Wall clock time and date at job start Wed Apr 1 2020 06:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36736 * 127.13179 * 2 1 4 4 C 1.50695 * 126.35460 * 359.96379 * 3 2 1 5 5 C 1.53004 * 109.46914 * 270.28636 * 4 3 2 6 6 C 1.53004 * 109.47064 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47034 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99588 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99742 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00120 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99918 * 179.97438 * 9 7 6 12 12 H 1.48511 * 109.46687 * 90.00234 * 11 9 7 13 13 H 1.48494 * 109.47361 * 210.00288 * 11 9 7 14 14 H 1.48502 * 109.47133 * 330.00602 * 11 9 7 15 15 N 1.30297 * 107.29726 * 180.22345 * 3 2 1 16 16 N 1.28522 * 110.05978 * 359.77759 * 15 3 2 17 17 C 1.31221 * 109.85765 * 359.97438 * 16 15 3 18 18 N 1.38575 * 126.47270 * 179.97438 * 17 16 15 19 19 C 1.46902 * 110.99786 * 306.12356 * 18 17 16 20 20 C 1.50236 * 110.28548 * 173.06235 * 19 18 17 21 21 O 1.21283 * 118.63669 * 163.38283 * 20 19 18 22 22 N 1.33904 * 122.72617 * 343.38391 * 20 19 18 23 23 C 1.45717 * 122.45367 * 2.03543 * 22 20 19 24 24 H 1.08994 * 107.91033 * 98.44799 * 23 22 20 25 25 C 1.52426 * 110.97884 * 217.06054 * 23 22 20 26 26 C 1.52966 * 110.01944 * 64.90476 * 25 23 22 27 27 C 1.53074 * 109.12465 * 59.60268 * 26 25 23 28 28 C 1.52899 * 109.21153 * 298.99080 * 27 26 25 29 29 C 1.47561 * 111.00567 * 68.68810 * 18 17 16 30 30 H 1.09003 * 109.99312 * 47.32410 * 29 18 17 31 31 H 1.08996 * 109.47630 * 275.33006 * 1 2 3 32 32 H 1.09002 * 109.46887 * 35.33905 * 1 2 3 33 33 H 1.09002 * 109.46882 * 155.32702 * 1 2 3 34 34 H 1.09003 * 109.46786 * 30.28121 * 4 3 2 35 35 H 1.08991 * 109.47590 * 150.28298 * 4 3 2 36 36 H 1.08991 * 109.47283 * 299.99623 * 5 4 3 37 37 H 1.09002 * 109.47160 * 59.99980 * 5 4 3 38 38 H 1.09003 * 109.46953 * 299.99678 * 6 5 4 39 39 H 1.08991 * 109.47273 * 59.99764 * 6 5 4 40 40 H 0.97004 * 119.99557 * 179.97438 * 10 9 7 41 41 H 1.09001 * 109.33564 * 293.30622 * 19 18 17 42 42 H 1.08997 * 109.33725 * 52.81572 * 19 18 17 43 43 H 0.97004 * 118.77230 * 182.05704 * 22 20 19 44 44 H 1.09000 * 109.37870 * 185.07668 * 25 23 22 45 45 H 1.09003 * 109.37367 * 304.73389 * 25 23 22 46 46 H 1.09002 * 109.52499 * 179.49419 * 26 25 23 47 47 H 1.09000 * 109.52715 * 299.63256 * 26 25 23 48 48 H 1.08996 * 109.51533 * 58.90891 * 27 26 25 49 49 H 1.08993 * 109.51529 * 179.07514 * 27 26 25 50 50 H 1.08992 * 109.41778 * 300.60412 * 28 27 26 51 51 H 1.09001 * 109.41412 * 180.80878 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0008 5 6 1.7110 3.0212 -1.4436 6 6 1.2755 4.4880 -1.4444 7 6 1.1260 4.9668 -2.8655 8 1 1.3224 4.2925 -3.6859 9 6 0.7385 6.2656 -3.1181 10 7 0.4988 7.0865 -2.1189 11 14 0.5539 6.8594 -4.8796 12 1 -0.8371 6.6175 -5.3402 13 1 0.8517 8.3127 -4.9459 14 1 1.5002 6.1198 -5.7530 15 7 3.5161 0.6480 -0.0049 16 7 3.5212 -0.6372 -0.0032 17 6 2.2888 -1.0878 0.0034 18 7 1.8978 -2.4172 0.0065 19 6 2.5193 -3.1513 -1.1038 20 6 2.2222 -4.6195 -0.9885 21 8 2.3898 -5.3245 -1.9611 22 7 1.7800 -5.1819 0.1433 23 6 1.5086 -4.4073 1.3473 24 1 0.4364 -4.2160 1.3883 25 6 1.9066 -5.1838 2.5971 26 6 3.4203 -5.4033 2.6175 27 6 4.1242 -4.0440 2.6087 28 6 3.7490 -3.2913 1.3319 29 6 2.2353 -3.0648 1.2888 30 1 1.9197 -2.4336 2.1195 31 1 -0.3634 0.0955 1.0231 32 1 -0.3633 0.8383 -0.5944 33 1 -0.3633 -0.9339 -0.4290 34 1 0.9077 2.6311 0.5169 35 1 2.6142 3.1372 0.5088 36 1 2.6653 2.9250 -1.9613 37 1 0.9588 2.4190 -1.9531 38 1 0.3210 4.5838 -0.9268 39 1 2.0272 5.0905 -0.9347 40 1 0.2265 8.0004 -2.2967 41 1 2.1263 -2.7768 -2.0490 42 1 3.5982 -2.9985 -1.0784 43 1 1.6351 -6.1409 0.1626 44 1 1.6107 -4.6207 3.4823 45 1 1.4009 -6.1495 2.5991 46 1 3.6969 -5.9511 3.5184 47 1 3.7175 -5.9745 1.7380 48 1 3.8104 -3.4658 3.4778 49 1 5.2035 -4.1928 2.6397 50 1 4.0526 -3.8764 0.4638 51 1 4.2599 -2.3286 1.3154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338866639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:53 Heat of formation + Delta-G solvation = 40.386866 kcal Electronic energy + Delta-G solvation = -31472.697404 eV Core-core repulsion = 27407.894681 eV Total energy + Delta-G solvation = -4064.802723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.09431 -41.46905 -38.58391 -36.69250 -35.33039 -34.47936 -34.38998 -32.47486 -30.66828 -30.05651 -29.81114 -28.02807 -27.16648 -26.49053 -23.88687 -23.49064 -23.21891 -21.61350 -20.85873 -20.84469 -20.15228 -18.94084 -17.75864 -17.49714 -16.81862 -16.34791 -16.28424 -16.14889 -16.00119 -15.69107 -14.82928 -14.57320 -14.35757 -14.24601 -14.01238 -13.86704 -13.57504 -13.55950 -13.33682 -12.92877 -12.86490 -12.54794 -12.42063 -12.29419 -12.03938 -11.79019 -11.64030 -11.53914 -11.26932 -11.13412 -10.89757 -10.84829 -10.75176 -10.61525 -10.50230 -10.29778 -10.11185 -9.81831 -9.56301 -9.50282 -9.24666 -9.16742 -8.76680 -8.38936 -6.04195 -4.06521 1.64179 2.04733 2.24512 2.78611 2.85780 3.26639 3.29961 3.36782 3.40837 3.93310 3.99719 4.27123 4.32906 4.41957 4.48903 4.52528 4.59712 4.66117 4.74298 4.81394 4.86458 4.96569 5.01403 5.07169 5.11783 5.18333 5.21790 5.32169 5.36181 5.38658 5.44034 5.53768 5.56592 5.73248 5.76139 5.81406 5.86097 5.91510 5.97431 5.99783 6.04519 6.37624 6.48468 6.55124 6.69793 6.83338 6.96761 7.04965 7.60464 7.72916 7.78332 7.94778 8.36988 8.75205 8.99976 9.58017 11.06995 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020989 B = 0.002161 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.738381 B =12956.439112 C =13489.893467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.462 5.462 3 C 0.212 3.788 4 C -0.037 4.037 5 C -0.103 4.103 6 C 0.023 3.977 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.057 3.943 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 N -0.290 5.290 16 N -0.303 5.303 17 C 0.317 3.683 18 N -0.450 5.450 19 C 0.044 3.956 20 C 0.533 3.467 21 O -0.546 6.546 22 N -0.709 5.709 23 C 0.153 3.847 24 H 0.080 0.920 25 C -0.127 4.127 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.158 4.158 29 C 0.084 3.916 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.017 0.983 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.402 0.598 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -26.219 14.120 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.155 5.155 3 C -0.055 4.055 4 C -0.077 4.077 5 C -0.142 4.142 6 C -0.014 4.014 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.534 5.534 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 N -0.130 5.130 16 N -0.148 5.148 17 C -0.039 4.039 18 N -0.176 5.176 19 C -0.086 4.086 20 C 0.319 3.681 21 O -0.423 6.423 22 N -0.363 5.363 23 C 0.047 3.953 24 H 0.098 0.902 25 C -0.165 4.165 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.196 4.196 29 C -0.024 4.024 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.134 0.866 42 H 0.118 0.882 43 H 0.238 0.762 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.681 -26.185 13.542 29.488 hybrid contribution -0.990 0.108 -0.813 1.286 sum -0.309 -26.077 12.729 29.020 Atomic orbital electron populations 1.22105 0.74983 1.05616 1.03992 1.46196 1.09025 1.05825 1.54404 1.25427 0.86416 0.92236 1.01397 1.20408 1.02206 0.83458 1.01651 1.21662 1.01095 1.00162 0.91242 1.19099 0.96583 0.88415 0.97311 1.21211 1.45854 0.96437 0.92434 0.92724 1.25006 0.95432 0.96887 0.97049 1.69956 1.46841 1.05984 1.30640 0.86604 0.78402 0.77978 0.85099 1.20690 1.21169 1.19849 1.74091 1.17516 1.02101 1.19297 1.74503 1.16695 1.04330 1.19245 1.21986 0.86456 0.87426 1.08071 1.59421 1.57365 0.96369 1.04407 1.22372 1.01637 0.89434 0.95154 1.19908 0.75890 0.89826 0.82470 1.90805 1.52807 1.62509 1.36144 1.45605 1.67542 1.11712 1.11404 1.20765 0.99756 0.89887 0.84898 0.90195 1.21751 0.97219 1.00781 0.96779 1.21568 0.94437 0.97636 1.02315 1.21459 1.00605 0.95648 0.97452 1.22353 0.95198 1.03085 0.99009 1.22239 0.95381 0.94172 0.90649 0.87699 0.90226 0.88556 0.88684 0.90207 0.88294 0.92376 0.93541 0.96483 0.96125 0.92960 0.86578 0.88249 0.76157 0.89859 0.90675 0.91437 0.91696 0.91654 0.91405 0.91434 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.88 59.85 0.65 1.34 16 2 N -0.46 -5.93 3.21 -121.46 -0.39 -6.32 16 3 C 0.21 3.29 7.32 -154.02 -1.13 2.16 16 4 C -0.04 -0.58 5.52 -27.88 -0.15 -0.74 16 5 C -0.10 -1.99 5.14 -26.73 -0.14 -2.13 16 6 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 11 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 N -0.29 -5.07 12.18 32.99 0.40 -4.66 16 16 N -0.30 -4.75 10.00 30.31 0.30 -4.44 16 17 C 0.32 4.10 6.29 -318.88 -2.01 2.09 16 18 N -0.45 -4.49 4.70 -168.14 -0.79 -5.28 16 19 C 0.04 0.47 4.87 -5.20 -0.03 0.45 16 20 C 0.53 5.66 6.87 -11.60 -0.08 5.58 16 21 O -0.55 -7.86 17.83 5.55 0.10 -7.76 16 22 N -0.71 -5.11 4.71 -55.09 -0.26 -5.37 16 23 C 0.15 0.85 3.12 -68.77 -0.21 0.64 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 25 C -0.13 -0.47 5.55 -27.04 -0.15 -0.62 16 26 C -0.12 -0.59 5.84 -26.71 -0.16 -0.74 16 27 C -0.11 -0.72 5.92 -26.74 -0.16 -0.88 16 28 C -0.16 -1.34 4.19 -26.72 -0.11 -1.45 16 29 C 0.08 0.65 2.37 -67.41 -0.16 0.49 16 30 H 0.10 0.80 8.04 -51.93 -0.42 0.38 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.90 8.06 -51.93 -0.42 0.48 16 33 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 34 H 0.08 1.09 7.98 -51.93 -0.41 0.67 16 35 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.10 1.16 6.29 -51.93 -0.33 0.83 16 43 H 0.40 2.41 8.75 -40.82 -0.36 2.05 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.38 7.86 -51.93 -0.41 -0.03 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.64 5.35 -51.93 -0.28 0.36 16 51 H 0.09 1.05 6.32 -51.93 -0.33 0.72 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -33.87 398.87 -11.70 -45.57 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -8.41 Total: -2.06 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -4.38 Total: -6.58 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.00 Total: -51.59 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.10 Total: -7.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.87 -11.70 -45.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338866639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.955 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds