Wall clock time and date at job start Wed Apr 1 2020 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47190 * 2 1 4 4 C 1.34774 * 120.00011 * 275.98402 * 3 2 1 5 5 O 1.21286 * 119.99662 * 185.02688 * 4 3 2 6 6 C 1.50700 * 120.00216 * 5.03262 * 4 3 2 7 7 C 1.50701 * 109.47213 * 179.97438 * 6 4 3 8 8 N 1.30830 * 125.96017 * 269.68897 * 7 6 4 9 9 C 1.33241 * 109.82844 * 179.86445 * 8 7 6 10 10 C 1.50695 * 125.52626 * 180.12791 * 9 8 7 11 11 C 1.53004 * 117.49909 * 188.91851 * 10 9 8 12 12 C 1.52994 * 59.99955 * 252.51341 * 11 10 9 13 13 N 1.30720 * 108.94379 * 0.40567 * 9 8 7 14 14 N 1.34424 * 125.96199 * 89.99733 * 7 6 4 15 15 C 1.46501 * 126.82143 * 359.94275 * 14 7 6 16 16 C 1.46502 * 119.99912 * 95.99017 * 3 2 1 17 17 H 1.09003 * 110.88707 * 190.02963 * 16 3 2 18 18 C 1.55154 * 111.00661 * 66.14434 * 16 3 2 19 19 C 1.54325 * 102.94316 * 277.42977 * 18 16 3 20 20 N 1.47015 * 107.26933 * 337.80464 * 19 18 16 21 21 C 1.36944 * 125.64906 * 178.98791 * 20 19 18 22 22 H 1.07999 * 120.00362 * 174.92227 * 21 20 19 23 23 C 1.38818 * 119.99526 * 354.91726 * 21 20 19 24 24 N 1.31617 * 120.00097 * 5.66300 * 23 21 20 25 25 Si 1.86803 * 119.99606 * 185.66345 * 23 21 20 26 26 H 1.48500 * 109.47098 * 95.00127 * 25 23 21 27 27 H 1.48501 * 109.46870 * 214.99568 * 25 23 21 28 28 H 1.48495 * 109.47326 * 334.99446 * 25 23 21 29 29 C 1.47420 * 108.70768 * 358.94434 * 20 19 18 30 30 H 1.08992 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47008 * 59.99839 * 1 2 3 32 32 H 1.08997 * 109.47043 * 300.00552 * 1 2 3 33 33 H 1.09000 * 109.46399 * 119.99994 * 2 1 3 34 34 H 1.08997 * 109.47043 * 239.99448 * 2 1 3 35 35 H 1.08996 * 109.46681 * 299.99840 * 6 4 3 36 36 H 1.09002 * 109.47125 * 59.99433 * 6 4 3 37 37 H 1.09000 * 115.55091 * 334.62524 * 10 9 8 38 38 H 1.09003 * 117.49480 * 0.02562 * 11 10 9 39 39 H 1.09002 * 117.49992 * 145.01712 * 11 10 9 40 40 H 1.09007 * 117.49507 * 252.50883 * 12 11 10 41 41 H 1.08992 * 117.50319 * 107.49440 * 12 11 10 42 42 H 1.09007 * 109.47511 * 89.99897 * 15 14 7 43 43 H 1.09003 * 109.47234 * 210.00055 * 15 14 7 44 44 H 1.08995 * 109.47368 * 330.00029 * 15 14 7 45 45 H 1.09000 * 110.72135 * 35.79611 * 18 16 3 46 46 H 1.09010 * 110.72022 * 159.06634 * 18 16 3 47 47 H 1.08996 * 109.88279 * 97.22247 * 19 18 16 48 48 H 1.09000 * 109.88177 * 218.23720 * 19 18 16 49 49 H 0.96998 * 119.99700 * 179.97438 * 24 23 21 50 50 H 1.09004 * 110.36424 * 265.28935 * 29 20 19 51 51 H 1.08995 * 110.37012 * 142.96940 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1283 2.0571 -1.1608 5 8 2.6175 3.1668 -1.1723 6 6 1.6432 1.4340 -2.4444 7 6 1.8788 2.3886 -3.5865 8 7 1.0387 3.2949 -4.0160 9 6 1.5756 3.9608 -5.0376 10 6 0.9142 5.0825 -5.7962 11 6 1.6057 5.5797 -7.0672 12 6 1.6172 6.4414 -5.8031 13 7 2.7668 3.4794 -5.2789 14 7 2.9864 2.4534 -4.3455 15 6 4.1849 1.6198 -4.2227 16 6 2.3874 2.0276 1.2618 17 1 2.5591 3.0942 1.1164 18 6 3.6292 1.3454 1.8939 19 6 3.0210 0.1312 2.6269 20 7 1.6029 0.4335 2.8698 21 6 0.7027 -0.3984 3.4806 22 1 -0.2993 -0.0521 3.6863 23 6 1.0783 -1.6868 3.8353 24 7 2.3280 -2.0723 3.6872 25 14 -0.1900 -2.8735 4.5229 26 1 -0.7289 -3.7137 3.4235 27 1 0.4481 -3.7433 5.5434 28 1 -1.2973 -2.1068 5.1484 29 6 1.3105 1.7808 2.3478 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8899 33 1 1.8932 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 2.1873 0.5074 -2.6267 36 1 0.5774 1.2198 -2.3642 37 1 -0.1757 5.0797 -5.7840 38 1 2.5388 5.0952 -7.3550 39 1 0.9707 5.9040 -7.8917 40 1 0.9897 7.3327 -5.7958 41 1 2.5580 6.5242 -5.2589 42 1 4.0749 0.7314 -4.8448 43 1 5.0567 2.1866 -4.5496 44 1 4.3148 1.3211 -3.1826 45 1 4.3257 1.0202 1.1211 46 1 4.1201 2.0157 2.5996 47 1 3.1089 -0.7595 2.0049 48 1 3.5363 -0.0261 3.5744 49 1 2.5905 -2.9725 3.9354 50 1 1.3961 2.5222 3.1423 51 1 0.3140 1.8090 1.9072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318491977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:43 Heat of formation + Delta-G solvation = 106.278602 kcal Electronic energy + Delta-G solvation = -31785.022927 eV Core-core repulsion = 27723.077484 eV Total energy + Delta-G solvation = -4061.945443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.26786 -41.36163 -39.14298 -38.15162 -36.16785 -34.91500 -34.40861 -33.44744 -31.82855 -30.53771 -30.14064 -28.92705 -28.15240 -26.32158 -24.76358 -24.20419 -23.31749 -22.89663 -21.89854 -21.43862 -20.88309 -19.83416 -18.82613 -18.55063 -18.00623 -17.48973 -16.77388 -16.63291 -16.41351 -16.29273 -15.93298 -15.60440 -15.44215 -14.95741 -14.63211 -14.51899 -14.26543 -14.14020 -13.97433 -13.73548 -13.65762 -13.39035 -13.24942 -13.11261 -12.90379 -12.80518 -12.72016 -12.60326 -12.40983 -12.25406 -12.00375 -11.97463 -11.86771 -11.79578 -11.52511 -11.48032 -11.42264 -11.05813 -10.92169 -10.67502 -10.59554 -10.17202 -9.65193 -8.78636 -7.77608 -5.10318 0.44545 1.29928 1.49749 1.51346 1.53837 1.60386 1.61737 2.07001 2.55098 2.77245 3.00223 3.34350 3.42012 3.43581 3.53711 3.71554 3.87945 3.92521 3.99641 4.04633 4.06620 4.17016 4.21752 4.31286 4.33107 4.36327 4.53393 4.56283 4.58095 4.62625 4.72132 4.74404 4.82779 4.87466 4.90194 4.98896 5.07385 5.08251 5.11359 5.23434 5.27213 5.29775 5.38233 5.55331 5.58730 5.68303 5.71918 5.76863 5.86672 6.25399 6.47982 7.04776 7.08105 7.18424 7.83345 8.48687 9.32493 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.002457 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.834660 B =11392.080207 C =11525.836914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.087 3.913 3 N -0.578 5.578 4 C 0.522 3.478 5 O -0.580 6.580 6 C -0.059 4.059 7 C 0.297 3.703 8 N -0.561 5.561 9 C 0.239 3.761 10 C -0.093 4.093 11 C -0.142 4.142 12 C -0.155 4.155 13 N -0.337 5.337 14 N -0.375 5.375 15 C 0.085 3.915 16 C 0.136 3.864 17 H 0.097 0.903 18 C -0.141 4.141 19 C 0.187 3.813 20 N -0.609 5.609 21 C -0.222 4.222 22 H 0.076 0.924 23 C -0.052 4.052 24 N -0.945 5.945 25 Si 0.962 3.038 26 H -0.285 1.285 27 H -0.303 1.303 28 H -0.276 1.276 29 C 0.124 3.876 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.036 0.964 48 H 0.001 0.999 49 H 0.245 0.755 50 H 0.030 0.970 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 7.285 -19.362 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.034 4.034 3 N -0.309 5.309 4 C 0.310 3.690 5 O -0.460 6.460 6 C -0.101 4.101 7 C 0.020 3.980 8 N -0.289 5.289 9 C -0.042 4.042 10 C -0.114 4.114 11 C -0.180 4.180 12 C -0.194 4.194 13 N -0.166 5.166 14 N -0.165 5.165 15 C -0.055 4.055 16 C 0.031 3.969 17 H 0.115 0.885 18 C -0.180 4.180 19 C 0.062 3.938 20 N -0.336 5.336 21 C -0.351 4.351 22 H 0.094 0.906 23 C -0.246 4.246 24 N -0.594 5.594 25 Si 0.792 3.208 26 H -0.211 1.211 27 H -0.230 1.230 28 H -0.201 1.201 29 C -0.002 4.002 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.109 0.891 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.054 0.946 48 H 0.019 0.981 49 H 0.055 0.945 50 H 0.048 0.952 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.158 7.869 -19.685 21.231 hybrid contribution -0.298 -1.101 1.346 1.764 sum 0.860 6.768 -18.339 19.567 Atomic orbital electron populations 1.22118 0.95384 1.02379 1.01561 1.22068 0.95348 0.80852 1.05180 1.47814 1.63251 1.14706 1.05099 1.20439 0.78159 0.85105 0.85299 1.90713 1.46723 1.21615 1.86991 1.20411 1.07674 0.96541 0.85437 1.23690 0.84053 0.95855 0.94411 1.70193 1.33504 1.10374 1.14814 1.23655 0.89634 0.97443 0.93446 1.20271 0.98999 0.90798 1.01290 1.23082 1.02406 1.01391 0.91116 1.23075 1.01821 0.93289 1.01210 1.77809 1.18938 1.05062 1.14828 1.50336 1.15419 1.26940 1.23759 1.22321 0.83809 0.94316 1.05076 1.22033 0.94896 0.96974 0.83012 0.88462 1.23131 0.96855 0.98405 0.99643 1.20964 0.83533 0.93466 0.95829 1.44647 1.06649 1.13804 1.68469 1.19204 0.92874 0.92438 1.30593 0.90577 1.25354 0.97739 0.98732 1.02737 1.70133 1.16035 1.18133 1.55082 0.85298 0.78678 0.79342 0.77434 1.21145 1.23047 1.20147 1.22019 0.97169 0.87486 0.93545 0.91558 0.91765 0.93503 0.88401 0.88801 0.82955 0.83633 0.84254 0.89079 0.85100 0.85401 0.90453 0.87237 0.88399 0.88163 0.90558 0.90511 0.94589 0.98055 0.94516 0.95185 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 9.99 71.98 0.72 -3.62 16 2 C 0.09 2.49 5.04 86.38 0.44 2.93 16 3 N -0.58 -17.20 2.52 -790.13 -1.99 -19.19 16 4 C 0.52 15.25 7.61 87.66 0.67 15.91 16 5 O -0.58 -21.58 15.47 -3.05 -0.05 -21.62 16 6 C -0.06 -1.29 4.49 29.10 0.13 -1.16 16 7 C 0.30 8.21 6.48 138.23 0.90 9.10 16 8 N -0.56 -17.89 11.19 -179.73 -2.01 -19.91 16 9 C 0.24 7.07 7.69 138.63 1.07 8.13 16 10 C -0.09 -2.03 6.33 -11.54 -0.07 -2.10 16 11 C -0.14 -2.30 10.13 30.59 0.31 -1.99 16 12 C -0.16 -2.80 10.23 30.59 0.31 -2.49 16 13 N -0.34 -9.85 12.24 -51.33 -0.63 -10.48 16 14 N -0.37 -9.64 4.04 -359.87 -1.45 -11.09 16 15 C 0.09 1.34 11.16 127.77 1.43 2.77 16 16 C 0.14 4.56 3.61 46.38 0.17 4.73 16 17 H 0.10 3.34 7.11 -2.39 -0.02 3.32 16 18 C -0.14 -4.87 6.55 31.78 0.21 -4.66 16 19 C 0.19 8.18 4.31 86.73 0.37 8.55 16 20 N -0.61 -27.35 2.19 -692.00 -1.51 -28.87 16 21 C -0.22 -11.08 10.27 84.03 0.86 -10.22 16 22 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 23 C -0.05 -2.68 5.48 84.86 0.47 -2.22 16 24 N -0.94 -51.50 10.35 21.65 0.22 -51.27 16 25 Si 0.96 42.57 29.56 68.60 2.03 44.60 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 29 C 0.12 4.69 6.08 86.86 0.53 5.22 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.44 6.23 -2.38 -0.01 1.42 16 32 H 0.05 1.56 5.71 -2.39 -0.01 1.54 16 33 H 0.10 3.68 3.69 -2.39 -0.01 3.67 16 34 H 0.09 1.97 6.74 -2.39 -0.02 1.95 16 35 H 0.15 2.09 6.91 -2.39 -0.02 2.07 16 36 H 0.15 2.83 6.28 -2.39 -0.01 2.82 16 37 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.09 1.69 7.88 -2.39 -0.02 1.68 16 39 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.10 1.40 7.72 -2.39 -0.02 1.38 16 45 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 46 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 47 H 0.04 1.71 5.69 -2.39 -0.01 1.70 16 48 H 0.00 0.06 7.63 -2.39 -0.02 0.04 16 49 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 50 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 51 H 0.05 1.99 6.06 -2.39 -0.01 1.98 16 Total: -1.00 -71.54 399.56 4.05 -67.49 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.95 Total: 21.44 kcal Atomic # 6 Polarization: 20.40 SS G_CDS: 8.49 Total: 28.90 kcal Atomic # 7 Polarization: -133.43 SS G_CDS: -7.38 Total: -140.80 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -71.54 4.05 -67.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318491977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.773 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds