 * 109.47110 * 270.01850 * 1 2 3 32 32 H 1.08997 * 109.47238 * 30.02380 * 1 2 3 33 33 H 1.09008 * 109.47251 * 150.02199 * 1 2 3 34 34 H 1.08009 * 125.76056 * 180.02562 * 4 3 2 35 35 H 0.96999 * 119.99959 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.42751 * 324.89194 * 10 9 7 37 37 H 1.09001 * 109.56659 * 66.13475 * 11 10 9 38 38 H 1.08999 * 109.57034 * 305.77916 * 11 10 9 39 39 H 1.09006 * 110.36293 * 329.72835 * 14 12 11 40 40 H 1.08995 * 110.45924 * 207.45154 * 14 12 11 41 41 H 1.08996 * 110.36921 * 241.15250 * 15 14 12 42 42 H 1.09005 * 110.45317 * 118.88885 * 15 14 12 43 43 H 1.09001 * 109.57400 * 54.24381 * 18 10 9 44 44 H 1.08999 * 109.57037 * 293.88260 * 18 10 9 45 45 H 1.09002 * 109.46980 * 49.99837 * 20 19 16 46 46 H 1.09001 * 109.46628 * 290.00259 * 20 19 16 47 47 H 1.09002 * 109.47103 * 59.99734 * 21 20 19 48 48 H 1.08998 * 109.46862 * 300.00546 * 21 20 19 49 49 H 1.09002 * 109.47153 * 59.99783 * 22 21 20 50 50 H 1.09001 * 109.46832 * 299.99974 * 22 21 20 51 51 H 0.97002 * 119.99768 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2215 1.0431 0.0000 4 6 3.4740 0.6614 0.0006 5 7 3.5093 -0.6676 0.0062 6 6 2.2587 -1.0944 0.0004 7 6 1.8118 -2.5030 0.0011 8 8 0.6246 -2.7639 0.0011 9 7 2.7206 -3.4983 0.0015 10 6 2.2775 -4.8947 0.0016 11 6 3.3709 -5.7759 0.6125 12 6 2.9588 -7.2500 0.4708 13 1 3.6248 -7.9249 1.0084 14 6 1.4919 -7.3783 0.9417 15 6 0.6466 -7.1095 -0.3207 16 6 1.6796 -6.8438 -1.4398 17 1 1.3348 -7.1975 -2.4114 18 6 1.9986 -5.3396 -1.4369 19 7 2.9034 -7.5552 -0.9839 20 6 2.7886 -9.0014 -1.2149 21 6 4.1446 -9.6662 -0.9703 22 6 4.0249 -11.1725 -1.2102 23 6 5.3608 -11.8273 -0.9698 24 1 6.2102 -11.2290 -0.6749 25 6 5.4984 -13.1904 -1.1253 26 7 4.4639 -13.9190 -1.4839 27 14 7.1541 -14.0020 -0.8266 28 1 7.5804 -13.7560 0.5745 29 1 7.0378 -15.4640 -1.0597 30 1 8.1604 -13.4313 -1.7578 31 1 -0.3633 0.0003 1.0276 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 4.3333 1.3157 0.0011 35 1 3.6679 -3.2900 0.0017 36 1 1.3662 -4.9858 0.5925 37 1 3.4908 -5.5302 1.6676 38 1 4.3112 -5.6076 0.0875 39 1 1.2737 -6.6359 1.7094 40 1 1.2998 -8.3822 1.3202 41 1 0.0126 -6.2352 -0.1736 42 1 0.0389 -7.9809 -0.5649 43 1 2.8772 -5.1516 -2.0540 44 1 1.1474 -4.7851 -1.8320 45 1 2.4760 -9.1814 -2.2435 46 1 2.0498 -9.4208 -0.5320 47 1 4.4572 -9.4863 0.0584 48 1 4.8834 -9.2467 -1.6531 49 1 3.7121 -11.3529 -2.2387 50 1 3.2862 -11.5916 -0.5270 51 1 4.5608 -14.8779 -1.5936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277948545.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:39 Heat of formation + Delta-G solvation = 56.428613 kcal Electronic energy + Delta-G solvation = -30704.457557 eV Core-core repulsion = 26640.350456 eV Total energy + Delta-G solvation = -4064.107101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.87417 -41.15998 -39.56678 -35.92176 -34.91459 -34.13773 -32.65145 -32.14955 -31.40014 -30.49754 -29.92158 -28.12704 -26.38255 -24.93053 -24.35741 -23.44789 -22.68335 -21.75343 -20.98846 -20.66273 -19.60495 -19.19281 -18.14822 -17.28119 -17.19732 -16.89195 -16.32841 -15.89649 -15.40057 -15.09536 -14.79926 -14.56044 -14.41435 -14.01032 -13.97610 -13.70537 -13.51950 -13.46867 -13.16637 -12.96361 -12.59050 -12.49322 -12.27687 -11.95973 -11.75191 -11.52038 -11.27294 -11.01564 -10.91587 -10.90358 -10.81717 -10.78317 -10.62682 -10.57689 -10.48718 -10.39012 -10.32415 -10.01513 -9.59721 -9.40278 -9.28339 -9.03944 -8.32001 -8.28345 -5.97462 -3.99358 0.65712 1.67481 2.03229 2.65720 2.75929 3.34989 3.39177 3.41856 3.64359 3.99556 4.01177 4.35555 4.47966 4.54729 4.60820 4.62214 4.74110 4.85214 4.97188 5.02306 5.03293 5.06181 5.15544 5.30674 5.38246 5.40811 5.52813 5.61320 5.77958 5.79958 5.81454 5.83011 5.86696 5.90236 5.92784 5.95359 5.96962 6.06871 6.13370 6.24719 6.26087 6.36261 6.70004 6.80132 6.97339 7.05279 7.23152 7.40009 7.54083 7.69373 7.71079 7.86336 8.03190 8.46622 9.07732 9.64417 11.13873 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.001855 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.001038 B =15089.489585 C =15815.533636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.261 5.261 3 N -0.305 5.305 4 C 0.163 3.837 5 N -0.474 5.474 6 C 0.161 3.839 7 C 0.609 3.391 8 O -0.531 6.531 9 N -0.692 5.692 10 C 0.145 3.855 11 C -0.114 4.114 12 C 0.068 3.932 13 H 0.105 0.895 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.065 3.935 17 H 0.095 0.905 18 C -0.115 4.115 19 N -0.502 5.502 20 C 0.046 3.954 21 C -0.101 4.101 22 C 0.022 3.978 23 C -0.518 4.518 24 H 0.054 0.946 25 C 0.055 3.945 26 N -0.897 5.897 27 Si 0.892 3.108 28 H -0.277 1.277 29 H -0.288 1.288 30 H -0.277 1.277 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.225 0.775 35 H 0.413 0.587 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.035 0.965 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.015 0.985 50 H 0.013 0.987 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 28.621 4.106 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.056 5.056 3 N -0.143 5.143 4 C -0.136 4.136 5 N -0.201 5.201 6 C -0.115 4.115 7 C 0.390 3.610 8 O -0.407 6.407 9 N -0.342 5.342 10 C 0.042 3.958 11 C -0.152 4.152 12 C -0.042 4.042 13 H 0.123 0.877 14 C -0.193 4.193 15 C -0.193 4.193 16 C -0.045 4.045 17 H 0.113 0.887 18 C -0.154 4.154 19 N -0.224 5.224 20 C -0.082 4.082 21 C -0.139 4.139 22 C -0.016 4.016 23 C -0.556 4.556 24 H 0.072 0.928 25 C -0.145 4.145 26 N -0.536 5.536 27 Si 0.720 3.280 28 H -0.203 1.203 29 H -0.214 1.214 30 H -0.202 1.202 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.241 0.759 35 H 0.250 0.750 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.033 0.967 50 H 0.031 0.969 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.419 28.822 3.772 30.556 hybrid contribution 0.451 -0.758 0.580 1.056 sum -8.969 28.064 4.351 29.782 Atomic orbital electron populations 1.22526 0.71397 1.06615 1.05506 1.47072 1.09478 1.02620 1.46457 1.74236 1.04361 1.13703 1.21981 1.25974 0.94223 0.90479 1.02972 1.71212 1.18294 1.11567 1.19033 1.24234 0.86930 0.92404 1.07920 1.16388 0.85800 0.81538 0.77267 1.90809 1.15724 1.83289 1.50841 1.45882 1.10316 1.05765 1.72268 1.21381 0.98996 0.77722 0.97740 1.21967 0.98540 0.94031 1.00712 1.22996 0.95818 0.95346 0.90041 0.87715 1.22986 0.96085 1.02239 0.97974 1.22993 0.98795 1.01953 0.95513 1.23016 0.89404 0.93675 0.98402 0.88666 1.22068 1.02292 0.95081 0.95986 1.65489 1.34584 1.10145 1.12164 1.22382 0.99423 0.85704 1.00666 1.21587 0.94003 0.98119 1.00183 1.19067 0.96944 0.88644 0.96904 1.21217 0.95997 0.92360 1.46066 0.92751 1.25029 0.96534 0.97573 0.95400 1.69955 1.29718 1.06064 1.47866 0.86668 0.84447 0.78202 0.78729 1.20287 1.21353 1.20239 0.88949 0.88316 0.86456 0.75903 0.75042 0.88634 0.91046 0.89987 0.91218 0.91229 0.90942 0.91550 0.90528 0.91412 0.91396 0.94711 0.93670 0.92709 0.96697 0.96900 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.86 59.85 0.65 1.11 16 2 N -0.26 -2.36 3.74 -65.62 -0.25 -2.60 16 3 N -0.30 -2.85 12.07 29.28 0.35 -2.50 16 4 C 0.16 1.36 13.03 -91.89 -1.20 0.17 16 5 N -0.47 -4.67 11.09 -12.46 -0.14 -4.81 16 6 C 0.16 1.61 7.83 -155.26 -1.22 0.39 16 7 C 0.61 6.17 7.79 -12.36 -0.10 6.07 16 8 O -0.53 -6.11 14.34 5.32 0.08 -6.03 16 9 N -0.69 -6.23 5.07 -54.64 -0.28 -6.51 16 10 C 0.14 1.39 2.09 -67.79 -0.14 1.25 16 11 C -0.11 -1.11 5.09 -26.29 -0.13 -1.25 16 12 C 0.07 0.81 3.54 -65.48 -0.23 0.58 16 13 H 0.10 1.39 6.79 -51.93 -0.35 1.04 16 14 C -0.15 -1.71 5.25 -25.22 -0.13 -1.84 16 15 C -0.15 -1.68 5.45 -25.22 -0.14 -1.82 16 16 C 0.06 0.76 3.68 -65.46 -0.24 0.51 16 17 H 0.10 1.12 7.98 -51.93 -0.41 0.70 16 18 C -0.12 -1.20 5.19 -26.26 -0.14 -1.34 16 19 N -0.50 -6.90 4.96 -212.91 -1.06 -7.96 16 20 C 0.05 0.76 4.65 -3.83 -0.02 0.74 16 21 C -0.10 -2.05 5.28 -26.74 -0.14 -2.19 16 22 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 23 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 24 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 25 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 26 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 27 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.12 0.72 6.32 -51.92 -0.33 0.39 16 34 H 0.22 0.99 8.06 -52.48 -0.42 0.56 16 35 H 0.41 3.33 8.33 -40.82 -0.34 2.99 16 36 H 0.10 1.00 4.95 -51.93 -0.26 0.74 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.69 7.03 -51.93 -0.37 0.32 16 40 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 41 H 0.07 0.75 7.03 -51.93 -0.37 0.38 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.15 7.97 -51.93 -0.41 0.74 16 46 H 0.03 0.58 6.89 -51.93 -0.36 0.23 16 47 H 0.04 0.90 6.86 -51.93 -0.36 0.54 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 398.26 15.07 6.00 6.00 Total: -1.00 -32.78 398.26 -11.44 -44.22 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.15 Total: 0.44 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -3.72 Total: -10.70 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.63 Total: -50.65 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: 0.08 Total: -6.03 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.78 -11.44 -44.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277948545.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.654 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds