Wall clock time and date at job start Wed Apr 1 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36876 * 126.39741 * 2 1 4 4 C 1.34670 * 106.81669 * 180.24881 * 3 2 1 5 5 N 1.34120 * 108.02240 * 359.74214 * 4 3 2 6 6 C 1.30507 * 109.25451 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.64975 * 180.02562 * 6 5 4 8 8 H 1.08993 * 110.91733 * 182.47634 * 7 6 5 9 9 C 1.55161 * 111.00222 * 306.37714 * 7 6 5 10 10 C 1.54332 * 103.01857 * 153.38384 * 9 7 6 11 11 N 1.47022 * 107.26762 * 338.13829 * 10 9 7 12 12 C 1.34772 * 125.65209 * 178.85198 * 11 10 9 13 13 O 1.21583 * 120.00099 * 179.68941 * 12 11 10 14 14 N 1.34782 * 119.99984 * 359.69011 * 12 11 10 15 15 C 1.46497 * 120.00192 * 179.97438 * 14 12 11 16 16 C 1.53033 * 109.46005 * 205.00161 * 15 14 12 17 17 C 1.53196 * 109.31256 * 178.63244 * 16 15 14 18 18 N 1.46922 * 108.77612 * 54.63579 * 17 16 15 19 19 C 1.36936 * 120.63625 * 126.37351 * 18 17 16 20 20 H 1.08003 * 119.99356 * 332.09108 * 19 18 17 21 21 C 1.38803 * 120.00756 * 152.09452 * 19 18 17 22 22 N 1.31618 * 119.99736 * 335.49342 * 21 19 18 23 23 Si 1.86799 * 120.00355 * 155.49660 * 21 19 18 24 24 H 1.48498 * 109.47329 * 180.02562 * 23 21 19 25 25 H 1.48495 * 109.47105 * 59.99889 * 23 21 19 26 26 H 1.48503 * 109.46825 * 299.99639 * 23 21 19 27 27 C 1.46932 * 118.73835 * 306.64270 * 18 17 16 28 28 C 1.52761 * 109.00441 * 53.31141 * 27 18 17 29 29 C 1.47423 * 108.70095 * 358.58507 * 11 10 9 30 30 H 1.09004 * 109.47458 * 270.19288 * 1 2 3 31 31 H 1.08999 * 109.47197 * 30.19453 * 1 2 3 32 32 H 1.09000 * 109.47071 * 150.19527 * 1 2 3 33 33 H 1.07999 * 126.59458 * 359.96280 * 3 2 1 34 34 H 1.07999 * 125.99194 * 179.71588 * 4 3 2 35 35 H 1.09006 * 110.71958 * 271.93742 * 9 7 6 36 36 H 1.08997 * 110.72208 * 35.03707 * 9 7 6 37 37 H 1.08997 * 109.98995 * 218.66507 * 10 9 7 38 38 H 1.09002 * 109.78031 * 97.49582 * 10 9 7 39 39 H 0.97002 * 119.99733 * 0.02562 * 14 12 11 40 40 H 1.09003 * 109.46085 * 324.97901 * 15 14 12 41 41 H 1.09000 * 109.50059 * 58.68105 * 16 15 14 42 42 H 1.09002 * 109.50022 * 298.57923 * 16 15 14 43 43 H 1.08999 * 109.58408 * 294.84872 * 17 16 15 44 44 H 1.09001 * 109.70539 * 174.49457 * 17 16 15 45 45 H 0.97002 * 120.00481 * 354.24867 * 22 21 19 46 46 H 1.09003 * 109.58609 * 173.14354 * 27 18 17 47 47 H 1.08993 * 109.58780 * 293.57237 * 27 18 17 48 48 H 1.09006 * 109.56299 * 185.55064 * 28 27 18 49 49 H 1.09002 * 109.38821 * 65.51517 * 28 27 18 50 50 H 1.09002 * 110.36535 * 143.19443 * 29 11 10 51 51 H 1.08997 * 110.37181 * 265.51771 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6504 -0.0056 5 7 3.5096 -0.6903 -0.0032 6 6 2.2663 -1.0870 0.0042 7 6 1.8018 -2.5206 0.0097 8 1 0.7140 -2.5774 -0.0284 9 6 2.4415 -3.3169 -1.1583 10 6 2.4463 -4.7667 -0.6292 11 7 2.3711 -4.6962 0.8374 12 6 2.3300 -5.7524 1.6735 13 8 2.2739 -5.5748 2.8750 14 7 2.3510 -7.0056 1.1778 15 6 2.3069 -8.1537 2.0866 16 6 2.9471 -9.3665 1.4074 17 6 2.9300 -10.5556 2.3730 18 7 1.5501 -10.7767 2.8266 19 6 0.9645 -12.0085 2.7051 20 1 1.2784 -12.6805 1.9200 21 6 -0.0325 -12.3936 3.5908 22 7 -0.0963 -11.8486 4.7871 23 14 -1.2835 -13.6852 3.0848 24 1 -2.2352 -13.9165 4.2011 25 1 -0.5823 -14.9533 2.7607 26 1 -2.0281 -13.2119 1.8903 27 6 0.8083 -9.6493 3.4077 28 6 0.8511 -8.4717 2.4355 29 6 2.3546 -3.2788 1.2423 30 1 -0.3634 0.0035 1.0277 31 1 -0.3633 0.8882 -0.5168 32 1 -0.3633 -0.8917 -0.5108 33 1 1.9613 2.1345 -0.0006 34 1 4.4368 1.2610 -0.0115 35 1 1.8336 -3.2348 -2.0595 36 1 3.4583 -2.9732 -1.3481 37 1 3.3653 -5.2699 -0.9295 38 1 1.5822 -5.3046 -1.0193 39 1 2.3962 -7.1472 0.2192 40 1 2.8553 -7.9165 2.9983 41 1 3.9768 -9.1313 1.1382 42 1 2.3843 -9.6194 0.5088 43 1 3.5663 -10.3388 3.2310 44 1 3.2946 -11.4478 1.8639 45 1 0.6001 -11.2408 5.0811 46 1 -0.2274 -9.9427 3.5787 47 1 1.2681 -9.3570 4.3517 48 1 0.3889 -7.5996 2.8980 49 1 0.3079 -8.7325 1.5271 50 1 1.6978 -3.1371 2.1007 51 1 3.3636 -2.9390 1.4755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319599956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:45 Heat of formation + Delta-G solvation = 61.027861 kcal Electronic energy + Delta-G solvation = -30661.250691 eV Core-core repulsion = 26597.343028 eV Total energy + Delta-G solvation = -4063.907662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.52508 -40.26718 -38.29570 -37.09338 -34.52885 -34.43777 -32.92713 -31.85615 -30.18823 -29.98259 -29.26512 -28.25599 -27.36571 -25.02353 -23.80603 -22.53598 -22.32845 -21.76156 -21.55173 -19.86237 -19.73558 -19.31903 -18.07243 -17.70618 -17.28947 -16.36576 -16.09683 -15.75925 -15.14706 -14.83973 -14.43061 -14.22995 -14.07524 -13.90242 -13.70929 -13.59919 -13.48853 -13.39114 -13.29134 -13.18879 -13.16271 -12.84852 -12.53960 -12.26439 -11.95409 -11.71698 -11.63932 -11.25032 -11.21542 -10.72074 -10.62437 -10.39824 -10.30441 -10.18473 -10.03107 -9.99393 -9.96084 -9.88675 -9.26497 -8.89172 -8.74080 -8.48605 -8.32653 -6.85696 -6.02906 -3.19830 1.60328 2.28624 2.63429 2.77488 3.34463 3.51287 3.54481 3.72886 3.86457 3.98061 4.18183 4.27741 4.35731 4.41917 4.55997 4.62394 4.65290 4.85341 4.90424 4.94723 5.09426 5.22923 5.28387 5.31023 5.32635 5.43801 5.47671 5.56582 5.58276 5.69372 5.77937 5.79562 5.90147 5.99830 6.04887 6.17949 6.31877 6.35496 6.38960 6.51019 6.59398 6.69845 6.72997 6.82546 6.90336 7.07171 7.15674 7.26967 7.73775 8.03173 8.07998 8.61482 8.74425 9.15504 9.88390 10.33272 11.25766 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024846 B = 0.001904 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.668660 B =14704.354942 C =15052.220398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.458 5.458 3 C -0.059 4.059 4 C -0.026 4.026 5 N -0.481 5.481 6 C 0.217 3.783 7 C -0.020 4.020 8 H 0.097 0.903 9 C -0.114 4.114 10 C 0.101 3.899 11 N -0.641 5.641 12 C 0.722 3.278 13 O -0.585 6.585 14 N -0.736 5.736 15 C 0.169 3.831 16 C -0.138 4.138 17 C 0.151 3.849 18 N -0.599 5.599 19 C -0.350 4.350 20 H 0.056 0.944 21 C -0.025 4.025 22 N -0.915 5.915 23 Si 1.065 2.935 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.294 1.294 27 C 0.153 3.847 28 C -0.141 4.141 29 C 0.144 3.856 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.391 0.609 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.019 0.981 44 H 0.060 0.940 45 H 0.270 0.730 46 H 0.081 0.919 47 H 0.019 0.981 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.078 0.922 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 26.087 -15.642 30.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.140 5.140 3 C -0.192 4.192 4 C -0.174 4.174 5 N -0.199 5.199 6 C -0.046 4.046 7 C -0.041 4.041 8 H 0.115 0.885 9 C -0.152 4.152 10 C -0.023 4.023 11 N -0.381 5.381 12 C 0.424 3.576 13 O -0.463 6.463 14 N -0.390 5.390 15 C 0.065 3.935 16 C -0.178 4.178 17 C 0.024 3.976 18 N -0.323 5.323 19 C -0.479 4.479 20 H 0.073 0.927 21 C -0.227 4.227 22 N -0.555 5.555 23 Si 0.895 3.105 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.027 3.973 28 C -0.182 4.182 29 C 0.019 3.981 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.192 0.808 34 H 0.188 0.812 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.224 0.776 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.037 0.963 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.037 0.963 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.097 0.903 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.698 24.779 -14.182 28.600 hybrid contribution 0.681 1.574 -1.127 2.053 sum 2.379 26.353 -15.309 30.570 Atomic orbital electron populations 1.22106 0.76564 1.04794 1.04026 1.45293 1.07651 1.06610 1.54468 1.22723 0.91392 0.92493 1.12558 1.22325 0.96475 0.91087 1.07542 1.70199 1.18208 1.12027 1.19502 1.22707 0.85893 0.89882 1.06076 1.20657 1.00209 0.85683 0.97524 0.88503 1.22648 1.03010 0.92845 0.96746 1.21989 1.01813 0.97636 0.80843 1.47507 1.79297 1.05269 1.05985 1.15463 0.77842 0.79892 0.84433 1.90938 1.58043 1.84449 1.12840 1.45475 1.79127 1.04218 1.10141 1.20875 0.97456 0.82792 0.92342 1.22328 0.99170 0.96025 1.00297 1.20829 0.87646 0.94611 0.94520 1.44154 1.08277 1.06884 1.73034 1.19949 1.21989 0.93727 1.12251 0.92659 1.25856 1.01768 1.02276 0.92827 1.70765 1.37455 1.31553 1.15745 0.83527 0.76471 0.75241 0.75275 1.21119 1.22005 1.22138 1.20843 0.98333 0.85609 0.92542 1.22382 0.95218 0.99494 1.01069 1.21917 1.02001 0.78708 0.95465 0.90160 0.89399 0.89312 0.80822 0.81213 0.89868 0.88956 0.91173 0.91434 0.77615 0.90065 0.92486 0.91831 0.96313 0.92179 0.91904 0.90100 0.96288 0.92605 0.92496 0.90331 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 10.86 59.85 0.65 0.89 16 2 N -0.46 -3.29 3.15 -121.27 -0.38 -3.67 16 3 C -0.06 -0.41 11.58 -16.56 -0.19 -0.60 16 4 C -0.03 -0.23 11.87 -17.82 -0.21 -0.44 16 5 N -0.48 -5.32 10.90 -10.82 -0.12 -5.43 16 6 C 0.22 2.00 6.58 -155.41 -1.02 0.98 16 7 C -0.02 -0.16 3.39 -89.62 -0.30 -0.46 16 8 H 0.10 0.63 6.83 -51.93 -0.35 0.28 16 9 C -0.11 -0.81 6.41 -24.89 -0.16 -0.97 16 10 C 0.10 0.84 6.15 -3.06 -0.02 0.83 16 11 N -0.64 -7.91 3.33 -176.23 -0.59 -8.50 16 12 C 0.72 11.80 8.45 -86.92 -0.73 11.06 16 13 O -0.59 -12.16 16.26 5.29 0.09 -12.08 16 14 N -0.74 -11.03 5.04 -58.64 -0.30 -11.32 16 15 C 0.17 3.05 2.42 -67.89 -0.16 2.88 16 16 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 17 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 18 N -0.60 -15.15 2.85 -172.58 -0.49 -15.64 16 19 C -0.35 -9.79 9.49 -15.06 -0.14 -9.94 16 20 H 0.06 1.54 7.94 -52.48 -0.42 1.12 16 21 C -0.03 -0.72 4.69 -17.43 -0.08 -0.80 16 22 N -0.92 -27.84 12.42 55.49 0.69 -27.15 16 23 Si 1.07 25.36 29.98 -169.99 -5.10 20.27 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.15 3.73 4.66 -3.93 -0.02 3.71 16 28 C -0.14 -2.87 5.63 -26.83 -0.15 -3.02 16 29 C 0.14 1.63 6.36 -2.53 -0.02 1.62 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.23 7.06 -51.93 -0.37 -0.14 16 33 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.77 7.83 -51.93 -0.41 0.36 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.39 4.71 7.59 -40.82 -0.31 4.40 16 40 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 45 H 0.27 8.32 6.69 -40.82 -0.27 8.05 16 46 H 0.08 2.19 6.32 -51.93 -0.33 1.87 16 47 H 0.02 0.48 7.86 -51.93 -0.41 0.08 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 51 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -36.59 402.99 -11.23 -47.82 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.37 Total: 3.27 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -2.74 Total: 6.37 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.19 Total: -71.72 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.10 Total: 20.27 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.59 -11.23 -47.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319599956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.846 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds