Wall clock time and date at job start Wed Apr 1 2020 04:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.47085 * 2 1 4 4 C 1.36731 * 127.13508 * 90.02603 * 3 2 1 5 5 C 1.50701 * 126.34992 * 0.02562 * 4 3 2 6 6 C 1.52997 * 109.47212 * 269.71296 * 5 4 3 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47592 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00057 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00356 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00113 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99923 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47375 * 89.99678 * 12 10 8 14 14 H 1.48508 * 109.47196 * 209.99673 * 12 10 8 15 15 H 1.48504 * 109.47051 * 329.99297 * 12 10 8 16 16 N 1.30300 * 107.30436 * 179.75758 * 4 3 2 17 17 N 1.28528 * 110.05364 * 0.23802 * 16 4 3 18 18 C 1.31219 * 109.85696 * 0.02562 * 17 16 4 19 19 N 1.38579 * 126.47079 * 179.97438 * 18 17 16 20 20 C 1.47994 * 110.99785 * 120.80742 * 19 18 17 21 21 C 1.55196 * 104.98204 * 213.95846 * 20 19 18 22 22 C 1.53571 * 101.47668 * 35.47953 * 21 20 19 23 23 C 1.52911 * 111.97595 * 203.78546 * 22 21 20 24 24 N 1.47151 * 105.12061 * 263.07690 * 23 22 21 25 25 C 1.34611 * 111.30069 * 344.39367 * 24 23 22 26 26 O 1.21280 * 124.94418 * 180.36080 * 25 24 23 27 27 C 1.51639 * 110.11377 * 0.33487 * 25 24 23 28 28 C 1.47843 * 111.00062 * 0.03350 * 19 18 17 29 29 H 1.09001 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46725 * 299.99868 * 1 2 3 31 31 H 1.08997 * 109.47264 * 60.00071 * 1 2 3 32 32 H 1.09002 * 109.47213 * 240.00034 * 2 1 3 33 33 H 1.08997 * 109.47264 * 119.99929 * 2 1 3 34 34 H 1.09002 * 109.47060 * 29.71351 * 5 4 3 35 35 H 1.09001 * 109.47380 * 149.71439 * 5 4 3 36 36 H 1.09002 * 109.47153 * 299.99998 * 6 5 4 37 37 H 1.08998 * 109.47533 * 59.99628 * 6 5 4 38 38 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 39 39 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 40 40 H 0.97008 * 120.00167 * 179.97438 * 11 10 8 41 41 H 1.08998 * 110.33524 * 332.83585 * 20 19 18 42 42 H 1.09000 * 110.33669 * 95.08356 * 20 19 18 43 43 H 1.08998 * 111.02147 * 277.42907 * 21 20 19 44 44 H 1.09000 * 111.01702 * 153.52364 * 21 20 19 45 45 H 1.08997 * 110.31635 * 21.98707 * 23 22 21 46 46 H 1.09006 * 110.31750 * 144.06673 * 23 22 21 47 47 H 0.96999 * 124.34865 * 164.36642 * 24 23 22 48 48 H 1.09006 * 110.55770 * 256.38024 * 27 25 24 49 49 H 1.09007 * 110.55222 * 133.55832 * 27 25 24 50 50 H 1.09001 * 110.00153 * 243.64518 * 28 19 18 51 51 H 1.09005 * 109.99922 * 4.98394 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2940 2.1594 1.0900 5 6 2.1523 1.7551 2.5349 6 6 0.7465 2.1051 3.0270 7 6 0.6025 1.6941 4.4936 8 6 -0.7820 2.0394 4.9785 9 1 -1.4886 2.5051 4.3075 10 6 -1.1469 1.7600 6.2783 11 7 -2.3549 2.0618 6.7016 12 14 0.0750 0.9539 7.4387 13 1 0.8531 2.0030 8.1452 14 1 -0.6567 0.1271 8.4319 15 1 1.0001 0.0904 6.6616 16 7 2.7073 3.3133 0.6480 17 7 2.7068 3.3188 -0.6373 18 6 2.2892 2.1593 -1.0878 19 7 2.1542 1.7923 -2.4172 20 6 2.9902 0.6115 -2.7290 21 6 3.4540 0.8240 -4.1947 22 6 3.6340 2.3485 -4.2403 23 6 3.5212 2.8957 -5.6636 24 7 4.9086 3.0223 -6.1373 25 6 5.7820 2.9598 -5.1149 26 8 6.9869 3.0435 -5.2245 27 6 5.0400 2.7699 -3.8061 28 6 2.5502 2.8981 -3.3150 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3133 0.6811 2.6291 35 1 2.8903 2.2872 3.1352 36 1 0.5855 3.1790 2.9327 37 1 0.0085 1.5731 2.4267 38 1 0.7633 0.6201 4.5874 39 1 1.3405 2.2259 5.0941 40 1 -2.6118 1.8648 7.6161 41 1 3.8509 0.5700 -2.0615 42 1 2.4013 -0.3020 -2.6466 43 1 2.6874 0.4996 -4.8983 44 1 4.3980 0.3129 -4.3840 45 1 2.9683 2.1994 -6.2941 46 1 3.0317 3.8696 -5.6570 47 1 5.1613 3.1359 -7.0669 48 1 5.0038 3.7053 -3.2475 49 1 5.5081 1.9856 -3.2112 50 1 1.6923 3.2282 -3.9008 51 1 2.9452 3.7293 -2.7309 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340973521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:05 Heat of formation + Delta-G solvation = 48.282504 kcal Electronic energy + Delta-G solvation = -31083.057251 eV Core-core repulsion = 27018.596908 eV Total energy + Delta-G solvation = -4064.460342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.04173 -41.43535 -39.00034 -36.50127 -35.94491 -34.82504 -32.98359 -32.21535 -30.71552 -30.55296 -29.58001 -28.76208 -27.19838 -25.74218 -24.38235 -23.62038 -22.74746 -21.19210 -21.08512 -20.67009 -20.19202 -19.83217 -17.88606 -17.43182 -16.72523 -16.50274 -16.43239 -16.16864 -15.61717 -15.45531 -14.77511 -14.53413 -14.32930 -14.16744 -14.13685 -14.00087 -13.67176 -13.50963 -13.30927 -13.10430 -12.86854 -12.73575 -12.44824 -12.38593 -12.16220 -11.93786 -11.84577 -11.58284 -11.54434 -11.34972 -11.15179 -11.08584 -10.83690 -10.62003 -10.27300 -10.16276 -9.99247 -9.88893 -9.78174 -9.62310 -9.60504 -9.22922 -8.56036 -8.25612 -6.06109 -4.04594 1.77948 2.16149 2.17579 2.85875 2.91180 3.29230 3.36644 3.38203 3.38917 3.61161 3.68706 3.82475 4.13467 4.32868 4.41191 4.42766 4.51633 4.60088 4.77149 4.82152 4.84484 4.88370 4.95130 4.97985 5.02273 5.11054 5.22362 5.24413 5.27274 5.30910 5.34969 5.42953 5.50319 5.51642 5.57771 5.69587 5.83120 5.93013 5.97191 6.04894 6.23342 6.29687 6.47441 6.49005 6.50467 6.56938 6.82074 7.09356 7.24655 7.36330 7.75925 7.79485 8.51443 8.86374 8.98838 9.55785 11.07304 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025375 B = 0.002064 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.183506 B =13561.624108 C =13895.401464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 N -0.476 5.476 4 C 0.202 3.798 5 C -0.038 4.038 6 C -0.096 4.096 7 C -0.012 4.012 8 C -0.520 4.520 9 H 0.071 0.929 10 C 0.066 3.934 11 N -0.903 5.903 12 Si 0.880 3.120 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.266 1.266 16 N -0.286 5.286 17 N -0.324 5.324 18 C 0.339 3.661 19 N -0.438 5.438 20 C 0.039 3.961 21 C -0.112 4.112 22 C -0.095 4.095 23 C 0.120 3.880 24 N -0.734 5.734 25 C 0.522 3.478 26 O -0.533 6.533 27 C -0.144 4.144 28 C 0.063 3.937 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.263 0.737 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.411 0.589 48 H 0.114 0.886 49 H 0.101 0.899 50 H 0.097 0.903 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.895 -6.421 -27.405 30.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.171 5.171 4 C -0.066 4.066 5 C -0.078 4.078 6 C -0.134 4.134 7 C -0.050 4.050 8 C -0.558 4.558 9 H 0.089 0.911 10 C -0.135 4.135 11 N -0.542 5.542 12 Si 0.708 3.292 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.190 1.190 16 N -0.124 5.124 17 N -0.168 5.168 18 C -0.018 4.018 19 N -0.161 5.161 20 C -0.088 4.088 21 C -0.150 4.150 22 C -0.097 4.097 23 C -0.005 4.005 24 N -0.390 5.390 25 C 0.308 3.692 26 O -0.409 6.409 27 C -0.184 4.184 28 C -0.064 4.064 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.249 0.751 48 H 0.132 0.868 49 H 0.120 0.880 50 H 0.115 0.885 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.372 -5.119 -27.263 29.980 hybrid contribution 0.584 -1.575 0.401 1.727 sum 11.956 -6.694 -26.862 30.155 Atomic orbital electron populations 1.22212 0.93142 1.03507 1.04207 1.21961 0.96730 0.78765 1.04400 1.46268 1.51246 1.13928 1.05646 1.25148 1.01196 0.88227 0.91994 1.20358 1.01817 1.01442 0.84137 1.21515 0.91584 1.01702 0.98632 1.19574 0.97892 0.96181 0.91325 1.21102 0.97011 1.40397 0.97316 0.91084 1.25040 0.95110 0.95280 0.98120 1.69917 1.18816 1.48150 1.17300 0.86774 0.81604 0.79971 0.80879 1.20214 1.21463 1.19032 1.74007 1.19019 1.17293 1.02114 1.74391 1.21187 1.17249 1.03975 1.22554 1.02033 0.89917 0.87318 1.60473 1.51512 1.06957 0.97200 1.23336 0.95536 0.93214 0.96669 1.22640 1.02617 0.93549 0.96146 1.21630 0.95607 0.96817 0.95600 1.21904 0.83092 1.01953 0.93570 1.46341 1.07598 1.75113 1.09954 1.21014 0.86455 0.74674 0.87046 1.90774 1.13558 1.50435 1.86167 1.22354 0.94262 1.05314 0.96473 1.22774 0.97202 0.93167 0.93229 0.90373 0.90550 0.91585 0.89115 0.88533 0.90537 0.88527 0.91856 0.92737 0.96599 0.96670 0.92733 0.92366 0.88833 0.89110 0.89715 0.89511 0.90094 0.75062 0.86774 0.88030 0.88472 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.10 0.95 6.62 -4.04 -0.03 0.93 16 3 N -0.48 -6.02 2.81 -114.08 -0.32 -6.34 16 4 C 0.20 3.13 7.32 -154.02 -1.13 2.00 16 5 C -0.04 -0.57 5.59 -27.88 -0.16 -0.73 16 6 C -0.10 -1.81 5.13 -26.74 -0.14 -1.94 16 7 C -0.01 -0.28 4.04 -27.89 -0.11 -0.39 16 8 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 9 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 10 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 11 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 12 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 16 N -0.29 -5.06 12.18 32.99 0.40 -4.66 16 17 N -0.32 -5.13 10.48 30.31 0.32 -4.81 16 18 C 0.34 4.33 6.98 -318.88 -2.23 2.11 16 19 N -0.44 -3.94 5.24 -171.64 -0.90 -4.84 16 20 C 0.04 0.25 5.46 -2.06 -0.01 0.24 16 21 C -0.11 -0.48 5.92 -25.27 -0.15 -0.63 16 22 C -0.10 -0.49 0.72 -154.36 -0.11 -0.61 16 23 C 0.12 0.42 6.88 -3.73 -0.03 0.39 16 24 N -0.73 -4.04 6.26 -59.59 -0.37 -4.41 16 25 C 0.52 4.75 8.46 -10.60 -0.09 4.66 16 26 O -0.53 -7.33 18.03 5.56 0.10 -7.23 16 27 C -0.14 -1.07 5.92 -27.39 -0.16 -1.23 16 28 C 0.06 0.47 6.01 -3.44 -0.02 0.45 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.96 6.27 -51.93 -0.33 0.64 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.60 5.43 -51.93 -0.28 0.32 16 33 H 0.10 0.80 7.25 -51.93 -0.38 0.43 16 34 H 0.08 0.99 7.26 -51.93 -0.38 0.61 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 1.01 6.27 -51.93 -0.33 0.69 16 38 H 0.02 0.35 7.20 -51.93 -0.37 -0.03 16 39 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.06 0.44 7.78 -51.93 -0.40 0.03 16 42 H 0.09 0.46 6.70 -51.93 -0.35 0.12 16 43 H 0.09 0.27 7.81 -51.93 -0.41 -0.14 16 44 H 0.08 0.35 7.96 -51.93 -0.41 -0.06 16 45 H 0.09 0.15 7.66 -51.93 -0.40 -0.25 16 46 H 0.08 0.23 7.88 -51.93 -0.41 -0.18 16 47 H 0.41 1.70 8.96 -40.82 -0.37 1.33 16 48 H 0.11 0.93 7.53 -51.93 -0.39 0.54 16 49 H 0.10 0.79 7.85 -51.93 -0.41 0.38 16 50 H 0.10 0.58 7.84 -51.93 -0.41 0.17 16 51 H 0.10 1.00 5.67 -51.93 -0.29 0.70 16 LS Contribution 397.37 15.07 5.99 5.99 Total: -1.00 -36.52 397.37 -11.06 -47.58 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.97 Total: -1.88 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -4.41 Total: -9.14 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.10 Total: -51.87 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.10 Total: -7.23 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.52 -11.06 -47.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340973521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.867 kcal (2) G-P(sol) polarization free energy of solvation -36.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds