Wall clock time and date at job start Wed Apr 1 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36736 * 127.13179 * 2 1 4 4 C 1.50695 * 126.35460 * 359.96379 * 3 2 1 5 5 C 1.53004 * 109.46914 * 270.28636 * 4 3 2 6 6 C 1.53004 * 109.47064 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47034 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99588 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99742 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00120 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99918 * 179.97438 * 9 7 6 12 12 H 1.48511 * 109.46687 * 90.00234 * 11 9 7 13 13 H 1.48494 * 109.47361 * 210.00288 * 11 9 7 14 14 H 1.48502 * 109.47133 * 330.00602 * 11 9 7 15 15 N 1.30297 * 107.29726 * 180.22345 * 3 2 1 16 16 N 1.28522 * 110.05978 * 359.77759 * 15 3 2 17 17 C 1.31221 * 109.85765 * 359.97438 * 16 15 3 18 18 N 1.38575 * 126.47270 * 179.97438 * 17 16 15 19 19 C 1.46902 * 110.99786 * 306.12356 * 18 17 16 20 20 C 1.50236 * 110.28548 * 173.06235 * 19 18 17 21 21 O 1.21283 * 118.63669 * 163.38283 * 20 19 18 22 22 N 1.33904 * 122.72617 * 343.38391 * 20 19 18 23 23 C 1.45717 * 122.45367 * 2.03543 * 22 20 19 24 24 H 1.08994 * 107.91033 * 98.44799 * 23 22 20 25 25 C 1.52426 * 110.97884 * 217.06054 * 23 22 20 26 26 C 1.52966 * 110.01944 * 64.90476 * 25 23 22 27 27 C 1.53074 * 109.12465 * 59.60268 * 26 25 23 28 28 C 1.52899 * 109.21153 * 298.99080 * 27 26 25 29 29 C 1.47561 * 111.00567 * 68.68810 * 18 17 16 30 30 H 1.09003 * 109.99312 * 47.32410 * 29 18 17 31 31 H 1.08996 * 109.47630 * 275.33006 * 1 2 3 32 32 H 1.09002 * 109.46887 * 35.33905 * 1 2 3 33 33 H 1.09002 * 109.46882 * 155.32702 * 1 2 3 34 34 H 1.09003 * 109.46786 * 30.28121 * 4 3 2 35 35 H 1.08991 * 109.47590 * 150.28298 * 4 3 2 36 36 H 1.08991 * 109.47283 * 299.99623 * 5 4 3 37 37 H 1.09002 * 109.47160 * 59.99980 * 5 4 3 38 38 H 1.09003 * 109.46953 * 299.99678 * 6 5 4 39 39 H 1.08991 * 109.47273 * 59.99764 * 6 5 4 40 40 H 0.97004 * 119.99557 * 179.97438 * 10 9 7 41 41 H 1.09001 * 109.33564 * 293.30622 * 19 18 17 42 42 H 1.08997 * 109.33725 * 52.81572 * 19 18 17 43 43 H 0.97004 * 118.77230 * 182.05704 * 22 20 19 44 44 H 1.09000 * 109.37870 * 185.07668 * 25 23 22 45 45 H 1.09003 * 109.37367 * 304.73389 * 25 23 22 46 46 H 1.09002 * 109.52499 * 179.49419 * 26 25 23 47 47 H 1.09000 * 109.52715 * 299.63256 * 26 25 23 48 48 H 1.08996 * 109.51533 * 58.90891 * 27 26 25 49 49 H 1.08993 * 109.51529 * 179.07514 * 27 26 25 50 50 H 1.08992 * 109.41778 * 300.60412 * 28 27 26 51 51 H 1.09001 * 109.41412 * 180.80878 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0008 5 6 1.7110 3.0212 -1.4436 6 6 1.2755 4.4880 -1.4444 7 6 1.1260 4.9668 -2.8655 8 1 1.3224 4.2925 -3.6859 9 6 0.7385 6.2656 -3.1181 10 7 0.4988 7.0865 -2.1189 11 14 0.5539 6.8594 -4.8796 12 1 -0.8371 6.6175 -5.3402 13 1 0.8517 8.3127 -4.9459 14 1 1.5002 6.1198 -5.7530 15 7 3.5161 0.6480 -0.0049 16 7 3.5212 -0.6372 -0.0032 17 6 2.2888 -1.0878 0.0034 18 7 1.8978 -2.4172 0.0065 19 6 2.5193 -3.1513 -1.1038 20 6 2.2222 -4.6195 -0.9885 21 8 2.3898 -5.3245 -1.9611 22 7 1.7800 -5.1819 0.1433 23 6 1.5086 -4.4073 1.3473 24 1 0.4364 -4.2160 1.3883 25 6 1.9066 -5.1838 2.5971 26 6 3.4203 -5.4033 2.6175 27 6 4.1242 -4.0440 2.6087 28 6 3.7490 -3.2913 1.3319 29 6 2.2353 -3.0648 1.2888 30 1 1.9197 -2.4336 2.1195 31 1 -0.3634 0.0955 1.0231 32 1 -0.3633 0.8383 -0.5944 33 1 -0.3633 -0.9339 -0.4290 34 1 0.9077 2.6311 0.5169 35 1 2.6142 3.1372 0.5088 36 1 2.6653 2.9250 -1.9613 37 1 0.9588 2.4190 -1.9531 38 1 0.3210 4.5838 -0.9268 39 1 2.0272 5.0905 -0.9347 40 1 0.2265 8.0004 -2.2967 41 1 2.1263 -2.7768 -2.0490 42 1 3.5982 -2.9985 -1.0784 43 1 1.6351 -6.1409 0.1626 44 1 1.6107 -4.6207 3.4823 45 1 1.4009 -6.1495 2.5991 46 1 3.6969 -5.9511 3.5184 47 1 3.7175 -5.9745 1.7380 48 1 3.8104 -3.4658 3.4778 49 1 5.2035 -4.1928 2.6397 50 1 4.0526 -3.8764 0.4638 51 1 4.2599 -2.3286 1.3154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338866639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:52 Heat of formation + Delta-G solvation = 19.952098 kcal Electronic energy + Delta-G solvation = -31473.583522 eV Core-core repulsion = 27407.894681 eV Total energy + Delta-G solvation = -4065.688841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.17921 -42.23309 -39.41142 -37.46613 -36.70296 -35.79752 -35.08189 -34.32567 -31.63838 -30.94625 -30.63965 -29.17474 -28.35704 -27.49553 -25.60925 -24.20034 -23.81121 -22.68816 -22.24355 -21.60910 -21.42521 -19.64274 -18.66437 -18.45583 -18.25492 -17.66311 -17.05115 -16.99948 -16.94247 -16.55731 -16.49913 -15.71637 -15.55561 -15.20866 -14.91973 -14.70068 -14.41257 -14.36113 -14.24305 -13.99755 -13.84376 -13.59375 -13.50498 -13.25184 -13.21498 -12.96571 -12.74237 -12.68141 -12.59842 -12.44557 -12.30901 -11.93627 -11.70371 -11.62270 -11.50693 -11.42455 -11.32464 -11.25202 -11.13006 -11.01540 -10.53158 -10.30064 -10.10361 -9.90603 -8.19189 -6.28740 0.57419 1.08842 1.37384 1.40154 1.41485 1.52117 1.66333 2.11425 2.39882 2.42164 3.14531 3.22538 3.30144 3.42789 3.63721 3.73087 3.79853 3.87515 4.01114 4.03766 4.08620 4.14744 4.20924 4.31811 4.36553 4.39697 4.42824 4.47987 4.57159 4.60462 4.66863 4.69024 4.82973 4.94199 5.03524 5.04809 5.07432 5.10002 5.10094 5.18165 5.22378 5.27458 5.29813 5.41907 5.44939 5.53123 5.75893 5.76468 5.87066 6.04949 6.09972 6.26917 6.87260 7.02210 7.39984 7.60772 8.92056 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020989 B = 0.002161 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.738381 B =12956.439112 C =13489.893467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.458 5.458 3 C 0.204 3.796 4 C -0.024 4.024 5 C -0.085 4.085 6 C 0.028 3.972 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.004 3.996 10 N -0.928 5.928 11 Si 0.957 3.043 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.270 1.270 15 N -0.326 5.326 16 N -0.331 5.331 17 C 0.332 3.668 18 N -0.438 5.438 19 C 0.047 3.953 20 C 0.538 3.462 21 O -0.589 6.589 22 N -0.692 5.692 23 C 0.155 3.845 24 H 0.101 0.899 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.111 4.111 28 C -0.153 4.153 29 C 0.081 3.919 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.053 0.947 38 H 0.008 0.992 39 H -0.003 1.003 40 H 0.264 0.736 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.412 0.588 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.052 0.948 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 -28.084 15.346 32.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.149 5.149 3 C -0.065 4.065 4 C -0.064 4.064 5 C -0.124 4.124 6 C -0.010 4.010 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.194 4.194 10 N -0.568 5.568 11 Si 0.782 3.218 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.195 1.195 15 N -0.167 5.167 16 N -0.175 5.175 17 C -0.025 4.025 18 N -0.164 5.164 19 C -0.083 4.083 20 C 0.324 3.676 21 O -0.469 6.469 22 N -0.345 5.345 23 C 0.051 3.949 24 H 0.118 0.882 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.149 4.149 28 C -0.192 4.192 29 C -0.026 4.026 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.015 0.985 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.250 0.750 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.092 0.908 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.298 -28.072 14.814 31.768 hybrid contribution -0.369 0.648 -1.131 1.355 sum -1.667 -27.424 13.683 30.693 Atomic orbital electron populations 1.22441 0.72539 1.06415 1.05899 1.46358 1.10320 1.04853 1.53385 1.25157 0.86516 0.92524 1.02260 1.20161 1.03467 0.83683 0.99054 1.21348 0.99983 0.97191 0.93910 1.18980 0.95391 0.91128 0.95457 1.21652 1.45703 0.96871 0.93904 0.92901 1.25857 0.95113 0.97134 1.01290 1.70064 1.47636 1.06372 1.32756 0.85563 0.78771 0.77423 0.79999 1.19556 1.20724 1.19456 1.74006 1.19048 1.03193 1.20434 1.74465 1.18441 1.03746 1.20826 1.22259 0.85888 0.88517 1.05860 1.59640 1.56542 0.94953 1.05288 1.22240 1.00853 0.90039 0.95172 1.19736 0.75791 0.89247 0.82834 1.90786 1.55065 1.63158 1.37912 1.45541 1.65629 1.12404 1.10886 1.20973 1.00493 0.88564 0.84908 0.88155 1.21776 0.96255 1.01789 0.95987 1.21551 0.95245 0.96329 1.02552 1.21452 1.00536 0.96565 0.96348 1.22248 0.95622 1.01560 0.99739 1.22429 0.95086 0.95469 0.89608 0.86697 0.87535 0.88759 0.87137 0.87694 0.88716 0.94227 0.92841 0.97379 0.98465 0.92735 0.87512 0.89605 0.74971 0.88035 0.88506 0.89935 0.92818 0.90797 0.92127 0.92895 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.88 127.77 1.39 2.45 16 2 N -0.46 -11.17 3.21 -538.18 -1.73 -12.90 16 3 C 0.20 6.27 7.32 137.64 1.01 7.27 16 4 C -0.02 -0.74 5.52 29.85 0.16 -0.58 16 5 C -0.09 -3.35 5.14 30.60 0.16 -3.19 16 6 C 0.03 1.37 4.97 29.85 0.15 1.52 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.11 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 9 C 0.00 0.24 5.46 84.65 0.46 0.70 16 10 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 11 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 N -0.33 -11.68 12.18 -49.54 -0.60 -12.28 16 16 N -0.33 -10.60 10.00 -58.01 -0.58 -11.18 16 17 C 0.33 8.41 6.29 260.12 1.64 10.04 16 18 N -0.44 -8.24 4.70 -685.88 -3.23 -11.47 16 19 C 0.05 1.03 4.87 85.41 0.42 1.44 16 20 C 0.54 11.15 6.87 87.65 0.60 11.76 16 21 O -0.59 -17.10 17.83 -3.04 -0.05 -17.16 16 22 N -0.69 -8.52 4.71 -447.09 -2.10 -10.62 16 23 C 0.16 1.23 3.12 44.87 0.14 1.37 16 24 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 25 C -0.12 -0.39 5.55 30.39 0.17 -0.22 16 26 C -0.12 -0.82 5.84 30.61 0.18 -0.64 16 27 C -0.11 -1.25 5.92 30.59 0.18 -1.07 16 28 C -0.15 -2.55 4.19 30.60 0.13 -2.42 16 29 C 0.08 1.10 2.37 44.75 0.11 1.21 16 30 H 0.12 1.42 8.04 -2.39 -0.02 1.40 16 31 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.55 8.06 -2.39 -0.02 1.53 16 33 H 0.11 1.39 8.11 -2.39 -0.02 1.37 16 34 H 0.10 2.70 7.98 -2.39 -0.02 2.68 16 35 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.09 2.12 6.29 -2.39 -0.02 2.11 16 43 H 0.41 3.90 8.75 -92.71 -0.81 3.09 16 44 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.05 0.51 7.86 -2.39 -0.02 0.49 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.05 1.03 5.35 -2.39 -0.01 1.01 16 51 H 0.06 1.48 6.32 -2.39 -0.02 1.47 16 Total: -1.00 -75.81 398.87 1.26 -74.55 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.13 Total: 10.22 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 7.12 Total: -0.47 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -7.96 Total: -113.12 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.05 Total: -17.16 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -75.81 1.26 -74.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338866639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.497 kcal (2) G-P(sol) polarization free energy of solvation -75.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds