Wall clock time and date at job start Wed Apr 1 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36741 * 127.13793 * 2 1 4 4 C 1.50697 * 126.34736 * 0.04873 * 3 2 1 5 5 C 1.52998 * 109.46822 * 90.00595 * 4 3 2 6 6 C 1.50710 * 109.47028 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99743 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99829 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00225 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99606 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46885 * 89.99874 * 10 8 6 12 12 H 1.48503 * 109.46825 * 209.99522 * 10 8 6 13 13 H 1.48494 * 109.46967 * 329.99741 * 10 8 6 14 14 N 1.30302 * 107.30423 * 180.02562 * 3 2 1 15 15 N 1.28529 * 110.04839 * 359.72731 * 14 3 2 16 16 C 1.31214 * 109.86499 * 0.44792 * 15 14 3 17 17 N 1.38576 * 126.47120 * 179.82234 * 16 15 14 18 18 C 1.46845 * 110.99958 * 123.65002 * 17 16 15 19 19 C 1.53032 * 109.52582 * 174.16042 * 18 17 16 20 20 C 1.53120 * 109.28193 * 59.17344 * 19 18 17 21 21 C 1.53115 * 109.16020 * 302.35007 * 20 19 18 22 22 H 1.09002 * 109.50357 * 297.67025 * 21 20 19 23 23 N 1.46502 * 109.50450 * 177.58895 * 21 20 19 24 24 C 1.46769 * 124.34688 * 120.07792 * 23 21 20 25 25 C 1.54485 * 105.47030 * 197.03928 * 24 23 21 26 26 C 1.54627 * 101.76594 * 334.58477 * 25 24 23 27 27 C 1.34417 * 124.35146 * 300.10812 * 23 21 20 28 28 O 1.21279 * 124.94464 * 359.59579 * 27 23 21 29 29 C 1.46847 * 110.99965 * 359.39340 * 17 16 15 30 30 H 1.09002 * 109.47323 * 269.98084 * 1 2 3 31 31 H 1.09000 * 109.46968 * 29.97825 * 1 2 3 32 32 H 1.08995 * 109.47284 * 149.97590 * 1 2 3 33 33 H 1.09004 * 109.47202 * 209.99939 * 4 3 2 34 34 H 1.08996 * 109.47032 * 330.00158 * 4 3 2 35 35 H 1.09002 * 109.47205 * 299.99749 * 5 4 3 36 36 H 1.08996 * 109.47673 * 59.99957 * 5 4 3 37 37 H 0.97003 * 119.99875 * 180.02562 * 9 8 6 38 38 H 1.08994 * 109.46904 * 54.13867 * 18 17 16 39 39 H 1.09002 * 109.45194 * 294.16448 * 18 17 16 40 40 H 1.09003 * 109.50217 * 299.23489 * 19 18 17 41 41 H 1.09001 * 109.50811 * 179.11529 * 19 18 17 42 42 H 1.09001 * 109.52893 * 182.43985 * 20 19 18 43 43 H 1.09009 * 109.57380 * 62.28244 * 20 19 18 44 44 H 1.08998 * 110.24703 * 78.04283 * 24 23 21 45 45 H 1.08997 * 110.24528 * 316.03524 * 24 23 21 46 46 H 1.09000 * 110.96819 * 216.46072 * 25 24 23 47 47 H 1.08997 * 110.96657 * 92.70464 * 25 24 23 48 48 H 1.09005 * 110.48027 * 143.47533 * 26 25 24 49 49 H 1.09000 * 110.48552 * 266.11612 * 26 25 24 50 50 H 1.08999 * 109.42802 * 65.80640 * 29 17 16 51 51 H 1.08995 * 109.49671 * 305.84143 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8622 2.5349 0.0010 5 6 1.7183 3.0231 1.4439 6 6 1.2905 4.4682 1.4450 7 1 1.1371 4.9865 0.5101 8 6 1.0961 5.1286 2.6395 9 7 1.2835 4.4975 3.7780 10 14 0.5652 6.9196 2.6408 11 1 -0.9178 6.9962 2.6427 12 1 1.0972 7.5927 3.8529 13 1 1.0942 7.5936 1.4279 14 7 3.5163 0.6480 -0.0006 15 7 3.5211 -0.6373 0.0048 16 6 2.2887 -1.0878 -0.0005 17 7 1.8977 -2.4173 -0.0007 18 6 1.0150 -2.7063 1.1367 19 6 0.4881 -4.1387 1.0241 20 6 1.6697 -5.1124 1.0107 21 6 2.5986 -4.7594 -0.1542 22 1 2.0621 -4.8764 -1.0958 23 7 3.7615 -5.6503 -0.1398 24 6 4.1268 -6.5529 -1.2380 25 6 5.1123 -7.5717 -0.6235 26 6 5.6992 -6.7682 0.5600 27 6 4.6307 -5.7465 0.8810 28 8 4.5674 -5.1075 1.9098 29 6 3.0644 -3.3090 -0.0085 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 2.6118 3.1365 -0.5130 34 1 0.9053 2.6305 -0.5121 35 1 0.9687 2.4215 1.9580 36 1 2.6752 2.9275 1.9570 37 1 1.1464 4.9621 4.6184 38 1 0.1768 -2.0096 1.1322 39 1 1.5733 -2.5968 2.0665 40 1 -0.0818 -4.2453 0.1011 41 1 -0.1545 -4.3582 1.8767 42 1 1.3012 -6.1308 0.8870 43 1 2.2176 -5.0349 1.9498 44 1 4.6117 -5.9953 -2.0392 45 1 3.2418 -7.0649 -1.6157 46 1 5.8911 -7.8402 -1.3372 47 1 4.5864 -8.4587 -0.2703 48 1 5.8721 -7.4210 1.4157 49 1 6.6239 -6.2731 0.2637 50 1 3.6133 -3.1960 0.9264 51 1 3.7143 -3.0504 -0.8444 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338399974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:12 Heat of formation + Delta-G solvation = 26.539721 kcal Electronic energy + Delta-G solvation = -31243.238328 eV Core-core repulsion = 27177.835148 eV Total energy + Delta-G solvation = -4065.403180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.09223 -41.72800 -39.81744 -37.43674 -36.45894 -35.93768 -35.02933 -33.54825 -33.18486 -30.21743 -30.03520 -28.62707 -28.43368 -27.22344 -25.77444 -24.69055 -23.64078 -22.81711 -22.48962 -21.49674 -21.34654 -19.94941 -18.74802 -18.46469 -17.63560 -17.47781 -17.35364 -17.06070 -16.50564 -16.28208 -16.05625 -15.81428 -15.40170 -15.00458 -14.93884 -14.79785 -14.64577 -14.47372 -14.36743 -14.20639 -13.91431 -13.85672 -13.64187 -13.30056 -13.16590 -12.88436 -12.85191 -12.68897 -12.48571 -12.28837 -12.14955 -12.06463 -11.95549 -11.85159 -11.78274 -11.71448 -11.51772 -11.34418 -11.18972 -10.88621 -10.62055 -10.58892 -9.74396 -9.38909 -8.21902 -6.34793 0.67214 1.15765 1.41852 1.44281 1.55317 1.55892 1.71687 1.94497 2.40944 2.59118 3.12348 3.37350 3.44200 3.55119 3.62875 3.64677 3.77295 3.79789 3.85154 4.02142 4.09357 4.12058 4.16115 4.22750 4.27674 4.31161 4.43029 4.51276 4.57393 4.63439 4.64982 4.69122 4.72398 4.76597 4.77849 4.87518 4.89680 4.92817 4.98568 5.03924 5.11957 5.21015 5.25399 5.40069 5.42957 5.45771 5.56451 5.68692 5.76287 6.06632 6.14491 6.15922 6.81486 7.15909 7.35565 7.68740 8.90315 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.002148 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.430294 B =13032.079913 C =13243.201965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.478 5.478 3 C 0.199 3.801 4 C -0.013 4.013 5 C 0.043 3.957 6 C -0.537 4.537 7 H 0.075 0.925 8 C -0.002 4.002 9 N -0.937 5.937 10 Si 0.971 3.029 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.259 1.259 14 N -0.335 5.335 15 N -0.365 5.365 16 C 0.348 3.652 17 N -0.426 5.426 18 C 0.040 3.960 19 C -0.097 4.097 20 C -0.132 4.132 21 C 0.169 3.831 22 H 0.130 0.870 23 N -0.615 5.615 24 C 0.095 3.905 25 C -0.116 4.116 26 C -0.155 4.155 27 C 0.497 3.503 28 O -0.584 6.584 29 C 0.068 3.932 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.102 0.898 35 H -0.005 1.005 36 H -0.023 1.023 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.016 0.984 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.108 0.892 50 H 0.025 0.975 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -30.059 -14.310 33.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.173 5.173 3 C -0.070 4.070 4 C -0.053 4.053 5 C 0.005 3.995 6 C -0.575 4.575 7 H 0.093 0.907 8 C -0.200 4.200 9 N -0.577 5.577 10 Si 0.795 3.205 11 H -0.192 1.192 12 H -0.215 1.215 13 H -0.183 1.183 14 N -0.174 5.174 15 N -0.209 5.209 16 C -0.010 4.010 17 N -0.150 5.150 18 C -0.087 4.087 19 C -0.135 4.135 20 C -0.171 4.171 21 C 0.066 3.934 22 H 0.148 0.852 23 N -0.349 5.349 24 C -0.026 4.026 25 C -0.154 4.154 26 C -0.195 4.195 27 C 0.287 3.713 28 O -0.464 6.464 29 C -0.060 4.060 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.013 0.987 36 H -0.004 1.004 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.034 0.966 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.134 0.866 47 H 0.114 0.886 48 H 0.124 0.876 49 H 0.127 0.873 50 H 0.044 0.956 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.576 -29.806 -14.060 33.056 hybrid contribution -0.545 1.511 1.586 2.257 sum -3.121 -28.295 -12.474 31.080 Atomic orbital electron populations 1.22520 0.72770 1.07294 1.04955 1.46210 1.10125 1.04473 1.56445 1.25390 0.86351 0.92958 1.02348 1.20163 1.02477 0.82685 0.99932 1.18836 0.94549 0.95692 0.90468 1.21593 1.45888 0.96749 0.93275 0.90672 1.26050 0.95367 1.03467 0.95111 1.70137 1.50343 1.39030 0.98165 0.85354 0.78761 0.78541 0.77830 1.19213 1.21469 1.18339 1.73878 1.19520 1.03008 1.20958 1.74420 1.17754 1.03743 1.25030 1.22812 0.86705 0.88391 1.03096 1.58777 1.18657 0.95188 1.42365 1.22638 0.95817 1.01468 0.88749 1.21552 0.97177 0.89266 1.05509 1.21985 0.96191 1.01197 0.97698 1.20938 0.85468 0.85226 1.01809 0.85225 1.48525 1.26353 1.41181 1.18797 1.22467 1.00780 0.90878 0.88491 1.22632 0.99149 0.97209 0.96394 1.22404 0.97544 0.97321 1.02200 1.21822 0.83877 0.83303 0.82339 1.90723 1.76273 1.50255 1.29181 1.22250 0.89960 0.92410 1.01424 0.89879 0.87289 0.85883 0.89352 0.87935 0.98698 1.00420 0.92830 0.88283 0.96555 0.87584 0.88326 0.88397 0.93862 0.90181 0.87526 0.86614 0.88590 0.87608 0.87348 0.95621 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.51 9.29 127.77 1.19 2.70 16 2 N -0.48 -16.69 3.21 -538.19 -1.73 -18.41 16 3 C 0.20 8.49 7.32 137.64 1.01 9.50 16 4 C -0.01 -0.55 5.53 29.85 0.16 -0.38 16 5 C 0.04 2.30 4.96 29.85 0.15 2.45 16 6 C -0.54 -29.84 9.11 25.60 0.23 -29.60 16 7 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 8 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 9 N -0.94 -57.92 13.29 21.45 0.28 -57.63 16 10 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 14 N -0.34 -16.27 12.18 -49.53 -0.60 -16.87 16 15 N -0.37 -16.59 11.25 -58.01 -0.65 -17.24 16 16 C 0.35 12.80 7.21 260.12 1.88 14.68 16 17 N -0.43 -11.76 4.70 -706.19 -3.32 -15.08 16 18 C 0.04 0.93 5.28 86.32 0.46 1.39 16 19 C -0.10 -1.39 6.09 30.64 0.19 -1.21 16 20 C -0.13 -2.26 5.32 30.67 0.16 -2.10 16 21 C 0.17 3.05 2.91 45.04 0.13 3.18 16 22 H 0.13 1.57 8.07 -2.39 -0.02 1.55 16 23 N -0.62 -10.21 2.83 -793.74 -2.25 -12.46 16 24 C 0.09 0.64 7.30 86.83 0.63 1.27 16 25 C -0.12 -0.48 7.18 31.65 0.23 -0.25 16 26 C -0.15 -1.90 6.86 30.59 0.21 -1.69 16 27 C 0.50 11.31 7.40 87.90 0.65 11.96 16 28 O -0.58 -20.14 15.08 -3.03 -0.05 -20.19 16 29 C 0.07 1.92 4.18 86.33 0.36 2.28 16 30 H 0.08 1.90 7.75 -2.39 -0.02 1.88 16 31 H 0.11 2.25 7.25 -2.39 -0.02 2.23 16 32 H 0.12 1.96 7.66 -2.39 -0.02 1.94 16 33 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 34 H 0.10 3.60 7.27 -2.39 -0.02 3.58 16 35 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.10 2.01 5.23 -2.39 -0.01 2.00 16 39 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.04 1.10 6.73 -2.38 -0.02 1.08 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.03 0.96 6.75 -2.39 -0.02 0.95 16 51 H 0.07 2.26 7.93 -2.39 -0.02 2.24 16 Total: -1.00 -89.08 401.30 2.74 -86.35 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.92 Total: 11.25 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 8.10 Total: 14.51 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -8.26 Total: -137.70 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.05 Total: -20.19 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -89.08 2.74 -86.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338399974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.887 kcal (2) G-P(sol) polarization free energy of solvation -89.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds