Wall clock time and date at job start Wed Apr 1 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28867 * 125.95123 * 2 1 4 4 C 1.30935 * 108.99831 * 180.26670 * 3 2 1 5 5 N 1.32950 * 108.47665 * 359.71998 * 4 3 2 6 6 C 1.32151 * 107.32004 * 0.02562 * 5 4 3 7 7 C 1.47765 * 126.44532 * 180.02562 * 6 5 4 8 8 O 1.21563 * 119.99812 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00196 * 359.74765 * 7 6 5 10 10 C 1.47178 * 135.99266 * 359.90143 * 9 7 6 11 11 C 1.52570 * 87.95200 * 206.67016 * 10 9 7 12 12 C 1.47174 * 135.99070 * 180.27871 * 9 7 6 13 13 C 1.52584 * 114.00492 * 88.37010 * 11 10 9 14 14 C 1.53250 * 109.01817 * 186.32190 * 13 11 10 15 15 N 1.46832 * 109.42186 * 303.39298 * 14 13 11 16 16 C 1.46899 * 111.00008 * 187.89935 * 15 14 13 17 17 C 1.52999 * 109.47032 * 45.42578 * 16 15 14 18 18 C 1.52999 * 109.47147 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47036 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00070 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00253 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99928 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46838 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47127 * 119.99697 * 23 21 19 26 26 H 1.48500 * 109.47009 * 239.99624 * 23 21 19 27 27 C 1.46842 * 111.47686 * 63.59885 * 15 14 13 28 28 C 1.52597 * 114.36477 * 220.65129 * 11 10 9 29 29 H 1.09003 * 109.47302 * 270.20511 * 1 2 3 30 30 H 1.09000 * 109.46663 * 30.20841 * 1 2 3 31 31 H 1.08999 * 109.46694 * 150.20705 * 1 2 3 32 32 H 1.08000 * 125.76048 * 179.69664 * 4 3 2 33 33 H 1.09000 * 113.49018 * 321.36011 * 10 9 7 34 34 H 1.09003 * 113.48451 * 91.87420 * 10 9 7 35 35 H 1.09003 * 113.49441 * 268.12882 * 12 9 7 36 36 H 1.09005 * 113.49435 * 38.58916 * 12 9 7 37 37 H 1.08998 * 109.54842 * 306.18519 * 13 11 10 38 38 H 1.09002 * 109.54607 * 66.46265 * 13 11 10 39 39 H 1.08995 * 109.47806 * 183.40370 * 14 13 11 40 40 H 1.09002 * 109.47279 * 63.37742 * 14 13 11 41 41 H 1.08995 * 109.47451 * 165.42504 * 16 15 14 42 42 H 1.09004 * 109.47048 * 285.42855 * 16 15 14 43 43 H 1.08996 * 109.47461 * 300.00212 * 17 16 15 44 44 H 1.09004 * 109.46978 * 60.00234 * 17 16 15 45 45 H 1.08995 * 109.47585 * 300.00079 * 18 17 16 46 46 H 1.09000 * 109.47123 * 60.00744 * 18 17 16 47 47 H 0.96998 * 120.00418 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.47322 * 176.41105 * 27 15 14 49 49 H 1.08995 * 109.48222 * 56.37707 * 27 15 14 50 50 H 1.08998 * 109.54397 * 293.70438 * 28 11 10 51 51 H 1.08996 * 109.54911 * 53.89192 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2216 1.0432 0.0000 4 6 3.4740 0.6614 -0.0058 5 7 3.5094 -0.6676 -0.0034 6 6 2.2587 -1.0944 0.0034 7 6 1.8119 -2.5029 0.0088 8 8 0.6246 -2.7639 0.0144 9 7 2.7206 -3.4982 0.0018 10 6 4.1894 -3.5906 -0.0128 11 6 4.0427 -4.9484 -0.6928 12 6 2.6792 -4.9694 -0.0013 13 6 3.9702 -4.8757 -2.2152 14 6 3.6666 -6.2724 -2.7680 15 7 4.6891 -7.2160 -2.2990 16 6 4.5413 -8.5217 -2.9557 17 6 4.3243 -8.3163 -4.4562 18 6 4.1710 -9.6762 -5.1403 19 6 3.9579 -9.4738 -6.6184 20 1 3.9346 -8.4751 -7.0289 21 6 3.7927 -10.5635 -7.4466 22 7 3.8215 -11.7797 -6.9469 23 14 3.5292 -10.3127 -9.2790 24 1 3.5386 -8.8598 -9.5860 25 1 4.6180 -10.9854 -10.0322 26 1 2.2212 -10.8935 -9.6751 27 6 4.6617 -7.3560 -0.8375 28 6 5.0144 -6.0124 -0.1903 29 1 -0.3634 0.0037 1.0277 30 1 -0.3633 0.8881 -0.5171 31 1 -0.3633 -0.8918 -0.5106 32 1 4.3332 1.3157 -0.0119 33 1 4.6657 -2.8399 -0.6435 34 1 4.6309 -3.6483 0.9821 35 1 2.7048 -5.4069 0.9967 36 1 1.8826 -5.3804 -0.6216 37 1 3.1788 -4.1868 -2.5101 38 1 4.9247 -4.5271 -2.6095 39 1 3.6728 -6.2413 -3.8574 40 1 2.6859 -6.5960 -2.4190 41 1 5.4432 -9.1127 -2.7966 42 1 3.6841 -9.0460 -2.5331 43 1 3.4224 -7.7253 -4.6154 44 1 5.1815 -7.7920 -4.8788 45 1 5.0731 -10.2668 -4.9812 46 1 3.3140 -10.2008 -4.7179 47 1 3.7056 -12.5464 -7.5297 48 1 5.3879 -8.1088 -0.5309 49 1 3.6648 -7.6617 -0.5202 50 1 6.0326 -5.7332 -0.4610 51 1 4.9350 -6.0961 0.8935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277949650.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:52 Heat of formation + Delta-G solvation = 98.584386 kcal Electronic energy + Delta-G solvation = -30500.848808 eV Core-core repulsion = 26438.569719 eV Total energy + Delta-G solvation = -4062.279089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.84413 -41.38429 -39.02574 -37.55062 -34.98608 -34.13878 -32.74568 -32.19300 -31.07988 -30.68506 -28.55853 -27.73439 -26.65562 -25.85398 -24.08552 -23.64155 -22.97533 -22.48566 -21.45238 -20.09006 -19.70454 -18.44482 -17.91463 -17.27559 -17.23072 -16.43636 -16.24886 -16.04146 -15.41843 -15.06496 -14.92177 -14.60545 -14.48233 -14.32929 -14.24363 -13.74971 -13.66828 -13.42501 -13.19666 -13.02793 -12.71934 -12.48116 -12.33392 -12.20717 -12.05651 -11.54404 -11.38321 -11.22030 -10.98064 -10.90355 -10.84154 -10.82710 -10.75501 -10.51597 -10.46979 -10.23525 -10.20376 -9.99144 -9.61771 -9.32764 -9.13226 -9.02100 -8.33886 -8.02231 -5.99071 -4.01033 0.67686 1.61257 2.05563 2.43728 2.77034 3.31643 3.39134 3.43414 3.47072 3.85964 4.00556 4.16726 4.26668 4.45010 4.47763 4.57670 4.64128 4.75378 4.79693 4.99943 5.05293 5.14408 5.19894 5.24417 5.34050 5.36910 5.43671 5.44857 5.51951 5.52993 5.73268 5.79165 5.81890 5.83432 5.86221 5.88371 5.93625 6.01188 6.04919 6.16724 6.23252 6.30495 6.70613 6.78037 7.09614 7.14745 7.39992 7.40111 7.41656 7.68986 7.72330 7.83630 8.01277 8.44416 9.06363 9.63020 11.12344 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.001956 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.163713 B =14311.891998 C =15259.947867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.262 5.262 3 N -0.304 5.304 4 C 0.161 3.839 5 N -0.469 5.469 6 C 0.167 3.833 7 C 0.633 3.367 8 O -0.533 6.533 9 N -0.617 5.617 10 C 0.117 3.883 11 C -0.093 4.093 12 C 0.116 3.884 13 C -0.087 4.087 14 C 0.050 3.950 15 N -0.539 5.539 16 C 0.057 3.943 17 C -0.113 4.113 18 C 0.021 3.979 19 C -0.517 4.517 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.896 5.896 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.285 1.285 27 C 0.056 3.944 28 C -0.094 4.094 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.224 0.776 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.016 0.984 46 H 0.013 0.987 47 H 0.259 0.741 48 H 0.076 0.924 49 H 0.031 0.969 50 H 0.081 0.919 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 22.305 20.160 30.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.057 5.057 3 N -0.142 5.142 4 C -0.138 4.138 5 N -0.196 5.196 6 C -0.108 4.108 7 C 0.419 3.581 8 O -0.409 6.409 9 N -0.350 5.350 10 C -0.006 4.006 11 C -0.094 4.094 12 C -0.005 4.005 13 C -0.125 4.125 14 C -0.078 4.078 15 N -0.264 5.264 16 C -0.070 4.070 17 C -0.150 4.150 18 C -0.016 4.016 19 C -0.556 4.556 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.073 4.073 28 C -0.133 4.133 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.241 0.759 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.032 0.968 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.049 0.951 50 H 0.100 0.900 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.507 22.773 19.992 30.341 hybrid contribution -1.116 -0.266 -0.678 1.332 sum -2.623 22.507 19.314 29.774 Atomic orbital electron populations 1.22521 0.71413 1.06652 1.05443 1.47084 1.09480 1.02582 1.46600 1.74240 1.04392 1.13593 1.21982 1.25991 0.94202 0.90589 1.03041 1.71268 1.18244 1.11268 1.18840 1.24034 0.86926 0.91946 1.07891 1.15747 0.84330 0.80706 0.77343 1.90825 1.15232 1.82989 1.51873 1.49134 1.08806 1.06828 1.70272 1.23148 0.79391 0.96705 1.01311 1.21845 0.95209 0.95483 0.96899 1.23240 0.98289 0.77913 1.01101 1.21295 1.02738 0.97234 0.91190 1.22227 0.92602 0.91393 1.01602 1.61918 1.48507 1.11204 1.04726 1.22268 1.00100 0.88480 0.96139 1.21804 1.00422 1.01140 0.91661 1.19076 0.97036 0.90736 0.94769 1.21280 1.48822 0.92586 0.92877 0.92677 1.25032 0.95516 0.95295 0.98733 1.69972 1.50628 0.97762 1.35186 0.86555 0.77707 0.78239 0.85613 1.19744 1.21011 1.21076 1.22065 0.99928 0.96798 0.88473 1.21413 0.99344 0.93490 0.99021 0.88995 0.88222 0.86540 0.75938 0.88724 0.89216 0.89082 0.89802 0.91694 0.90140 0.88976 0.95211 0.91018 0.95396 0.93178 0.92515 0.96531 0.96833 0.93103 0.90604 0.95128 0.90019 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.86 59.85 0.65 1.18 16 2 N -0.26 -2.59 3.74 -65.62 -0.25 -2.83 16 3 N -0.30 -3.02 12.08 29.27 0.35 -2.67 16 4 C 0.16 1.42 13.03 -91.88 -1.20 0.22 16 5 N -0.47 -4.88 9.94 -12.46 -0.12 -5.00 16 6 C 0.17 1.84 7.80 -155.26 -1.21 0.63 16 7 C 0.63 7.38 8.07 -12.37 -0.10 7.28 16 8 O -0.53 -7.13 15.45 5.31 0.08 -7.05 16 9 N -0.62 -6.18 3.48 -186.48 -0.65 -6.83 16 10 C 0.12 0.94 6.93 -8.33 -0.06 0.88 16 11 C -0.09 -0.79 0.85 -155.21 -0.13 -0.93 16 12 C 0.12 1.04 7.67 -8.16 -0.06 0.97 16 13 C -0.09 -0.91 5.27 -26.82 -0.14 -1.05 16 14 C 0.05 0.65 4.89 -3.73 -0.02 0.63 16 15 N -0.54 -7.35 4.76 -234.42 -1.12 -8.46 16 16 C 0.06 0.95 5.27 -3.83 -0.02 0.93 16 17 C -0.11 -2.27 4.39 -26.73 -0.12 -2.38 16 18 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 19 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 20 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 23 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.06 0.59 5.41 -3.73 -0.02 0.57 16 28 C -0.09 -0.75 5.34 -26.81 -0.14 -0.90 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.12 0.85 6.33 -51.93 -0.33 0.52 16 32 H 0.22 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.09 0.81 7.48 -51.93 -0.39 0.43 16 34 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.09 0.67 8.01 -51.93 -0.42 0.25 16 36 H 0.08 0.85 7.78 -51.93 -0.40 0.45 16 37 H 0.06 0.71 7.95 -51.93 -0.41 0.30 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.35 5.68 -51.93 -0.30 1.06 16 40 H 0.03 0.40 7.81 -51.93 -0.41 -0.01 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 43 H 0.05 0.99 6.17 -51.93 -0.32 0.67 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 48 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.07 0.42 8.02 -51.93 -0.42 0.01 16 LS Contribution 405.84 15.07 6.12 6.12 Total: -1.00 -33.74 405.84 -11.41 -45.14 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -8.42 Total: -3.85 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.12 Total: -5.04 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -1.04 Total: -52.05 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.08 Total: -7.05 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.74 -11.41 -45.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277949650.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.729 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds