Wall clock time and date at job start Wed Apr 1 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28858 * 125.95326 * 2 1 4 4 C 1.30933 * 109.00298 * 179.97438 * 3 2 1 5 5 N 1.32949 * 108.47252 * 359.75966 * 4 3 2 6 6 C 1.32146 * 107.31957 * 0.39463 * 5 4 3 7 7 C 1.47776 * 126.44445 * 179.88468 * 6 5 4 8 8 O 1.21557 * 119.99665 * 179.68404 * 7 6 5 9 9 N 1.34773 * 120.00051 * 359.67346 * 7 6 5 10 10 C 1.46501 * 119.99799 * 180.02562 * 9 7 6 11 11 C 1.53143 * 109.42619 * 205.00251 * 10 9 7 12 12 C 1.53710 * 108.88397 * 185.95746 * 11 10 9 13 13 H 1.09006 * 112.61259 * 188.04309 * 12 11 10 14 14 C 1.54600 * 107.81308 * 312.37762 * 12 11 10 15 15 C 1.54285 * 104.84086 * 88.55976 * 14 12 11 16 16 C 1.54603 * 104.84295 * 0.02562 * 15 14 12 17 17 H 1.08997 * 112.21911 * 146.85781 * 16 15 14 18 18 C 1.53130 * 109.38544 * 84.76860 * 10 9 7 19 19 N 1.48713 * 104.22369 * 25.17751 * 16 15 14 20 20 C 1.46901 * 111.00655 * 77.51288 * 19 16 15 21 21 C 1.52992 * 109.47859 * 170.00178 * 20 19 16 22 22 C 1.52997 * 109.47482 * 179.97438 * 21 20 19 23 23 C 1.50701 * 109.47212 * 179.97438 * 22 21 20 24 24 H 1.07998 * 120.00129 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99861 * 179.97438 * 23 22 21 26 26 N 1.31510 * 119.99913 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99734 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47294 * 60.00559 * 27 25 23 29 29 H 1.48503 * 109.46954 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47431 * 300.00157 * 27 25 23 31 31 H 1.08997 * 109.47110 * 270.01850 * 1 2 3 32 32 H 1.08997 * 109.47238 * 30.02380 * 1 2 3 33 33 H 1.09008 * 109.47251 * 150.02199 * 1 2 3 34 34 H 1.08009 * 125.76056 * 180.02562 * 4 3 2 35 35 H 0.96999 * 119.99959 * 0.02562 * 9 7 6 36 36 H 1.08996 * 109.42751 * 324.89194 * 10 9 7 37 37 H 1.09001 * 109.56659 * 66.13475 * 11 10 9 38 38 H 1.08999 * 109.57034 * 305.77916 * 11 10 9 39 39 H 1.09006 * 110.36293 * 329.72835 * 14 12 11 40 40 H 1.08995 * 110.45924 * 207.45154 * 14 12 11 41 41 H 1.08996 * 110.36921 * 241.15250 * 15 14 12 42 42 H 1.09005 * 110.45317 * 118.88885 * 15 14 12 43 43 H 1.09001 * 109.57400 * 54.24381 * 18 10 9 44 44 H 1.08999 * 109.57037 * 293.88260 * 18 10 9 45 45 H 1.09002 * 109.46980 * 49.99837 * 20 19 16 46 46 H 1.09001 * 109.46628 * 290.00259 * 20 19 16 47 47 H 1.09002 * 109.47103 * 59.99734 * 21 20 19 48 48 H 1.08998 * 109.46862 * 300.00546 * 21 20 19 49 49 H 1.09002 * 109.47153 * 59.99783 * 22 21 20 50 50 H 1.09001 * 109.46832 * 299.99974 * 22 21 20 51 51 H 0.97002 * 119.99768 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2215 1.0431 0.0000 4 6 3.4740 0.6614 0.0006 5 7 3.5093 -0.6676 0.0062 6 6 2.2587 -1.0944 0.0004 7 6 1.8118 -2.5030 0.0011 8 8 0.6246 -2.7639 0.0011 9 7 2.7206 -3.4983 0.0015 10 6 2.2775 -4.8947 0.0016 11 6 3.3709 -5.7759 0.6125 12 6 2.9588 -7.2500 0.4708 13 1 3.6248 -7.9249 1.0084 14 6 1.4919 -7.3783 0.9417 15 6 0.6466 -7.1095 -0.3207 16 6 1.6796 -6.8438 -1.4398 17 1 1.3348 -7.1975 -2.4114 18 6 1.9986 -5.3396 -1.4369 19 7 2.9034 -7.5552 -0.9839 20 6 2.7886 -9.0014 -1.2149 21 6 4.1446 -9.6662 -0.9703 22 6 4.0249 -11.1725 -1.2102 23 6 5.3608 -11.8273 -0.9698 24 1 6.2102 -11.2290 -0.6749 25 6 5.4984 -13.1904 -1.1253 26 7 4.4639 -13.9190 -1.4839 27 14 7.1541 -14.0020 -0.8266 28 1 7.5804 -13.7560 0.5745 29 1 7.0378 -15.4640 -1.0597 30 1 8.1604 -13.4313 -1.7578 31 1 -0.3633 0.0003 1.0276 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 4.3333 1.3157 0.0011 35 1 3.6679 -3.2900 0.0017 36 1 1.3662 -4.9858 0.5925 37 1 3.4908 -5.5302 1.6676 38 1 4.3112 -5.6076 0.0875 39 1 1.2737 -6.6359 1.7094 40 1 1.2998 -8.3822 1.3202 41 1 0.0126 -6.2352 -0.1736 42 1 0.0389 -7.9809 -0.5649 43 1 2.8772 -5.1516 -2.0540 44 1 1.1474 -4.7851 -1.8320 45 1 2.4760 -9.1814 -2.2435 46 1 2.0498 -9.4208 -0.5320 47 1 4.4572 -9.4863 0.0584 48 1 4.8834 -9.2467 -1.6531 49 1 3.7121 -11.3529 -2.2387 50 1 3.2862 -11.5916 -0.5270 51 1 4.5608 -14.8779 -1.5936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277948545.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:38 Heat of formation + Delta-G solvation = 35.906120 kcal Electronic energy + Delta-G solvation = -30705.347479 eV Core-core repulsion = 26640.350456 eV Total energy + Delta-G solvation = -4064.997023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.52082 -42.08671 -40.40411 -36.91608 -35.98828 -35.37115 -34.17407 -33.09289 -32.31097 -31.65070 -31.10960 -28.69787 -28.03561 -25.93391 -25.23180 -24.67016 -23.61888 -22.85975 -21.99713 -21.68251 -20.91825 -20.04397 -18.94513 -18.48339 -17.98813 -17.89045 -17.58156 -17.01851 -16.45134 -16.20117 -16.04769 -15.68005 -15.37221 -15.08380 -14.82404 -14.78972 -14.36287 -14.18327 -14.05225 -14.00808 -13.97874 -13.59119 -13.49516 -13.14494 -13.11889 -12.70796 -12.67081 -12.54546 -12.41066 -12.20258 -11.89410 -11.73166 -11.60381 -11.56509 -11.46967 -11.39070 -11.31234 -11.28834 -11.25960 -10.94382 -10.67203 -10.52489 -10.16757 -9.42114 -8.18146 -6.28842 -0.04868 1.06377 1.37864 1.40909 1.44027 1.51850 1.97729 2.03698 2.42267 2.94070 2.97534 3.14810 3.43132 3.61752 3.67708 3.82050 3.93708 4.06461 4.12823 4.16921 4.24134 4.28519 4.29824 4.31747 4.40614 4.45579 4.52263 4.62296 4.70596 4.72748 4.82141 4.95351 5.00126 5.01558 5.05361 5.08877 5.15505 5.17066 5.19200 5.24350 5.27265 5.30259 5.31770 5.33164 5.42101 5.55217 5.77631 5.88830 6.01752 6.14231 6.24769 6.30904 6.82867 6.88030 7.01766 7.40089 8.93363 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.001855 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.001038 B =15089.489585 C =15815.533636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.262 5.262 3 N -0.318 5.318 4 C 0.160 3.840 5 N -0.487 5.487 6 C 0.146 3.854 7 C 0.610 3.390 8 O -0.547 6.547 9 N -0.684 5.684 10 C 0.153 3.847 11 C -0.105 4.105 12 C 0.062 3.938 13 H 0.092 0.908 14 C -0.150 4.150 15 C -0.148 4.148 16 C 0.063 3.937 17 H 0.093 0.907 18 C -0.107 4.107 19 N -0.508 5.508 20 C 0.060 3.940 21 C -0.084 4.084 22 C 0.026 3.974 23 C -0.541 4.541 24 H 0.059 0.941 25 C -0.002 4.002 26 N -0.933 5.933 27 Si 0.964 3.036 28 H -0.266 1.266 29 H -0.283 1.283 30 H -0.267 1.267 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.256 0.744 35 H 0.419 0.581 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.030 0.970 47 H 0.049 0.951 48 H 0.049 0.951 49 H -0.011 1.011 50 H -0.011 1.011 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 30.434 4.879 31.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.057 5.057 3 N -0.156 5.156 4 C -0.139 4.139 5 N -0.215 5.215 6 C -0.130 4.130 7 C 0.392 3.608 8 O -0.424 6.424 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.144 4.144 12 C -0.047 4.047 13 H 0.110 0.890 14 C -0.189 4.189 15 C -0.187 4.187 16 C -0.046 4.046 17 H 0.112 0.888 18 C -0.146 4.146 19 N -0.230 5.230 20 C -0.068 4.068 21 C -0.122 4.122 22 C -0.012 4.012 23 C -0.579 4.579 24 H 0.077 0.923 25 C -0.200 4.200 26 N -0.574 5.574 27 Si 0.789 3.211 28 H -0.191 1.191 29 H -0.209 1.209 30 H -0.192 1.192 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.272 0.728 35 H 0.256 0.744 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.008 0.992 50 H 0.008 0.992 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.655 30.659 4.549 32.181 hybrid contribution 0.174 -1.281 0.324 1.333 sum -8.481 29.378 4.874 30.964 Atomic orbital electron populations 1.22739 0.69950 1.07296 1.06520 1.47338 1.10409 1.02275 1.45716 1.74236 1.04878 1.13995 1.22518 1.26692 0.94928 0.90414 1.01834 1.71202 1.18395 1.12382 1.19470 1.24209 0.87395 0.92506 1.08872 1.16420 0.85620 0.81789 0.76953 1.90799 1.16327 1.83569 1.51656 1.45765 1.10525 1.05282 1.71858 1.21231 0.98811 0.77995 0.97018 1.21889 0.98383 0.92192 1.01902 1.23057 0.96301 0.96636 0.88727 0.89026 1.22955 0.95367 1.02146 0.98435 1.22947 0.98570 1.02181 0.95038 1.23074 0.88733 0.94232 0.98580 0.88847 1.21980 1.02165 0.93898 0.96562 1.65448 1.35946 1.07905 1.13697 1.22054 0.96871 0.87707 1.00205 1.21315 0.96083 0.94667 1.00173 1.18969 0.95390 0.92185 0.94618 1.21667 0.97064 0.93091 1.46111 0.92274 1.25988 1.00686 0.98332 0.94951 1.70092 1.32106 1.06432 1.48729 0.85517 0.79425 0.77047 0.79159 1.19115 1.20887 1.19231 0.87745 0.86453 0.86958 0.72797 0.74368 0.88879 0.89253 0.89997 0.89419 0.92437 0.89782 0.92176 0.90944 0.91183 0.91981 0.95128 0.93254 0.93205 0.99225 0.99221 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 10.86 127.77 1.39 2.13 16 2 N -0.26 -4.37 3.74 -361.52 -1.35 -5.72 16 3 N -0.32 -5.45 12.07 -61.29 -0.74 -6.19 16 4 C 0.16 2.40 13.03 180.79 2.36 4.75 16 5 N -0.49 -8.87 11.09 -193.32 -2.14 -11.02 16 6 C 0.15 2.72 7.83 136.70 1.07 3.79 16 7 C 0.61 11.52 7.79 86.77 0.68 12.19 16 8 O -0.55 -11.84 14.34 -3.89 -0.06 -11.89 16 9 N -0.68 -11.15 5.07 -445.05 -2.26 -13.41 16 10 C 0.15 2.66 2.09 45.08 0.09 2.75 16 11 C -0.11 -1.86 5.09 30.88 0.16 -1.70 16 12 C 0.06 1.43 3.54 45.34 0.16 1.59 16 13 H 0.09 2.38 6.79 -2.38 -0.02 2.36 16 14 C -0.15 -3.16 5.25 31.57 0.17 -2.99 16 15 C -0.15 -3.08 5.45 31.58 0.17 -2.91 16 16 C 0.06 1.42 3.68 45.37 0.17 1.59 16 17 H 0.09 2.14 7.98 -2.39 -0.02 2.12 16 18 C -0.11 -2.08 5.19 30.90 0.16 -1.92 16 19 N -0.51 -13.70 4.96 -827.52 -4.11 -17.81 16 20 C 0.06 2.02 4.65 86.30 0.40 2.42 16 21 C -0.08 -3.49 5.28 30.59 0.16 -3.33 16 22 C 0.03 1.38 4.97 29.85 0.15 1.53 16 23 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 24 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 25 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 26 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 27 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 29 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 30 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 1.27 6.32 -2.38 -0.02 1.25 16 34 H 0.26 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.42 6.02 8.33 -92.71 -0.77 5.25 16 36 H 0.09 1.74 4.95 -2.39 -0.01 1.73 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.54 7.03 -2.38 -0.02 1.52 16 40 H 0.06 1.35 7.88 -2.39 -0.02 1.33 16 41 H 0.08 1.58 7.03 -2.39 -0.02 1.56 16 42 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 2.15 7.97 -2.39 -0.02 2.13 16 46 H 0.03 1.05 6.89 -2.39 -0.02 1.03 16 47 H 0.05 1.98 6.86 -2.39 -0.02 1.96 16 48 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 49 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 50 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 51 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -70.59 398.26 -0.20 -70.79 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.17 Total: 16.32 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 7.97 Total: -10.67 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -10.32 Total: -111.13 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.06 Total: -11.89 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -70.59 -0.20 -70.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277948545.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.693 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds