Wall clock time and date at job start Wed Apr 1 2020 04:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47199 * 2 1 4 4 C 1.36740 * 127.13460 * 95.23768 * 3 2 1 5 5 C 1.50697 * 126.34721 * 0.02562 * 4 3 2 6 6 C 1.53007 * 109.46824 * 269.70669 * 5 4 3 7 7 C 1.52996 * 109.46901 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.46937 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00090 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00183 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99714 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00034 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47204 * 90.00182 * 12 10 8 14 14 H 1.48505 * 109.47065 * 210.00047 * 12 10 8 15 15 H 1.48496 * 109.47168 * 329.99976 * 12 10 8 16 16 N 1.30300 * 107.30220 * 179.73506 * 4 3 2 17 17 N 1.28518 * 110.05247 * 0.26701 * 16 4 3 18 18 C 1.31218 * 109.86496 * 0.02562 * 17 16 4 19 19 N 1.38584 * 126.47274 * 180.02562 * 18 17 16 20 20 C 1.47187 * 110.99917 * 292.77882 * 19 18 17 21 21 C 1.52991 * 108.72820 * 54.37245 * 20 19 18 22 22 N 1.46009 * 110.04249 * 50.29176 * 21 20 19 23 23 C 1.46495 * 118.53668 * 161.86473 * 22 21 20 24 24 C 1.53000 * 117.50219 * 13.47303 * 23 22 21 25 25 C 1.53002 * 60.00267 * 252.51320 * 24 23 22 26 26 C 1.33720 * 122.92365 * 341.83908 * 22 21 20 27 27 O 1.21283 * 118.62126 * 181.68745 * 26 22 21 28 28 C 1.46903 * 111.00593 * 55.67377 * 19 18 17 29 29 H 1.09007 * 109.47524 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47450 * 299.99728 * 1 2 3 31 31 H 1.09005 * 109.47302 * 60.00025 * 1 2 3 32 32 H 1.09001 * 109.46832 * 239.99903 * 2 1 3 33 33 H 1.09001 * 109.46987 * 120.00363 * 2 1 3 34 34 H 1.09001 * 109.47408 * 149.71335 * 5 4 3 35 35 H 1.08998 * 109.47527 * 29.70707 * 5 4 3 36 36 H 1.09001 * 109.47038 * 60.00443 * 6 5 4 37 37 H 1.09002 * 109.46859 * 299.99851 * 6 5 4 38 38 H 1.08998 * 109.47467 * 300.00048 * 7 6 5 39 39 H 1.09001 * 109.47391 * 60.00630 * 7 6 5 40 40 H 0.97004 * 119.99726 * 179.97438 * 11 10 8 41 41 H 1.09001 * 109.59714 * 174.13918 * 20 19 18 42 42 H 1.09003 * 109.59963 * 294.60055 * 20 19 18 43 43 H 1.08999 * 109.37407 * 170.46467 * 21 20 19 44 44 H 1.08997 * 109.37043 * 290.23262 * 21 20 19 45 45 H 1.08998 * 115.55185 * 159.19044 * 23 22 21 46 46 H 1.09000 * 117.49432 * 0.02562 * 24 23 22 47 47 H 1.09000 * 117.50264 * 145.01878 * 24 23 22 48 48 H 1.09000 * 117.49737 * 252.50858 * 25 24 23 49 49 H 1.09000 * 117.49804 * 107.48640 * 25 24 23 50 50 H 1.09002 * 109.38127 * 47.08288 * 28 19 18 51 51 H 1.08994 * 109.38749 * 166.77479 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3873 2.1263 1.0856 5 6 2.3693 1.6782 2.5243 6 6 1.0113 2.0115 3.1453 7 6 0.9932 1.5572 4.6061 8 6 -0.3441 1.8861 5.2179 9 1 -1.1052 2.3703 4.6241 10 6 -0.5965 1.5678 6.5356 11 7 0.3302 0.9777 7.2585 12 14 -2.2545 1.9749 7.2937 13 1 -3.1819 0.8316 7.0990 14 1 -2.0846 2.2326 8.7463 15 1 -2.8149 3.1840 6.6386 16 7 2.7633 3.2934 0.6448 17 7 2.6524 3.3379 -0.6348 18 6 2.1955 2.1923 -1.0828 19 7 1.9471 1.8654 -2.4065 20 6 0.8256 2.6534 -2.9428 21 6 1.1199 4.1387 -2.7242 22 7 2.4579 4.4608 -3.2120 23 6 2.7890 5.8640 -3.4720 24 6 1.8354 6.9280 -2.9248 25 6 1.8789 6.6394 -4.4267 26 6 3.3946 3.5321 -3.4316 27 8 4.4906 3.8900 -3.8079 28 6 3.1461 2.0638 -3.2318 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.1567 2.1928 3.0750 35 1 2.5363 0.6021 2.5718 36 1 0.2238 1.4969 2.5946 37 1 0.8444 3.0876 3.0977 38 1 1.1604 0.4812 4.6541 39 1 1.7806 2.0721 5.1566 40 1 0.1528 0.7541 8.1856 41 1 0.7168 2.4555 -4.0092 42 1 -0.0933 2.3825 -2.4228 43 1 0.3849 4.7362 -3.2634 44 1 1.0604 4.3662 -1.6599 45 1 3.8528 6.1010 -3.4871 46 1 0.9619 6.5840 -2.3710 47 1 2.2718 7.8653 -2.5795 48 1 2.3440 7.3869 -5.0696 49 1 1.0338 6.1055 -4.8613 50 1 4.0061 1.6158 -2.7339 51 1 3.0015 1.5861 -4.2007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342629636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:47 Heat of formation + Delta-G solvation = 86.712954 kcal Electronic energy + Delta-G solvation = -31780.308632 eV Core-core repulsion = 27717.514759 eV Total energy + Delta-G solvation = -4062.793873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.11279 -40.94136 -37.77040 -37.48033 -35.88480 -34.76476 -33.41581 -32.46351 -30.64965 -30.28557 -29.98542 -27.45888 -26.56989 -24.36175 -23.95426 -23.71878 -22.61897 -22.45318 -21.16886 -20.80940 -20.03376 -19.04107 -17.58539 -17.30607 -16.91402 -16.41016 -16.30737 -16.07312 -15.62259 -14.99511 -14.80075 -14.72428 -14.49706 -14.27946 -14.07051 -13.78937 -13.44041 -13.20503 -13.06256 -12.73655 -12.47040 -12.40656 -12.29977 -12.04029 -11.93779 -11.75213 -11.69853 -11.40693 -11.33543 -11.10481 -10.98188 -10.87131 -10.83041 -10.71165 -10.59594 -10.24694 -10.10799 -9.80259 -9.55933 -9.22463 -9.05082 -8.79854 -8.59760 -8.40297 -6.05438 -4.07925 1.68175 2.07988 2.38157 2.62057 2.88532 3.27866 3.34981 3.37989 3.38472 3.66966 4.05551 4.34097 4.37943 4.40930 4.49799 4.53814 4.57846 4.67036 4.70175 4.79996 4.85116 4.92000 4.99822 5.08868 5.14033 5.17628 5.29170 5.30910 5.35978 5.45793 5.49672 5.53049 5.60485 5.75185 5.77692 5.81097 5.81610 5.93673 5.97648 6.04035 6.07031 6.27897 6.49528 6.57038 6.69546 6.97085 7.07829 7.22079 7.59412 7.72373 7.93475 7.94170 8.35505 8.79625 8.98531 9.56498 11.05802 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.002517 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.908788 B =11120.957276 C =11781.410010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.457 5.457 4 C 0.212 3.788 5 C -0.038 4.038 6 C -0.101 4.101 7 C 0.023 3.977 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 N -0.292 5.292 17 N -0.294 5.294 18 C 0.305 3.695 19 N -0.449 5.449 20 C 0.047 3.953 21 C 0.077 3.923 22 N -0.557 5.557 23 C 0.085 3.915 24 C -0.182 4.182 25 C -0.195 4.195 26 C 0.504 3.496 27 O -0.549 6.549 28 C 0.056 3.944 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.017 0.983 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.135 0.865 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.093 0.907 50 H 0.113 0.887 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 0.423 -24.981 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.015 4.015 3 N -0.150 5.150 4 C -0.055 4.055 5 C -0.077 4.077 6 C -0.140 4.140 7 C -0.014 4.014 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 N -0.132 5.132 17 N -0.139 5.139 18 C -0.050 4.050 19 N -0.174 5.174 20 C -0.081 4.081 21 C -0.048 4.048 22 N -0.287 5.287 23 C -0.020 4.020 24 C -0.220 4.220 25 C -0.234 4.234 26 C 0.291 3.709 27 O -0.427 6.427 28 C -0.075 4.075 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.152 0.848 46 H 0.117 0.883 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.112 0.888 50 H 0.131 0.869 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.559 1.368 -25.019 25.105 hybrid contribution -1.375 -0.415 0.576 1.548 sum 0.184 0.953 -24.443 24.462 Atomic orbital electron populations 1.22164 0.93498 1.03556 1.03413 1.21879 0.96230 0.78560 1.04834 1.46423 1.48771 1.13704 1.06103 1.25411 0.98992 0.88843 0.92236 1.20405 1.02486 1.01311 0.83546 1.21671 0.91919 1.01088 0.99325 1.19094 0.97394 0.96524 0.88386 1.21198 0.99443 1.39114 0.96166 0.92770 1.25007 0.96848 0.95196 0.97297 1.69955 1.33293 1.41644 1.08469 0.86612 0.84253 0.78747 0.78518 1.20699 1.21165 1.19865 1.74122 1.19881 1.16830 1.02357 1.74707 1.17545 1.17328 1.04308 1.22154 1.06347 0.88651 0.87878 1.59086 1.06802 1.55059 0.96428 1.22661 0.93649 0.89887 1.01861 1.22197 0.83959 0.96785 1.01815 1.46510 1.12641 1.05601 1.63935 1.21589 0.97835 0.79473 1.03058 1.23310 1.02232 1.00267 0.96158 1.23388 1.03092 1.03678 0.93210 1.20628 0.84158 0.89056 0.77058 1.90707 1.22970 1.81627 1.47350 1.22463 0.92945 0.92286 0.99782 0.90233 0.90990 0.92067 0.88544 0.88340 0.88397 0.90309 0.93433 0.92509 0.96501 0.96179 0.92943 0.88126 0.87963 0.90137 0.89486 0.84757 0.88286 0.87855 0.88107 0.88816 0.86874 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 37.16 0.38 -1.14 16 2 C 0.11 1.02 6.79 -4.04 -0.03 0.99 16 3 N -0.46 -5.89 2.81 -114.09 -0.32 -6.21 16 4 C 0.21 3.34 7.32 -154.01 -1.13 2.21 16 5 C -0.04 -0.60 5.58 -27.88 -0.16 -0.76 16 6 C -0.10 -1.94 5.13 -26.73 -0.14 -2.08 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 8 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 9 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 12 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 N -0.29 -5.24 12.18 32.99 0.40 -4.84 16 17 N -0.29 -4.75 8.43 30.31 0.26 -4.49 16 18 C 0.31 3.98 6.01 -318.87 -1.92 2.06 16 19 N -0.45 -4.29 5.06 -175.91 -0.89 -5.18 16 20 C 0.05 0.35 6.02 -3.67 -0.02 0.33 16 21 C 0.08 0.72 4.32 -4.31 -0.02 0.70 16 22 N -0.56 -6.34 2.75 -167.00 -0.46 -6.80 16 23 C 0.09 0.94 6.18 -67.93 -0.42 0.52 16 24 C -0.18 -1.66 9.75 -26.73 -0.26 -1.92 16 25 C -0.20 -1.58 10.01 -26.73 -0.27 -1.85 16 26 C 0.50 6.50 6.53 -11.67 -0.08 6.42 16 27 O -0.55 -9.04 16.38 5.55 0.09 -8.95 16 28 C 0.06 0.54 5.85 -5.19 -0.03 0.51 16 29 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.07 0.83 6.84 -51.93 -0.35 0.47 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.89 7.10 -51.93 -0.37 0.52 16 34 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.08 1.10 7.17 -51.93 -0.37 0.73 16 36 H 0.05 0.87 6.84 -51.93 -0.35 0.52 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.10 0.51 8.08 -51.93 -0.42 0.10 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.58 6.60 -51.93 -0.34 0.24 16 44 H 0.09 1.08 6.27 -51.93 -0.33 0.75 16 45 H 0.13 1.71 7.37 -51.93 -0.38 1.33 16 46 H 0.10 0.91 6.80 -51.93 -0.35 0.56 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.09 0.68 7.61 -51.93 -0.40 0.29 16 50 H 0.11 1.21 8.01 -51.93 -0.42 0.79 16 51 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -34.53 405.32 -12.00 -46.53 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.28 Total: -0.33 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -4.63 Total: -6.58 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.28 Total: -52.92 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.53 -12.00 -46.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342629636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.248 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds