Wall clock time and date at job start Wed Apr 1 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36876 * 126.39741 * 2 1 4 4 C 1.34670 * 106.81669 * 180.24881 * 3 2 1 5 5 N 1.34120 * 108.02240 * 359.74214 * 4 3 2 6 6 C 1.30507 * 109.25451 * 359.97438 * 5 4 3 7 7 C 1.50703 * 125.64975 * 180.02562 * 6 5 4 8 8 H 1.08993 * 110.91733 * 182.47634 * 7 6 5 9 9 C 1.55161 * 111.00222 * 306.37714 * 7 6 5 10 10 C 1.54332 * 103.01857 * 153.38384 * 9 7 6 11 11 N 1.47022 * 107.26762 * 338.13829 * 10 9 7 12 12 C 1.34772 * 125.65209 * 178.85198 * 11 10 9 13 13 O 1.21583 * 120.00099 * 179.68941 * 12 11 10 14 14 N 1.34782 * 119.99984 * 359.69011 * 12 11 10 15 15 C 1.46497 * 120.00192 * 179.97438 * 14 12 11 16 16 C 1.53033 * 109.46005 * 205.00161 * 15 14 12 17 17 C 1.53196 * 109.31256 * 178.63244 * 16 15 14 18 18 N 1.46922 * 108.77612 * 54.63579 * 17 16 15 19 19 C 1.36936 * 120.63625 * 126.37351 * 18 17 16 20 20 H 1.08003 * 119.99356 * 332.09108 * 19 18 17 21 21 C 1.38803 * 120.00756 * 152.09452 * 19 18 17 22 22 N 1.31618 * 119.99736 * 335.49342 * 21 19 18 23 23 Si 1.86799 * 120.00355 * 155.49660 * 21 19 18 24 24 H 1.48498 * 109.47329 * 180.02562 * 23 21 19 25 25 H 1.48495 * 109.47105 * 59.99889 * 23 21 19 26 26 H 1.48503 * 109.46825 * 299.99639 * 23 21 19 27 27 C 1.46932 * 118.73835 * 306.64270 * 18 17 16 28 28 C 1.52761 * 109.00441 * 53.31141 * 27 18 17 29 29 C 1.47423 * 108.70095 * 358.58507 * 11 10 9 30 30 H 1.09004 * 109.47458 * 270.19288 * 1 2 3 31 31 H 1.08999 * 109.47197 * 30.19453 * 1 2 3 32 32 H 1.09000 * 109.47071 * 150.19527 * 1 2 3 33 33 H 1.07999 * 126.59458 * 359.96280 * 3 2 1 34 34 H 1.07999 * 125.99194 * 179.71588 * 4 3 2 35 35 H 1.09006 * 110.71958 * 271.93742 * 9 7 6 36 36 H 1.08997 * 110.72208 * 35.03707 * 9 7 6 37 37 H 1.08997 * 109.98995 * 218.66507 * 10 9 7 38 38 H 1.09002 * 109.78031 * 97.49582 * 10 9 7 39 39 H 0.97002 * 119.99733 * 0.02562 * 14 12 11 40 40 H 1.09003 * 109.46085 * 324.97901 * 15 14 12 41 41 H 1.09000 * 109.50059 * 58.68105 * 16 15 14 42 42 H 1.09002 * 109.50022 * 298.57923 * 16 15 14 43 43 H 1.08999 * 109.58408 * 294.84872 * 17 16 15 44 44 H 1.09001 * 109.70539 * 174.49457 * 17 16 15 45 45 H 0.97002 * 120.00481 * 354.24867 * 22 21 19 46 46 H 1.09003 * 109.58609 * 173.14354 * 27 18 17 47 47 H 1.08993 * 109.58780 * 293.57237 * 27 18 17 48 48 H 1.09006 * 109.56299 * 185.55064 * 28 27 18 49 49 H 1.09002 * 109.38821 * 65.51517 * 28 27 18 50 50 H 1.09002 * 110.36535 * 143.19443 * 29 11 10 51 51 H 1.08997 * 110.37181 * 265.51771 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6504 -0.0056 5 7 3.5096 -0.6903 -0.0032 6 6 2.2663 -1.0870 0.0042 7 6 1.8018 -2.5206 0.0097 8 1 0.7140 -2.5774 -0.0284 9 6 2.4415 -3.3169 -1.1583 10 6 2.4463 -4.7667 -0.6292 11 7 2.3711 -4.6962 0.8374 12 6 2.3300 -5.7524 1.6735 13 8 2.2739 -5.5748 2.8750 14 7 2.3510 -7.0056 1.1778 15 6 2.3069 -8.1537 2.0866 16 6 2.9471 -9.3665 1.4074 17 6 2.9300 -10.5556 2.3730 18 7 1.5501 -10.7767 2.8266 19 6 0.9645 -12.0085 2.7051 20 1 1.2784 -12.6805 1.9200 21 6 -0.0325 -12.3936 3.5908 22 7 -0.0963 -11.8486 4.7871 23 14 -1.2835 -13.6852 3.0848 24 1 -2.2352 -13.9165 4.2011 25 1 -0.5823 -14.9533 2.7607 26 1 -2.0281 -13.2119 1.8903 27 6 0.8083 -9.6493 3.4077 28 6 0.8511 -8.4717 2.4355 29 6 2.3546 -3.2788 1.2423 30 1 -0.3634 0.0035 1.0277 31 1 -0.3633 0.8882 -0.5168 32 1 -0.3633 -0.8917 -0.5108 33 1 1.9613 2.1345 -0.0006 34 1 4.4368 1.2610 -0.0115 35 1 1.8336 -3.2348 -2.0595 36 1 3.4583 -2.9732 -1.3481 37 1 3.3653 -5.2699 -0.9295 38 1 1.5822 -5.3046 -1.0193 39 1 2.3962 -7.1472 0.2192 40 1 2.8553 -7.9165 2.9983 41 1 3.9768 -9.1313 1.1382 42 1 2.3843 -9.6194 0.5088 43 1 3.5663 -10.3388 3.2310 44 1 3.2946 -11.4478 1.8639 45 1 0.6001 -11.2408 5.0811 46 1 -0.2274 -9.9427 3.5787 47 1 1.2681 -9.3570 4.3517 48 1 0.3889 -7.5996 2.8980 49 1 0.3079 -8.7325 1.5271 50 1 1.6978 -3.1371 2.1007 51 1 3.3636 -2.9390 1.4755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319599956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:44 Heat of formation + Delta-G solvation = 37.162360 kcal Electronic energy + Delta-G solvation = -30662.285577 eV Core-core repulsion = 26597.343028 eV Total energy + Delta-G solvation = -4064.942548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.09457 -41.45308 -39.64269 -38.45155 -36.20365 -34.93021 -34.26484 -33.25982 -31.89194 -30.96990 -30.68302 -29.04050 -27.79079 -26.79351 -25.03579 -24.02121 -23.39710 -23.19033 -22.14558 -21.24704 -20.81390 -20.37237 -19.55814 -18.93775 -18.30532 -17.43245 -16.86656 -16.60249 -16.39674 -16.11214 -15.95967 -15.58784 -15.34659 -15.20557 -15.01432 -14.72739 -14.56929 -14.48876 -14.19297 -14.02967 -13.89446 -13.81643 -13.65355 -13.49652 -13.29539 -12.95997 -12.65270 -12.54444 -12.45217 -12.39637 -12.08345 -11.95516 -11.83116 -11.80517 -11.64765 -11.43105 -11.20747 -10.92858 -10.54602 -10.48119 -10.22488 -9.58542 -9.31579 -8.95838 -8.24548 -5.40358 1.03654 1.44806 1.59782 1.68020 1.86390 1.92023 2.06236 2.14177 2.67662 2.92263 3.22786 3.25661 3.52083 3.58534 3.66184 3.77675 3.81915 3.96024 3.97776 4.13034 4.22627 4.23502 4.28464 4.32275 4.40699 4.51097 4.51969 4.61046 4.65906 4.68841 4.70976 4.71831 4.77951 4.87281 4.89481 4.95556 4.98435 5.00961 5.13285 5.15011 5.15834 5.25661 5.35756 5.40412 5.51633 5.84554 5.85411 5.99106 6.22167 6.38155 6.93442 7.04565 7.14534 7.50322 7.77319 8.22948 9.01015 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024846 B = 0.001904 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.668660 B =14704.354942 C =15052.220398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.457 5.457 3 C -0.046 4.046 4 C -0.059 4.059 5 N -0.519 5.519 6 C 0.199 3.801 7 C -0.007 4.007 8 H 0.119 0.881 9 C -0.103 4.103 10 C 0.095 3.905 11 N -0.635 5.635 12 C 0.716 3.284 13 O -0.638 6.638 14 N -0.720 5.720 15 C 0.182 3.818 16 C -0.120 4.120 17 C 0.143 3.857 18 N -0.616 5.616 19 C -0.352 4.352 20 H 0.059 0.941 21 C -0.081 4.081 22 N -0.946 5.946 23 Si 1.117 2.883 24 H -0.296 1.296 25 H -0.273 1.273 26 H -0.277 1.277 27 C 0.162 3.838 28 C -0.125 4.125 29 C 0.142 3.858 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.208 0.792 34 H 0.181 0.819 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.410 0.590 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.012 0.988 44 H 0.066 0.934 45 H 0.252 0.748 46 H 0.047 0.953 47 H -0.005 1.005 48 H 0.047 0.953 49 H 0.064 0.936 50 H 0.060 0.940 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 27.049 -19.307 33.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.139 5.139 3 C -0.180 4.180 4 C -0.206 4.206 5 N -0.239 5.239 6 C -0.064 4.064 7 C -0.028 4.028 8 H 0.137 0.863 9 C -0.142 4.142 10 C -0.027 4.027 11 N -0.373 5.373 12 C 0.418 3.582 13 O -0.520 6.520 14 N -0.375 5.375 15 C 0.076 3.924 16 C -0.159 4.159 17 C 0.018 3.982 18 N -0.341 5.341 19 C -0.482 4.482 20 H 0.077 0.923 21 C -0.277 4.277 22 N -0.588 5.588 23 Si 0.942 3.058 24 H -0.222 1.222 25 H -0.199 1.199 26 H -0.203 1.203 27 C 0.036 3.964 28 C -0.165 4.165 29 C 0.018 3.982 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.225 0.775 34 H 0.198 0.802 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.247 0.753 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.030 0.970 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.013 0.987 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.079 0.921 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.035 25.777 -17.948 31.427 hybrid contribution 0.975 1.389 0.035 1.697 sum 2.010 27.165 -17.914 32.602 Atomic orbital electron populations 1.22409 0.74332 1.06598 1.04837 1.45534 1.09035 1.06020 1.53309 1.23250 0.90757 0.93783 1.10189 1.22700 0.98081 0.90761 1.09105 1.70119 1.19751 1.13415 1.20592 1.22757 0.85962 0.90645 1.07030 1.20589 1.01254 0.85050 0.95906 0.86331 1.22615 1.02822 0.91434 0.97284 1.22307 1.03388 0.99021 0.77974 1.47485 1.77658 1.04578 1.07609 1.15630 0.77669 0.80767 0.84106 1.90906 1.60294 1.85302 1.15455 1.45044 1.78841 1.02988 1.10631 1.20492 0.95272 0.84310 0.92326 1.22116 1.01378 0.93316 0.99100 1.21030 0.85254 0.96781 0.95171 1.44385 1.10137 1.06349 1.73205 1.20258 1.21774 0.94578 1.11591 0.92323 1.27310 1.03968 1.04081 0.92359 1.70899 1.37458 1.33053 1.17353 0.82832 0.74246 0.73737 0.75028 1.22210 1.19862 1.20326 1.20597 0.96020 0.87004 0.92809 1.22148 0.97247 0.97150 0.99952 1.21897 1.00748 0.78730 0.96852 0.89817 0.87108 0.88131 0.77539 0.80221 0.86882 0.90257 0.90050 0.89235 0.75314 0.92720 0.89040 0.90486 0.97033 0.91528 0.93862 0.93466 0.98719 0.93415 0.91707 0.92099 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 10.86 127.77 1.39 1.63 16 2 N -0.46 -5.64 3.15 -537.60 -1.69 -7.34 16 3 C -0.05 -0.55 11.58 83.09 0.96 0.41 16 4 C -0.06 -1.01 11.87 83.52 0.99 -0.02 16 5 N -0.52 -11.41 10.90 -188.13 -2.05 -13.46 16 6 C 0.20 3.45 6.58 138.13 0.91 4.36 16 7 C -0.01 -0.10 3.39 -10.15 -0.03 -0.14 16 8 H 0.12 1.21 6.83 -2.39 -0.02 1.19 16 9 C -0.10 -1.20 6.41 31.79 0.20 -0.99 16 10 C 0.09 1.31 6.15 86.73 0.53 1.85 16 11 N -0.64 -14.99 3.33 -829.75 -2.76 -17.75 16 12 C 0.72 23.07 8.45 179.05 1.51 24.59 16 13 O -0.64 -27.33 16.26 -3.98 -0.06 -27.39 16 14 N -0.72 -20.26 5.04 -457.69 -2.31 -22.57 16 15 C 0.18 6.38 2.42 45.02 0.11 6.49 16 16 C -0.12 -3.79 5.55 30.67 0.17 -3.62 16 17 C 0.14 5.92 6.52 86.36 0.56 6.48 16 18 N -0.62 -31.46 2.85 -699.93 -2.00 -33.46 16 19 C -0.35 -19.76 9.49 84.03 0.80 -18.96 16 20 H 0.06 3.21 7.94 -2.91 -0.02 3.18 16 21 C -0.08 -4.71 4.69 84.86 0.40 -4.31 16 22 N -0.95 -59.52 12.42 21.65 0.27 -59.25 16 23 Si 1.12 51.18 29.98 68.60 2.06 53.24 16 24 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 27 C 0.16 8.22 4.66 86.22 0.40 8.62 16 28 C -0.12 -5.09 5.63 30.53 0.17 -4.92 16 29 C 0.14 3.25 6.36 86.86 0.55 3.80 16 30 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.10 0.18 7.06 -2.39 -0.02 0.16 16 33 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.08 1.18 7.83 -2.39 -0.02 1.16 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.41 8.45 7.59 -92.71 -0.70 7.75 16 40 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 41 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 45 H 0.25 16.34 6.69 -92.71 -0.62 15.72 16 46 H 0.05 2.68 6.32 -2.39 -0.02 2.67 16 47 H -0.01 -0.28 7.86 -2.39 -0.02 -0.30 16 48 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 49 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 50 H 0.06 1.58 8.04 -2.39 -0.02 1.56 16 51 H 0.06 1.54 7.93 -2.39 -0.02 1.52 16 Total: -1.00 -84.30 402.99 1.46 -82.84 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.37 Total: 19.88 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 9.63 Total: 25.27 kcal Atomic # 7 Polarization: -143.29 SS G_CDS: -10.54 Total: -153.83 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.06 Total: 53.24 kcal Total: -84.30 1.46 -82.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319599956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.001 kcal (2) G-P(sol) polarization free energy of solvation -84.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds