Wall clock time and date at job start Wed Apr 1 2020 04:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47199 * 2 1 4 4 C 1.36740 * 127.13460 * 95.23768 * 3 2 1 5 5 C 1.50697 * 126.34721 * 0.02562 * 4 3 2 6 6 C 1.53007 * 109.46824 * 269.70669 * 5 4 3 7 7 C 1.52996 * 109.46901 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.46937 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00090 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00183 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99714 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00034 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47204 * 90.00182 * 12 10 8 14 14 H 1.48505 * 109.47065 * 210.00047 * 12 10 8 15 15 H 1.48496 * 109.47168 * 329.99976 * 12 10 8 16 16 N 1.30300 * 107.30220 * 179.73506 * 4 3 2 17 17 N 1.28518 * 110.05247 * 0.26701 * 16 4 3 18 18 C 1.31218 * 109.86496 * 0.02562 * 17 16 4 19 19 N 1.38584 * 126.47274 * 180.02562 * 18 17 16 20 20 C 1.47187 * 110.99917 * 292.77882 * 19 18 17 21 21 C 1.52991 * 108.72820 * 54.37245 * 20 19 18 22 22 N 1.46009 * 110.04249 * 50.29176 * 21 20 19 23 23 C 1.46495 * 118.53668 * 161.86473 * 22 21 20 24 24 C 1.53000 * 117.50219 * 13.47303 * 23 22 21 25 25 C 1.53002 * 60.00267 * 252.51320 * 24 23 22 26 26 C 1.33720 * 122.92365 * 341.83908 * 22 21 20 27 27 O 1.21283 * 118.62126 * 181.68745 * 26 22 21 28 28 C 1.46903 * 111.00593 * 55.67377 * 19 18 17 29 29 H 1.09007 * 109.47524 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47450 * 299.99728 * 1 2 3 31 31 H 1.09005 * 109.47302 * 60.00025 * 1 2 3 32 32 H 1.09001 * 109.46832 * 239.99903 * 2 1 3 33 33 H 1.09001 * 109.46987 * 120.00363 * 2 1 3 34 34 H 1.09001 * 109.47408 * 149.71335 * 5 4 3 35 35 H 1.08998 * 109.47527 * 29.70707 * 5 4 3 36 36 H 1.09001 * 109.47038 * 60.00443 * 6 5 4 37 37 H 1.09002 * 109.46859 * 299.99851 * 6 5 4 38 38 H 1.08998 * 109.47467 * 300.00048 * 7 6 5 39 39 H 1.09001 * 109.47391 * 60.00630 * 7 6 5 40 40 H 0.97004 * 119.99726 * 179.97438 * 11 10 8 41 41 H 1.09001 * 109.59714 * 174.13918 * 20 19 18 42 42 H 1.09003 * 109.59963 * 294.60055 * 20 19 18 43 43 H 1.08999 * 109.37407 * 170.46467 * 21 20 19 44 44 H 1.08997 * 109.37043 * 290.23262 * 21 20 19 45 45 H 1.08998 * 115.55185 * 159.19044 * 23 22 21 46 46 H 1.09000 * 117.49432 * 0.02562 * 24 23 22 47 47 H 1.09000 * 117.50264 * 145.01878 * 24 23 22 48 48 H 1.09000 * 117.49737 * 252.50858 * 25 24 23 49 49 H 1.09000 * 117.49804 * 107.48640 * 25 24 23 50 50 H 1.09002 * 109.38127 * 47.08288 * 28 19 18 51 51 H 1.08994 * 109.38749 * 166.77479 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3873 2.1263 1.0856 5 6 2.3693 1.6782 2.5243 6 6 1.0113 2.0115 3.1453 7 6 0.9932 1.5572 4.6061 8 6 -0.3441 1.8861 5.2179 9 1 -1.1052 2.3703 4.6241 10 6 -0.5965 1.5678 6.5356 11 7 0.3302 0.9777 7.2585 12 14 -2.2545 1.9749 7.2937 13 1 -3.1819 0.8316 7.0990 14 1 -2.0846 2.2326 8.7463 15 1 -2.8149 3.1840 6.6386 16 7 2.7633 3.2934 0.6448 17 7 2.6524 3.3379 -0.6348 18 6 2.1955 2.1923 -1.0828 19 7 1.9471 1.8654 -2.4065 20 6 0.8256 2.6534 -2.9428 21 6 1.1199 4.1387 -2.7242 22 7 2.4579 4.4608 -3.2120 23 6 2.7890 5.8640 -3.4720 24 6 1.8354 6.9280 -2.9248 25 6 1.8789 6.6394 -4.4267 26 6 3.3946 3.5321 -3.4316 27 8 4.4906 3.8900 -3.8079 28 6 3.1461 2.0638 -3.2318 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.1567 2.1928 3.0750 35 1 2.5363 0.6021 2.5718 36 1 0.2238 1.4969 2.5946 37 1 0.8444 3.0876 3.0977 38 1 1.1604 0.4812 4.6541 39 1 1.7806 2.0721 5.1566 40 1 0.1528 0.7541 8.1856 41 1 0.7168 2.4555 -4.0092 42 1 -0.0933 2.3825 -2.4228 43 1 0.3849 4.7362 -3.2634 44 1 1.0604 4.3662 -1.6599 45 1 3.8528 6.1010 -3.4871 46 1 0.9619 6.5840 -2.3710 47 1 2.2718 7.8653 -2.5795 48 1 2.3440 7.3869 -5.0696 49 1 1.0338 6.1055 -4.8613 50 1 4.0061 1.6158 -2.7339 51 1 3.0015 1.5861 -4.2007 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342629636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:46 Heat of formation + Delta-G solvation = 67.078287 kcal Electronic energy + Delta-G solvation = -31781.160055 eV Core-core repulsion = 27717.514759 eV Total energy + Delta-G solvation = -4063.645296 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.20197 -41.82939 -38.64521 -38.36246 -37.01100 -36.27984 -34.53574 -34.07416 -31.63749 -31.32683 -31.06919 -28.92893 -27.57683 -25.72920 -24.98874 -24.74965 -23.38422 -23.24432 -22.56386 -21.97750 -21.33476 -19.92343 -18.52634 -18.42048 -18.15085 -17.77302 -17.33793 -16.98875 -16.62150 -16.48280 -15.93173 -15.78106 -15.60283 -15.45975 -15.07355 -14.87846 -14.30407 -14.18907 -14.02560 -13.87338 -13.82117 -13.50720 -13.38820 -13.23175 -13.04222 -12.72325 -12.65184 -12.56697 -12.51662 -12.42006 -12.35864 -12.26457 -11.97332 -11.84508 -11.53168 -11.48193 -11.43946 -11.29925 -11.23804 -11.08511 -10.53059 -10.09503 -9.90278 -9.48199 -8.18700 -6.28687 0.62257 1.12581 1.40629 1.42181 1.44274 1.52702 1.70102 1.79336 2.41977 2.56381 2.91574 3.15168 3.28183 3.31185 3.60576 3.66414 3.74120 3.74589 3.91636 3.94555 3.98716 4.08628 4.14919 4.24877 4.31267 4.35950 4.37337 4.42515 4.48992 4.53069 4.60426 4.68706 4.69626 4.77780 4.83881 4.88290 4.98463 4.98776 5.06001 5.13593 5.13711 5.17398 5.21563 5.32784 5.44533 5.46572 5.53679 5.75414 5.86935 6.09470 6.26494 6.35603 6.87447 7.02204 7.40222 7.64644 8.92770 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.002517 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.908788 B =11120.957276 C =11781.410010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.451 5.451 4 C 0.203 3.797 5 C -0.026 4.026 6 C -0.081 4.081 7 C 0.028 3.972 8 C -0.541 4.541 9 H 0.056 0.944 10 C 0.003 3.997 11 N -0.930 5.930 12 Si 0.959 3.041 13 H -0.269 1.269 14 H -0.284 1.284 15 H -0.267 1.267 16 N -0.332 5.332 17 N -0.326 5.326 18 C 0.323 3.677 19 N -0.434 5.434 20 C 0.047 3.953 21 C 0.076 3.924 22 N -0.553 5.553 23 C 0.050 3.950 24 C -0.179 4.179 25 C -0.165 4.165 26 C 0.493 3.507 27 O -0.598 6.598 28 C 0.061 3.939 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.006 0.994 39 H -0.007 1.007 40 H 0.263 0.737 41 H 0.138 0.862 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.055 0.945 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.102 0.898 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 -0.795 -27.323 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.021 4.021 3 N -0.143 5.143 4 C -0.066 4.066 5 C -0.066 4.066 6 C -0.120 4.120 7 C -0.009 4.009 8 C -0.579 4.579 9 H 0.074 0.926 10 C -0.195 4.195 11 N -0.570 5.570 12 Si 0.784 3.216 13 H -0.195 1.195 14 H -0.209 1.209 15 H -0.192 1.192 16 N -0.173 5.173 17 N -0.170 5.170 18 C -0.034 4.034 19 N -0.159 5.159 20 C -0.080 4.080 21 C -0.047 4.047 22 N -0.282 5.282 23 C -0.055 4.055 24 C -0.217 4.217 25 C -0.203 4.203 26 C 0.281 3.719 27 O -0.479 6.479 28 C -0.069 4.069 29 H 0.120 0.880 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.024 0.976 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.073 0.927 45 H 0.124 0.876 46 H 0.117 0.883 47 H 0.124 0.876 48 H 0.130 0.870 49 H 0.129 0.871 50 H 0.120 0.880 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.971 0.148 -27.365 27.383 hybrid contribution -0.593 -0.009 1.258 1.391 sum -1.564 0.139 -26.108 26.155 Atomic orbital electron populations 1.22129 0.92870 1.04684 1.02336 1.22244 0.96683 0.76767 1.06425 1.46577 1.47992 1.14625 1.05122 1.25088 0.99948 0.88997 0.92555 1.20152 1.00052 1.02543 0.83807 1.21341 0.94391 0.99775 0.96500 1.18972 0.95394 0.95430 0.91130 1.21639 1.00606 1.38931 0.96738 0.92620 1.25887 1.00674 0.95020 0.97899 1.70076 1.35393 1.42728 1.08852 0.85543 0.79729 0.78942 0.77434 1.19455 1.20949 1.19175 1.74025 1.21241 1.18359 1.03632 1.74656 1.19400 1.19262 1.03665 1.22543 1.03935 0.87677 0.89237 1.59373 1.07232 1.54774 0.94498 1.22918 0.92996 0.87932 1.04150 1.22287 0.83434 0.98860 1.00155 1.46608 1.13197 1.05490 1.62872 1.21601 0.97198 0.80180 1.06500 1.23336 1.01433 0.99542 0.97387 1.23437 1.02001 1.02352 0.92490 1.21266 0.83664 0.90528 0.76431 1.90680 1.24841 1.82544 1.49850 1.22552 0.92684 0.90219 1.01463 0.88001 0.93850 0.91229 0.85901 0.87875 0.89317 0.88118 0.92343 0.94260 0.97600 0.98865 0.92778 0.84412 0.86569 0.87498 0.92712 0.87626 0.88255 0.87634 0.86955 0.87095 0.87963 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 71.98 0.74 -1.74 16 2 C 0.10 1.62 6.79 86.38 0.59 2.21 16 3 N -0.45 -11.02 2.81 -514.86 -1.45 -12.47 16 4 C 0.20 6.41 7.32 137.64 1.01 7.42 16 5 C -0.03 -0.83 5.58 29.85 0.17 -0.67 16 6 C -0.08 -3.18 5.13 30.60 0.16 -3.02 16 7 C 0.03 1.39 4.97 29.85 0.15 1.54 16 8 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 9 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 10 C 0.00 0.18 5.46 84.66 0.46 0.64 16 11 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 12 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 N -0.33 -12.30 12.18 -49.54 -0.60 -12.90 16 17 N -0.33 -10.66 8.43 -58.00 -0.49 -11.15 16 18 C 0.32 8.01 6.01 260.11 1.56 9.57 16 19 N -0.43 -7.06 5.06 -710.45 -3.60 -10.65 16 20 C 0.05 0.53 6.02 86.25 0.52 1.05 16 21 C 0.08 1.29 4.32 86.47 0.37 1.66 16 22 N -0.55 -12.25 2.75 -801.23 -2.20 -14.46 16 23 C 0.05 1.12 6.18 44.99 0.28 1.39 16 24 C -0.18 -3.18 9.75 30.59 0.30 -2.88 16 25 C -0.16 -2.38 10.01 30.60 0.31 -2.07 16 26 C 0.49 12.52 6.53 87.68 0.57 13.09 16 27 O -0.60 -20.36 16.38 -3.04 -0.05 -20.41 16 28 C 0.06 1.06 5.85 85.42 0.50 1.56 16 29 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.04 0.92 6.84 -2.38 -0.02 0.91 16 31 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.62 7.10 -2.39 -0.02 1.60 16 34 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.10 2.76 7.17 -2.39 -0.02 2.75 16 36 H 0.06 2.14 6.84 -2.39 -0.02 2.13 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.14 0.66 8.08 -2.39 -0.02 0.64 16 42 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.11 1.22 6.60 -2.39 -0.02 1.21 16 44 H 0.05 1.33 6.27 -2.39 -0.01 1.32 16 45 H 0.11 2.93 7.37 -2.39 -0.02 2.92 16 46 H 0.10 1.76 6.80 -2.39 -0.02 1.74 16 47 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.11 1.24 7.61 -2.39 -0.02 1.23 16 50 H 0.10 2.06 8.01 -2.39 -0.02 2.04 16 51 H 0.17 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -79.10 405.32 2.76 -76.34 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.93 Total: 15.11 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 7.91 Total: 0.09 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -8.06 Total: -116.47 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -79.10 2.76 -76.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342629636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.423 kcal (2) G-P(sol) polarization free energy of solvation -79.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds