Wall clock time and date at job start Wed Apr 1 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36741 * 127.13793 * 2 1 4 4 C 1.50697 * 126.34736 * 0.04873 * 3 2 1 5 5 C 1.52998 * 109.46822 * 90.00595 * 4 3 2 6 6 C 1.50710 * 109.47028 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99743 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99829 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00225 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99606 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46885 * 89.99874 * 10 8 6 12 12 H 1.48503 * 109.46825 * 209.99522 * 10 8 6 13 13 H 1.48494 * 109.46967 * 329.99741 * 10 8 6 14 14 N 1.30302 * 107.30423 * 180.02562 * 3 2 1 15 15 N 1.28529 * 110.04839 * 359.72731 * 14 3 2 16 16 C 1.31214 * 109.86499 * 0.44792 * 15 14 3 17 17 N 1.38576 * 126.47120 * 179.82234 * 16 15 14 18 18 C 1.46845 * 110.99958 * 123.65002 * 17 16 15 19 19 C 1.53032 * 109.52582 * 174.16042 * 18 17 16 20 20 C 1.53120 * 109.28193 * 59.17344 * 19 18 17 21 21 C 1.53115 * 109.16020 * 302.35007 * 20 19 18 22 22 H 1.09002 * 109.50357 * 297.67025 * 21 20 19 23 23 N 1.46502 * 109.50450 * 177.58895 * 21 20 19 24 24 C 1.46769 * 124.34688 * 120.07792 * 23 21 20 25 25 C 1.54485 * 105.47030 * 197.03928 * 24 23 21 26 26 C 1.54627 * 101.76594 * 334.58477 * 25 24 23 27 27 C 1.34417 * 124.35146 * 300.10812 * 23 21 20 28 28 O 1.21279 * 124.94464 * 359.59579 * 27 23 21 29 29 C 1.46847 * 110.99965 * 359.39340 * 17 16 15 30 30 H 1.09002 * 109.47323 * 269.98084 * 1 2 3 31 31 H 1.09000 * 109.46968 * 29.97825 * 1 2 3 32 32 H 1.08995 * 109.47284 * 149.97590 * 1 2 3 33 33 H 1.09004 * 109.47202 * 209.99939 * 4 3 2 34 34 H 1.08996 * 109.47032 * 330.00158 * 4 3 2 35 35 H 1.09002 * 109.47205 * 299.99749 * 5 4 3 36 36 H 1.08996 * 109.47673 * 59.99957 * 5 4 3 37 37 H 0.97003 * 119.99875 * 180.02562 * 9 8 6 38 38 H 1.08994 * 109.46904 * 54.13867 * 18 17 16 39 39 H 1.09002 * 109.45194 * 294.16448 * 18 17 16 40 40 H 1.09003 * 109.50217 * 299.23489 * 19 18 17 41 41 H 1.09001 * 109.50811 * 179.11529 * 19 18 17 42 42 H 1.09001 * 109.52893 * 182.43985 * 20 19 18 43 43 H 1.09009 * 109.57380 * 62.28244 * 20 19 18 44 44 H 1.08998 * 110.24703 * 78.04283 * 24 23 21 45 45 H 1.08997 * 110.24528 * 316.03524 * 24 23 21 46 46 H 1.09000 * 110.96819 * 216.46072 * 25 24 23 47 47 H 1.08997 * 110.96657 * 92.70464 * 25 24 23 48 48 H 1.09005 * 110.48027 * 143.47533 * 26 25 24 49 49 H 1.09000 * 110.48552 * 266.11612 * 26 25 24 50 50 H 1.08999 * 109.42802 * 65.80640 * 29 17 16 51 51 H 1.08995 * 109.49671 * 305.84143 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8622 2.5349 0.0010 5 6 1.7183 3.0231 1.4439 6 6 1.2905 4.4682 1.4450 7 1 1.1371 4.9865 0.5101 8 6 1.0961 5.1286 2.6395 9 7 1.2835 4.4975 3.7780 10 14 0.5652 6.9196 2.6408 11 1 -0.9178 6.9962 2.6427 12 1 1.0972 7.5927 3.8529 13 1 1.0942 7.5936 1.4279 14 7 3.5163 0.6480 -0.0006 15 7 3.5211 -0.6373 0.0048 16 6 2.2887 -1.0878 -0.0005 17 7 1.8977 -2.4173 -0.0007 18 6 1.0150 -2.7063 1.1367 19 6 0.4881 -4.1387 1.0241 20 6 1.6697 -5.1124 1.0107 21 6 2.5986 -4.7594 -0.1542 22 1 2.0621 -4.8764 -1.0958 23 7 3.7615 -5.6503 -0.1398 24 6 4.1268 -6.5529 -1.2380 25 6 5.1123 -7.5717 -0.6235 26 6 5.6992 -6.7682 0.5600 27 6 4.6307 -5.7465 0.8810 28 8 4.5674 -5.1075 1.9098 29 6 3.0644 -3.3090 -0.0085 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 2.6118 3.1365 -0.5130 34 1 0.9053 2.6305 -0.5121 35 1 0.9687 2.4215 1.9580 36 1 2.6752 2.9275 1.9570 37 1 1.1464 4.9621 4.6184 38 1 0.1768 -2.0096 1.1322 39 1 1.5733 -2.5968 2.0665 40 1 -0.0818 -4.2453 0.1011 41 1 -0.1545 -4.3582 1.8767 42 1 1.3012 -6.1308 0.8870 43 1 2.2176 -5.0349 1.9498 44 1 4.6117 -5.9953 -2.0392 45 1 3.2418 -7.0649 -1.6157 46 1 5.8911 -7.8402 -1.3372 47 1 4.5864 -8.4587 -0.2703 48 1 5.8721 -7.4210 1.4157 49 1 6.6239 -6.2731 0.2637 50 1 3.6133 -3.1960 0.9264 51 1 3.7143 -3.0504 -0.8444 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338399974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:13 Heat of formation + Delta-G solvation = 49.371065 kcal Electronic energy + Delta-G solvation = -31242.248287 eV Core-core repulsion = 27177.835148 eV Total energy + Delta-G solvation = -4064.413139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.59010 -40.95375 -38.80789 -36.61773 -34.90076 -34.59335 -33.54529 -32.54824 -31.52824 -29.33447 -28.43051 -27.89513 -27.40430 -25.36209 -24.63981 -23.71896 -22.34245 -21.77337 -21.36518 -20.32779 -19.89660 -19.09549 -17.54640 -16.94498 -16.62399 -16.32848 -15.97578 -15.87813 -15.47761 -15.00244 -14.82711 -14.47987 -14.33548 -14.09582 -13.98472 -13.69365 -13.53927 -13.28506 -13.17616 -13.07913 -12.97997 -12.70445 -12.47407 -12.25556 -12.06740 -11.78874 -11.50096 -11.33739 -11.21525 -11.07974 -11.02656 -10.97799 -10.89791 -10.67328 -10.28629 -10.06870 -9.87260 -9.82117 -9.74547 -9.32917 -9.19936 -9.00181 -8.40532 -7.88259 -6.04477 -4.08779 2.11664 2.34738 2.41996 2.76857 3.29446 3.29994 3.36806 3.40323 3.76801 3.99186 4.06514 4.37745 4.41791 4.44628 4.52031 4.57351 4.67605 4.72347 4.86453 4.98768 5.05230 5.08977 5.13094 5.18769 5.23235 5.24449 5.27869 5.31347 5.34218 5.40988 5.47421 5.51743 5.54476 5.57889 5.67177 5.73597 5.75887 5.85479 5.95642 6.20179 6.32237 6.37401 6.48199 6.67542 6.72595 6.84689 6.95842 7.44255 7.56578 7.70891 7.93030 7.94582 8.30440 8.97460 9.25652 9.55765 11.06609 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.002148 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.430294 B =13032.079913 C =13243.201965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.483 5.483 3 C 0.212 3.788 4 C -0.030 4.030 5 C 0.032 3.968 6 C -0.524 4.524 7 H 0.059 0.941 8 C 0.058 3.942 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.272 1.272 14 N -0.295 5.295 15 N -0.322 5.322 16 C 0.336 3.664 17 N -0.445 5.445 18 C 0.044 3.956 19 C -0.108 4.108 20 C -0.137 4.137 21 C 0.164 3.836 22 H 0.098 0.902 23 N -0.617 5.617 24 C 0.102 3.898 25 C -0.131 4.131 26 C -0.157 4.157 27 C 0.515 3.485 28 O -0.521 6.521 29 C 0.061 3.939 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.013 0.987 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.070 0.930 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -28.262 -11.513 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.178 5.178 3 C -0.056 4.056 4 C -0.070 4.070 5 C -0.006 4.006 6 C -0.562 4.562 7 H 0.077 0.923 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 N -0.133 5.133 15 N -0.166 5.166 16 C -0.021 4.021 17 N -0.169 5.169 18 C -0.084 4.084 19 C -0.146 4.146 20 C -0.176 4.176 21 C 0.061 3.939 22 H 0.116 0.884 23 N -0.352 5.352 24 C -0.020 4.020 25 C -0.169 4.169 26 C -0.197 4.197 27 C 0.303 3.697 28 O -0.397 6.397 29 C -0.067 4.067 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.119 0.881 49 H 0.123 0.877 50 H 0.088 0.912 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.142 -27.969 -11.202 30.129 hybrid contribution -1.402 1.039 0.700 1.880 sum -1.260 -26.929 -10.502 28.932 Atomic orbital electron populations 1.22081 0.75855 1.04756 1.03932 1.46037 1.08472 1.05761 1.57527 1.25552 0.86141 0.92319 1.01538 1.20431 1.00760 0.82593 1.03186 1.19067 0.97850 0.95872 0.87849 1.21141 1.46499 0.95996 0.92551 0.92276 1.25023 0.95415 0.98314 0.95586 1.69975 1.48945 1.36812 0.97348 0.86548 0.78656 0.84860 0.77676 1.20684 1.21185 1.19717 1.74001 1.17672 1.01938 1.19691 1.74526 1.15372 1.04133 1.22562 1.22349 0.87325 0.86719 1.05698 1.58519 1.18870 0.97404 1.42100 1.22445 0.96494 0.98219 0.91195 1.21520 0.97360 0.92602 1.03161 1.22025 0.96402 0.99379 0.99760 1.20911 0.84866 0.87937 1.00149 0.88433 1.48325 1.27158 1.41455 1.18261 1.22117 0.99146 0.91122 0.89664 1.22591 0.98963 0.97749 0.97598 1.22355 0.98815 0.98064 1.00470 1.20939 0.82782 0.83172 0.82835 1.90758 1.74635 1.47744 1.26542 1.22304 0.90316 0.89593 1.04508 0.90208 0.88699 0.89431 0.89294 0.91257 0.96835 0.95647 0.92866 0.89710 0.93008 0.90612 0.90161 0.91231 0.90149 0.90837 0.90264 0.89087 0.90005 0.88098 0.87681 0.91155 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 9.29 59.85 0.56 1.52 16 2 N -0.48 -8.41 3.21 -121.46 -0.39 -8.80 16 3 C 0.21 4.39 7.32 -154.01 -1.13 3.27 16 4 C -0.03 -0.62 5.53 -27.89 -0.15 -0.78 16 5 C 0.03 0.82 4.96 -27.88 -0.14 0.69 16 6 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 7 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 10 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 N -0.29 -6.76 12.18 32.99 0.40 -6.36 16 15 N -0.32 -6.87 11.25 30.31 0.34 -6.53 16 16 C 0.34 6.01 7.21 -318.89 -2.30 3.71 16 17 N -0.44 -6.16 4.70 -174.56 -0.82 -6.98 16 18 C 0.04 0.52 5.28 -3.84 -0.02 0.50 16 19 C -0.11 -0.91 6.09 -26.65 -0.16 -1.08 16 20 C -0.14 -1.27 5.32 -26.61 -0.14 -1.41 16 21 C 0.16 1.58 2.91 -67.85 -0.20 1.39 16 22 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 23 N -0.62 -5.41 2.83 -164.75 -0.47 -5.88 16 24 C 0.10 0.50 7.30 -3.12 -0.02 0.48 16 25 C -0.13 -0.47 7.18 -25.10 -0.18 -0.65 16 26 C -0.16 -1.02 6.86 -26.74 -0.18 -1.20 16 27 C 0.52 5.62 7.40 -10.86 -0.08 5.54 16 28 O -0.52 -8.15 15.08 5.56 0.08 -8.07 16 29 C 0.06 0.82 4.18 -3.83 -0.02 0.81 16 30 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 31 H 0.09 1.11 7.25 -51.93 -0.38 0.73 16 32 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 33 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 34 H 0.07 1.27 7.27 -51.93 -0.38 0.89 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.08 0.93 5.23 -51.93 -0.27 0.66 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.97 6.73 -51.92 -0.35 0.62 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 1.19 6.75 -51.93 -0.35 0.84 16 51 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -36.93 401.30 -12.06 -48.99 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.39 Total: -2.24 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -4.58 Total: -0.44 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.20 Total: -60.66 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.93 -12.06 -48.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338399974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.358 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds