Wall clock time and date at job start Wed Apr 1 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00017 * 2 1 4 4 N 1.46495 * 109.47696 * 124.99836 * 3 2 1 5 5 C 1.36742 * 127.13926 * 270.15617 * 4 3 2 6 6 C 1.50700 * 126.34300 * 359.96051 * 5 4 3 7 7 C 1.53004 * 109.46641 * 270.28704 * 6 5 4 8 8 C 1.50706 * 109.46818 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99984 * 0.02562 * 8 7 6 10 10 C 1.37869 * 119.99789 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00299 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00065 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47228 * 59.99728 * 12 10 8 14 14 H 1.48497 * 109.47527 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47004 * 299.99947 * 12 10 8 16 16 N 1.30292 * 107.30093 * 180.22212 * 5 4 3 17 17 N 1.28523 * 110.06234 * 359.77345 * 16 5 4 18 18 C 1.31216 * 109.85641 * 359.97438 * 17 16 5 19 19 N 1.38586 * 126.47210 * 179.97438 * 18 17 16 20 20 C 1.46199 * 111.00069 * 255.01643 * 19 18 17 21 21 C 1.51269 * 109.09961 * 144.77463 * 20 19 18 22 22 C 1.54180 * 109.77842 * 92.30971 * 21 20 19 23 23 N 1.47610 * 111.08910 * 320.23934 * 22 21 20 24 24 C 1.34784 * 118.74528 * 138.19959 * 23 22 21 25 25 C 1.50694 * 119.99988 * 179.73180 * 24 23 22 26 26 O 1.21283 * 119.99649 * 359.73298 * 24 23 22 27 27 C 1.44878 * 122.50802 * 317.92113 * 23 22 21 28 28 C 1.41450 * 110.99530 * 123.98510 * 19 18 17 29 29 H 1.07999 * 119.99879 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99634 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.00200 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47131 * 4.99489 * 3 2 1 33 33 H 1.09008 * 109.47149 * 245.00296 * 3 2 1 34 34 H 1.08992 * 109.47630 * 30.28902 * 6 5 4 35 35 H 1.08997 * 109.46866 * 150.29318 * 6 5 4 36 36 H 1.09001 * 109.47100 * 300.00275 * 7 6 5 37 37 H 1.08990 * 109.47112 * 60.00294 * 7 6 5 38 38 H 0.96996 * 119.99840 * 180.02562 * 11 10 8 39 39 H 1.09004 * 109.53002 * 264.66455 * 20 19 18 40 40 H 1.09000 * 109.53177 * 24.88309 * 20 19 18 41 41 H 1.09001 * 109.44061 * 212.45342 * 21 20 19 42 42 H 1.08997 * 109.44536 * 332.38837 * 21 20 19 43 43 H 1.08994 * 109.31134 * 199.77244 * 22 21 20 44 44 H 1.09004 * 109.12685 * 80.58691 * 22 21 20 45 45 H 1.09002 * 109.47054 * 60.00213 * 25 24 23 46 46 H 1.09005 * 109.47144 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47224 * 299.99701 * 25 24 23 48 48 H 1.09003 * 109.43581 * 210.07048 * 27 23 22 49 49 H 1.08993 * 109.43701 * 329.94426 * 27 23 22 50 50 H 1.08991 * 109.38619 * 71.52946 * 28 19 18 51 51 H 1.08997 * 109.29984 * 311.78487 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.7438 1.7910 2.3950 6 6 1.4458 2.3721 2.8936 7 6 1.4429 3.8848 2.6643 8 6 0.1451 4.4660 3.1635 9 1 -0.6025 3.8211 3.6009 10 6 -0.0871 5.8213 3.0627 11 7 0.8240 6.6070 2.5314 12 14 -1.6960 6.5417 3.6808 13 1 -1.8394 6.2600 5.1317 14 1 -1.6988 8.0099 3.4584 15 1 -2.8291 5.9276 2.9430 16 7 3.8375 1.6379 3.0863 17 7 4.7530 1.1132 2.3525 18 6 4.2884 0.9011 1.1438 19 7 4.9834 0.3497 0.0792 20 6 5.3573 1.3774 -0.8911 21 6 6.7066 1.0331 -1.4818 22 6 6.5168 0.2074 -2.7700 23 7 5.4187 -0.7674 -2.6191 24 6 4.5610 -0.9413 -3.6442 25 6 3.4333 -1.9335 -3.5229 26 8 4.6968 -0.2993 -4.6641 27 6 5.2311 -1.5485 -1.4135 28 6 4.3090 -0.7827 -0.4343 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4026 -0.9315 34 1 0.6141 1.9210 2.3526 35 1 1.3409 2.1659 3.9588 36 1 2.2747 4.3359 3.2054 37 1 1.5479 4.0910 1.5992 38 1 0.6606 7.5605 2.4608 39 1 4.6114 1.4177 -1.6849 40 1 5.4137 2.3454 -0.3931 41 1 7.2454 1.9513 -1.7153 42 1 7.2797 0.4492 -0.7616 43 1 7.4398 -0.3268 -2.9950 44 1 6.2853 0.8810 -3.5951 45 1 2.7916 -1.6540 -2.6873 46 1 2.8505 -1.9356 -4.4441 47 1 3.8422 -2.9290 -3.3500 48 1 4.7748 -2.5051 -1.6684 49 1 6.1974 -1.7230 -0.9404 50 1 3.4104 -0.4608 -0.9605 51 1 4.0302 -1.4401 0.3892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340297800.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:56 Heat of formation + Delta-G solvation = 60.698885 kcal Electronic energy + Delta-G solvation = -32223.524862 eV Core-core repulsion = 28159.602934 eV Total energy + Delta-G solvation = -4063.921928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.14255 -41.48474 -39.54018 -37.34577 -36.50662 -35.80141 -34.37026 -33.92723 -33.37158 -30.83370 -30.62518 -28.93330 -27.89902 -27.21057 -27.02267 -23.96690 -23.66758 -22.86733 -22.08948 -21.67894 -20.81888 -19.97660 -18.87855 -18.55397 -17.94985 -17.61685 -17.36469 -17.20949 -16.66124 -16.55519 -16.26387 -15.87666 -15.49484 -15.11553 -15.00695 -14.85190 -14.65526 -14.45878 -14.28308 -13.66985 -13.60034 -13.52560 -13.33887 -13.23612 -13.14264 -12.85358 -12.79999 -12.76950 -12.64452 -12.55788 -12.45062 -12.17093 -12.03125 -11.96337 -11.81963 -11.47884 -11.32178 -11.13606 -10.89130 -10.63084 -10.57454 -10.07242 -9.89512 -9.67703 -8.22267 -6.35071 0.67172 0.88760 1.42032 1.45224 1.52786 1.55332 1.60060 1.78688 2.00298 2.29092 2.40726 3.12135 3.36895 3.48326 3.56067 3.67954 3.70017 3.74722 3.85237 3.95774 3.97327 4.09989 4.13166 4.28457 4.29596 4.34858 4.45828 4.47058 4.53008 4.59531 4.62532 4.67770 4.76985 4.78151 4.79586 4.87740 4.91253 4.94130 5.03460 5.11355 5.15845 5.39358 5.42137 5.48066 5.48333 5.55434 5.61417 5.75518 5.89453 6.12482 6.19068 6.35835 6.80642 7.12428 7.35428 7.75286 8.89550 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.002838 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.037249 B = 9865.297978 C =10246.537740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.202 4.202 3 C 0.128 3.872 4 N -0.486 5.486 5 C 0.207 3.793 6 C -0.015 4.015 7 C 0.045 3.955 8 C -0.539 4.539 9 H 0.073 0.927 10 C 0.002 3.998 11 N -0.935 5.935 12 Si 0.967 3.033 13 H -0.267 1.267 14 H -0.288 1.288 15 H -0.260 1.260 16 N -0.334 5.334 17 N -0.308 5.308 18 C 0.345 3.655 19 N -0.452 5.452 20 C 0.078 3.922 21 C -0.118 4.118 22 C 0.113 3.887 23 N -0.608 5.608 24 C 0.499 3.501 25 C -0.172 4.172 26 O -0.597 6.597 27 C 0.118 3.882 28 C 0.037 3.963 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.088 0.912 36 H -0.018 1.018 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.120 0.880 48 H 0.130 0.870 49 H 0.102 0.898 50 H 0.051 0.949 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -22.616 -13.204 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.221 4.221 3 C 0.006 3.994 4 N -0.183 5.183 5 C -0.062 4.062 6 C -0.055 4.055 7 C 0.007 3.993 8 C -0.577 4.577 9 H 0.091 0.909 10 C -0.196 4.196 11 N -0.574 5.574 12 Si 0.791 3.209 13 H -0.192 1.192 14 H -0.214 1.214 15 H -0.184 1.184 16 N -0.174 5.174 17 N -0.149 5.149 18 C -0.011 4.011 19 N -0.177 5.177 20 C -0.049 4.049 21 C -0.156 4.156 22 C -0.009 4.009 23 N -0.340 5.340 24 C 0.290 3.710 25 C -0.231 4.231 26 O -0.478 6.478 27 C -0.006 4.006 28 C -0.091 4.091 29 H 0.116 0.884 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.001 0.999 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.105 0.895 47 H 0.138 0.862 48 H 0.148 0.852 49 H 0.120 0.880 50 H 0.069 0.931 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.357 -22.265 -12.488 26.308 hybrid contribution -1.864 1.584 -0.871 2.597 sum 4.493 -20.680 -13.359 25.027 Atomic orbital electron populations 1.24292 0.95253 1.03921 0.93865 1.23062 0.96707 0.96567 1.05719 1.21214 0.92123 0.99532 0.86539 1.47470 1.12775 1.46615 1.11409 1.25252 0.99311 0.99155 0.82483 1.20127 0.87578 0.96055 1.01744 1.18812 0.96055 0.89613 0.94858 1.21550 1.02467 0.93342 1.40373 0.90852 1.25990 1.00631 0.97785 0.95214 1.70118 1.36444 1.05019 1.45870 0.85468 0.79263 0.76870 0.79281 1.19168 1.21406 1.18444 1.74108 0.98130 1.18341 1.26787 1.74312 1.23123 1.17156 1.00262 1.22992 0.81606 1.01639 0.94878 1.55559 1.43804 1.08791 1.09512 1.21668 0.98724 0.92229 0.92234 1.21836 0.95450 1.01617 0.96713 1.21931 0.89898 0.91432 0.97686 1.48026 1.29446 1.40896 1.15632 1.21676 0.83534 0.83578 0.82177 1.22048 0.96000 0.99203 1.05810 1.90703 1.75171 1.50429 1.31528 1.21895 1.01827 0.93947 0.82887 1.22448 0.96336 0.90825 0.99532 0.88374 0.84798 0.84771 0.88897 0.88276 0.88904 0.89366 0.99941 0.99101 0.92811 0.93410 0.92905 0.88660 0.88997 0.89702 0.91129 0.87866 0.89490 0.86210 0.85228 0.87994 0.93120 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.20 -3.49 8.73 25.65 0.22 -3.27 16 3 C 0.13 3.11 5.45 85.63 0.47 3.58 16 4 N -0.49 -15.40 2.79 -518.89 -1.45 -16.85 16 5 C 0.21 8.18 7.32 137.64 1.01 9.18 16 6 C -0.02 -0.62 5.36 29.85 0.16 -0.46 16 7 C 0.04 2.33 4.96 29.85 0.15 2.48 16 8 C -0.54 -29.27 9.11 25.60 0.23 -29.03 16 9 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 10 C 0.00 0.11 5.46 84.65 0.46 0.57 16 11 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 12 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 14 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 16 N -0.33 -14.69 12.18 -49.54 -0.60 -15.30 16 17 N -0.31 -12.32 12.23 -58.00 -0.71 -13.03 16 18 C 0.34 10.85 6.23 260.11 1.62 12.47 16 19 N -0.45 -10.06 3.89 -720.61 -2.80 -12.87 16 20 C 0.08 1.71 4.85 85.87 0.42 2.12 16 21 C -0.12 -1.87 5.79 30.43 0.18 -1.70 16 22 C 0.11 1.69 6.18 86.57 0.54 2.23 16 23 N -0.61 -8.24 2.17 -817.15 -1.78 -10.02 16 24 C 0.50 8.46 7.74 87.65 0.68 9.13 16 25 C -0.17 -1.36 8.81 71.23 0.63 -0.73 16 26 O -0.60 -16.24 16.38 -3.04 -0.05 -16.29 16 27 C 0.12 1.02 5.30 87.29 0.46 1.48 16 28 C 0.04 0.53 3.97 87.91 0.35 0.88 16 29 H 0.10 1.74 7.84 -2.91 -0.02 1.71 16 30 H 0.13 1.36 8.06 -2.91 -0.02 1.33 16 31 H 0.13 1.79 6.26 -2.91 -0.02 1.77 16 32 H 0.09 2.61 7.55 -2.39 -0.02 2.60 16 33 H 0.10 2.19 6.05 -2.38 -0.01 2.17 16 34 H 0.09 3.25 7.95 -2.39 -0.02 3.23 16 35 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 36 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.05 1.06 6.45 -2.38 -0.02 1.04 16 40 H 0.05 1.46 7.69 -2.39 -0.02 1.45 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.44 7.98 -2.39 -0.02 1.42 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.38 6.99 -2.38 -0.02 1.36 16 45 H 0.10 0.52 7.21 -2.39 -0.02 0.51 16 46 H 0.09 0.83 8.12 -2.38 -0.02 0.81 16 47 H 0.12 0.24 7.31 -2.39 -0.02 0.22 16 48 H 0.13 0.24 6.24 -2.39 -0.01 0.23 16 49 H 0.10 0.85 8.11 -2.39 -0.02 0.83 16 50 H 0.05 0.70 3.67 -2.39 -0.01 0.69 16 51 H 0.10 1.37 7.83 -2.39 -0.02 1.35 16 Total: -1.00 -80.12 401.43 4.39 -75.73 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.93 Total: 12.16 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 8.54 Total: 7.82 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -7.06 Total: -124.26 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.05 Total: -16.29 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -80.12 4.39 -75.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340297800.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.428 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds