Wall clock time and date at job start Wed Apr 1 2020 05:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47190 * 2 1 4 4 C 1.34774 * 120.00011 * 275.98402 * 3 2 1 5 5 O 1.21286 * 119.99662 * 185.02688 * 4 3 2 6 6 C 1.50700 * 120.00216 * 5.03262 * 4 3 2 7 7 C 1.50701 * 109.47213 * 179.97438 * 6 4 3 8 8 N 1.30830 * 125.96017 * 269.68897 * 7 6 4 9 9 C 1.33241 * 109.82844 * 179.86445 * 8 7 6 10 10 C 1.50695 * 125.52626 * 180.12791 * 9 8 7 11 11 C 1.53004 * 117.49909 * 188.91851 * 10 9 8 12 12 C 1.52994 * 59.99955 * 252.51341 * 11 10 9 13 13 N 1.30720 * 108.94379 * 0.40567 * 9 8 7 14 14 N 1.34424 * 125.96199 * 89.99733 * 7 6 4 15 15 C 1.46501 * 126.82143 * 359.94275 * 14 7 6 16 16 C 1.46502 * 119.99912 * 95.99017 * 3 2 1 17 17 H 1.09003 * 110.88707 * 190.02963 * 16 3 2 18 18 C 1.55154 * 111.00661 * 66.14434 * 16 3 2 19 19 C 1.54325 * 102.94316 * 277.42977 * 18 16 3 20 20 N 1.47015 * 107.26933 * 337.80464 * 19 18 16 21 21 C 1.36944 * 125.64906 * 178.98791 * 20 19 18 22 22 H 1.07999 * 120.00362 * 174.92227 * 21 20 19 23 23 C 1.38818 * 119.99526 * 354.91726 * 21 20 19 24 24 N 1.31617 * 120.00097 * 5.66300 * 23 21 20 25 25 Si 1.86803 * 119.99606 * 185.66345 * 23 21 20 26 26 H 1.48500 * 109.47098 * 95.00127 * 25 23 21 27 27 H 1.48501 * 109.46870 * 214.99568 * 25 23 21 28 28 H 1.48495 * 109.47326 * 334.99446 * 25 23 21 29 29 C 1.47420 * 108.70768 * 358.94434 * 20 19 18 30 30 H 1.08992 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47008 * 59.99839 * 1 2 3 32 32 H 1.08997 * 109.47043 * 300.00552 * 1 2 3 33 33 H 1.09000 * 109.46399 * 119.99994 * 2 1 3 34 34 H 1.08997 * 109.47043 * 239.99448 * 2 1 3 35 35 H 1.08996 * 109.46681 * 299.99840 * 6 4 3 36 36 H 1.09002 * 109.47125 * 59.99433 * 6 4 3 37 37 H 1.09000 * 115.55091 * 334.62524 * 10 9 8 38 38 H 1.09003 * 117.49480 * 0.02562 * 11 10 9 39 39 H 1.09002 * 117.49992 * 145.01712 * 11 10 9 40 40 H 1.09007 * 117.49507 * 252.50883 * 12 11 10 41 41 H 1.08992 * 117.50319 * 107.49440 * 12 11 10 42 42 H 1.09007 * 109.47511 * 89.99897 * 15 14 7 43 43 H 1.09003 * 109.47234 * 210.00055 * 15 14 7 44 44 H 1.08995 * 109.47368 * 330.00029 * 15 14 7 45 45 H 1.09000 * 110.72135 * 35.79611 * 18 16 3 46 46 H 1.09010 * 110.72022 * 159.06634 * 18 16 3 47 47 H 1.08996 * 109.88279 * 97.22247 * 19 18 16 48 48 H 1.09000 * 109.88177 * 218.23720 * 19 18 16 49 49 H 0.96998 * 119.99700 * 179.97438 * 24 23 21 50 50 H 1.09004 * 110.36424 * 265.28935 * 29 20 19 51 51 H 1.08995 * 110.37012 * 142.96940 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1283 2.0571 -1.1608 5 8 2.6175 3.1668 -1.1723 6 6 1.6432 1.4340 -2.4444 7 6 1.8788 2.3886 -3.5865 8 7 1.0387 3.2949 -4.0160 9 6 1.5756 3.9608 -5.0376 10 6 0.9142 5.0825 -5.7962 11 6 1.6057 5.5797 -7.0672 12 6 1.6172 6.4414 -5.8031 13 7 2.7668 3.4794 -5.2789 14 7 2.9864 2.4534 -4.3455 15 6 4.1849 1.6198 -4.2227 16 6 2.3874 2.0276 1.2618 17 1 2.5591 3.0942 1.1164 18 6 3.6292 1.3454 1.8939 19 6 3.0210 0.1312 2.6269 20 7 1.6029 0.4335 2.8698 21 6 0.7027 -0.3984 3.4806 22 1 -0.2993 -0.0521 3.6863 23 6 1.0783 -1.6868 3.8353 24 7 2.3280 -2.0723 3.6872 25 14 -0.1900 -2.8735 4.5229 26 1 -0.7289 -3.7137 3.4235 27 1 0.4481 -3.7433 5.5434 28 1 -1.2973 -2.1068 5.1484 29 6 1.3105 1.7808 2.3478 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 2.1873 0.5074 -2.6267 36 1 0.5774 1.2198 -2.3642 37 1 -0.1757 5.0797 -5.7840 38 1 2.5388 5.0952 -7.3550 39 1 0.9707 5.9040 -7.8917 40 1 0.9897 7.3327 -5.7958 41 1 2.5580 6.5242 -5.2589 42 1 4.0749 0.7314 -4.8448 43 1 5.0567 2.1866 -4.5496 44 1 4.3148 1.3211 -3.1826 45 1 4.3257 1.0202 1.1211 46 1 4.1201 2.0157 2.5996 47 1 3.1089 -0.7595 2.0049 48 1 3.5363 -0.0261 3.5744 49 1 2.5905 -2.9725 3.9354 50 1 1.3961 2.5222 3.1423 51 1 0.3140 1.8090 1.9072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318491977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:44 Heat of formation + Delta-G solvation = 123.740359 kcal Electronic energy + Delta-G solvation = -31784.265729 eV Core-core repulsion = 27723.077484 eV Total energy + Delta-G solvation = -4061.188244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.24478 -40.02566 -37.70438 -37.30581 -34.71527 -33.97982 -32.90655 -32.13935 -30.32750 -29.20614 -28.80326 -27.60903 -27.09230 -24.51775 -23.87632 -22.98555 -22.58329 -21.63218 -20.33534 -20.14704 -19.84991 -18.56547 -17.34871 -17.06460 -16.98629 -16.24755 -15.67441 -15.56982 -15.10256 -14.91779 -14.73033 -14.27238 -13.92055 -13.71300 -13.62530 -13.44376 -13.20446 -13.05956 -12.71368 -12.32755 -12.23463 -12.11087 -11.99081 -11.90856 -11.79972 -11.64631 -11.33130 -11.07803 -11.02147 -10.95980 -10.85589 -10.72660 -10.52669 -10.19993 -10.15799 -9.98964 -9.97150 -9.76624 -9.72668 -9.44153 -9.18706 -8.71687 -8.28151 -6.92645 -5.82206 -3.15129 1.47865 2.19094 2.65714 2.72322 3.25663 3.32927 3.40144 3.41167 3.69051 3.83763 4.25117 4.36321 4.41544 4.62736 4.65821 4.78439 4.82508 4.91626 4.97230 5.13837 5.22236 5.31084 5.37303 5.41857 5.42471 5.44589 5.48499 5.60255 5.63027 5.79784 5.82540 5.90773 5.92571 5.94546 6.13096 6.22457 6.24612 6.27935 6.38505 6.39407 6.46820 6.56164 6.66553 6.71329 6.87177 7.04091 7.45982 7.47795 7.70207 7.76428 8.09125 8.13277 8.33155 9.11466 9.71148 10.37060 11.29260 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.002457 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.834660 B =11392.080207 C =11525.836914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.084 3.916 3 N -0.580 5.580 4 C 0.518 3.482 5 O -0.543 6.543 6 C -0.068 4.068 7 C 0.309 3.691 8 N -0.528 5.528 9 C 0.254 3.746 10 C -0.069 4.069 11 C -0.162 4.162 12 C -0.159 4.159 13 N -0.318 5.318 14 N -0.373 5.373 15 C 0.096 3.904 16 C 0.125 3.875 17 H 0.097 0.903 18 C -0.156 4.156 19 C 0.173 3.827 20 N -0.601 5.601 21 C -0.224 4.224 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.921 5.921 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.123 3.877 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.135 0.865 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.041 0.959 49 H 0.252 0.748 50 H 0.030 0.970 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 7.192 -17.393 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.038 4.038 3 N -0.312 5.312 4 C 0.303 3.697 5 O -0.421 6.421 6 C -0.110 4.110 7 C 0.032 3.968 8 N -0.255 5.255 9 C -0.028 4.028 10 C -0.090 4.090 11 C -0.200 4.200 12 C -0.197 4.197 13 N -0.147 5.147 14 N -0.163 5.163 15 C -0.046 4.046 16 C 0.021 3.979 17 H 0.115 0.885 18 C -0.195 4.195 19 C 0.049 3.951 20 N -0.328 5.328 21 C -0.352 4.352 22 H 0.095 0.905 23 C -0.201 4.201 24 N -0.568 5.568 25 Si 0.738 3.262 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.207 1.207 29 C -0.003 4.003 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.063 0.937 50 H 0.048 0.952 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.720 7.775 -17.704 19.413 hybrid contribution -0.492 -1.119 0.722 1.420 sum 1.227 6.656 -16.982 18.281 Atomic orbital electron populations 1.22194 0.95774 1.02304 1.01735 1.22123 0.95086 0.81429 1.05113 1.47831 1.63333 1.14499 1.05493 1.19999 0.79218 0.85759 0.84697 1.90720 1.45034 1.19889 1.86456 1.20341 1.06501 0.95975 0.88181 1.23378 0.83797 0.95702 0.93922 1.70222 1.32076 1.09319 1.13851 1.23017 0.89490 0.96820 0.93432 1.20028 0.98438 0.90831 0.99666 1.23024 1.02913 1.02918 0.91106 1.23024 1.02547 0.93125 1.01050 1.77879 1.18643 1.04303 1.13862 1.50047 1.14664 1.27170 1.24431 1.21954 0.85103 0.93794 1.03788 1.22257 0.96066 0.96884 0.82688 0.88531 1.23269 0.96630 1.00059 0.99526 1.21235 0.83951 0.92215 0.97742 1.44548 1.06579 1.12954 1.68739 1.18998 0.92567 0.92101 1.31527 0.90487 1.24762 0.96407 0.97362 1.01585 1.69959 1.14734 1.18410 1.53724 0.86172 0.80492 0.81240 0.78328 1.21602 1.21873 1.20705 1.21955 0.96290 0.89106 0.92987 0.91761 0.94256 0.90743 0.84769 0.92571 0.86797 0.84929 0.85197 0.87943 0.87959 0.87778 0.88533 0.90083 0.88854 0.89063 0.91988 0.91416 0.92891 0.94101 0.93722 0.95231 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.99 37.16 0.37 -2.04 16 2 C 0.08 1.29 5.04 -4.04 -0.02 1.27 16 3 N -0.58 -9.18 2.52 -163.67 -0.41 -9.60 16 4 C 0.52 8.12 7.61 -10.99 -0.08 8.03 16 5 O -0.54 -10.45 15.47 5.55 0.09 -10.36 16 6 C -0.07 -0.84 4.49 -29.03 -0.13 -0.97 16 7 C 0.31 4.54 6.48 -155.70 -1.01 3.53 16 8 N -0.53 -8.64 11.19 -8.16 -0.09 -8.73 16 9 C 0.25 3.81 7.69 -156.85 -1.21 2.61 16 10 C -0.07 -0.78 6.33 -91.77 -0.58 -1.36 16 11 C -0.16 -1.44 10.13 -26.73 -0.27 -1.71 16 12 C -0.16 -1.52 10.23 -26.74 -0.27 -1.80 16 13 N -0.32 -4.76 12.24 32.42 0.40 -4.36 16 14 N -0.37 -5.10 4.04 -65.10 -0.26 -5.37 16 15 C 0.10 0.87 11.16 59.85 0.67 1.54 16 16 C 0.13 2.17 3.61 -65.78 -0.24 1.94 16 17 H 0.10 1.71 7.11 -51.93 -0.37 1.34 16 18 C -0.16 -2.75 6.55 -24.90 -0.16 -2.91 16 19 C 0.17 3.74 4.31 -3.07 -0.01 3.72 16 20 N -0.60 -13.41 2.19 -170.08 -0.37 -13.79 16 21 C -0.22 -5.55 10.27 -15.05 -0.15 -5.71 16 22 H 0.08 1.90 7.83 -52.49 -0.41 1.48 16 23 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 24 N -0.92 -24.60 10.35 55.49 0.57 -24.03 16 25 Si 0.91 20.61 29.56 -169.99 -5.02 15.58 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 29 C 0.12 2.36 6.08 -2.53 -0.02 2.35 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.50 6.23 -51.92 -0.32 0.17 16 32 H 0.07 1.28 5.71 -51.93 -0.30 0.99 16 33 H 0.13 2.58 3.69 -51.93 -0.19 2.39 16 34 H 0.06 0.69 6.74 -51.93 -0.35 0.34 16 35 H 0.11 1.04 6.91 -51.93 -0.36 0.68 16 36 H 0.13 1.52 6.28 -51.93 -0.33 1.19 16 37 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 0.76 7.72 -51.93 -0.40 0.36 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 47 H 0.05 1.24 5.69 -51.93 -0.30 0.94 16 48 H 0.04 1.01 7.63 -51.93 -0.40 0.62 16 49 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 50 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.05 0.96 6.06 -51.93 -0.31 0.64 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -32.09 399.56 -10.11 -42.19 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.81 Total: 4.15 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -3.21 Total: 8.27 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.17 Total: -65.86 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.09 -10.11 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318491977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.934 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds