Wall clock time and date at job start Wed Apr 1 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47099 * 2 1 4 4 C 1.36745 * 127.13821 * 264.44682 * 3 2 1 5 5 C 1.50703 * 126.34369 * 0.06118 * 4 3 2 6 6 C 1.52999 * 109.47305 * 89.99818 * 5 4 3 7 7 C 1.50696 * 109.47032 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00085 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00165 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00412 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99636 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47252 * 90.00027 * 11 9 7 13 13 H 1.48500 * 109.47143 * 209.99884 * 11 9 7 14 14 H 1.48497 * 109.47158 * 329.99871 * 11 9 7 15 15 N 1.30288 * 107.30812 * 180.02562 * 4 3 2 16 16 N 1.28535 * 110.05098 * 359.73139 * 15 4 3 17 17 C 1.31214 * 109.85802 * 0.44923 * 16 15 4 18 18 N 1.38589 * 126.47045 * 179.82430 * 17 16 15 19 19 C 1.46694 * 110.99951 * 55.52125 * 18 17 16 20 20 C 1.53288 * 110.16394 * 175.11189 * 19 18 17 21 21 C 1.52722 * 108.57506 * 58.28907 * 20 19 18 22 22 H 1.09000 * 108.12476 * 59.17820 * 21 20 19 23 23 N 1.45322 * 112.13298 * 179.12952 * 21 20 19 24 24 C 1.33708 * 122.87083 * 145.18382 * 23 21 20 25 25 O 1.21285 * 117.97384 * 175.79958 * 24 23 21 26 26 C 1.50059 * 124.05210 * 355.77641 * 24 23 21 27 27 C 1.53218 * 110.64093 * 15.69938 * 26 24 23 28 28 C 1.52857 * 108.10061 * 313.83214 * 27 26 24 29 29 H 1.09004 * 109.43466 * 308.25741 * 28 27 26 30 30 C 1.47105 * 110.99850 * 290.39581 * 18 17 16 31 31 H 1.08993 * 109.46998 * 66.53821 * 1 2 3 32 32 H 1.08993 * 109.46885 * 186.54346 * 1 2 3 33 33 H 1.09007 * 109.46541 * 306.54024 * 1 2 3 34 34 H 1.08997 * 109.47098 * 240.00088 * 2 1 3 35 35 H 1.08996 * 109.47465 * 119.99900 * 2 1 3 36 36 H 1.09003 * 109.46606 * 209.99606 * 5 4 3 37 37 H 1.09005 * 109.47186 * 329.99291 * 5 4 3 38 38 H 1.09003 * 109.46974 * 300.00013 * 6 5 4 39 39 H 1.08998 * 109.46797 * 59.99765 * 6 5 4 40 40 H 0.96998 * 120.00227 * 180.02562 * 10 9 7 41 41 H 1.08996 * 109.35588 * 54.89887 * 19 18 17 42 42 H 1.09003 * 109.24058 * 295.25112 * 19 18 17 43 43 H 1.09003 * 109.61971 * 298.55917 * 20 19 18 44 44 H 1.09002 * 109.62423 * 178.01763 * 20 19 18 45 45 H 0.96996 * 118.56169 * 325.15993 * 23 21 20 46 46 H 1.08997 * 109.24094 * 135.99653 * 26 24 23 47 47 H 1.09000 * 109.24317 * 255.43765 * 26 24 23 48 48 H 1.09000 * 109.73537 * 194.18318 * 27 26 24 49 49 H 1.09000 * 109.73967 * 73.47971 * 27 26 24 50 50 H 1.09001 * 109.59150 * 65.77355 * 30 18 17 51 51 H 1.09005 * 109.58729 * 305.34960 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3930 2.1245 -1.0850 5 6 2.3808 1.6743 -2.5232 6 6 1.0233 2.0017 -3.1486 7 6 1.0114 1.5521 -4.5868 8 1 1.8845 1.0797 -5.0122 9 6 -0.1145 1.7428 -5.3595 10 7 -0.1251 1.3501 -6.6145 11 14 -1.6249 2.5593 -4.6235 12 1 -1.5411 4.0282 -4.8246 13 1 -2.8445 2.0371 -5.2907 14 1 -1.6898 2.2615 -3.1701 15 7 2.7617 3.2941 -0.6450 16 7 2.6411 3.3420 0.6337 17 6 2.1943 2.1928 1.0827 18 7 1.9429 1.8669 2.4060 19 6 1.0108 2.8222 3.0147 20 6 0.6517 2.3770 4.4369 21 6 1.9381 2.2725 5.2534 22 1 2.4189 3.2507 5.2552 23 7 1.6836 1.8731 6.6273 24 6 2.5175 1.0927 7.3225 25 8 2.2572 0.8776 8.4874 26 6 3.7551 0.4660 6.7504 27 6 4.1369 1.1354 5.4261 28 6 2.8720 1.2656 4.5778 29 1 2.3763 0.2969 4.5148 30 6 3.1956 1.7599 3.1697 31 1 -0.3633 0.4091 -0.9427 32 1 -0.3633 -1.0209 0.1171 33 1 -0.3633 0.6119 0.8257 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.1679 2.1911 -3.0723 37 1 2.5520 0.5988 -2.5687 38 1 0.2362 1.4849 -2.5994 39 1 0.8523 3.0772 -3.1030 40 1 -0.9171 1.4846 -7.1581 41 1 0.1036 2.8753 2.4129 42 1 1.4781 3.8063 3.0514 43 1 0.1597 1.4049 4.4028 44 1 -0.0129 3.1106 4.8933 45 1 0.8736 2.1868 7.0589 46 1 4.5753 0.5786 7.4594 47 1 3.5734 -0.5947 6.5768 48 1 4.8702 0.5227 4.9019 49 1 4.5533 2.1239 5.6200 50 1 3.6737 2.7378 3.2265 51 1 3.8637 1.0523 2.6786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342846614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:35 Heat of formation + Delta-G solvation = 33.314992 kcal Electronic energy + Delta-G solvation = -31473.998005 eV Core-core repulsion = 27408.888623 eV Total energy + Delta-G solvation = -4065.109382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.82813 -41.14947 -39.03587 -36.28296 -35.66039 -34.23540 -34.09868 -32.28778 -31.52195 -30.45032 -30.38091 -28.65256 -25.70141 -24.96075 -24.68626 -23.86848 -23.09997 -21.88455 -21.35194 -20.32151 -19.87544 -19.68521 -17.65471 -17.44790 -16.92205 -16.58659 -16.30774 -15.84959 -15.73472 -15.24465 -14.91940 -14.65399 -14.52972 -14.23476 -14.14202 -13.89358 -13.56342 -13.42239 -13.36781 -13.06013 -12.95218 -12.67305 -12.37952 -12.25263 -12.00397 -11.80038 -11.63663 -11.54670 -11.43510 -11.38228 -11.21988 -11.06745 -11.03970 -10.54198 -10.42100 -10.15072 -10.08269 -9.95617 -9.89695 -9.50177 -9.34614 -9.01258 -8.63620 -8.62631 -6.14493 -4.14115 1.88010 2.22803 2.30087 2.80379 3.06001 3.24640 3.32279 3.34349 3.43928 3.92580 4.02206 4.08399 4.24307 4.36147 4.55391 4.56381 4.64429 4.76092 4.78386 4.83519 4.90544 4.92082 4.98156 5.13978 5.15300 5.18003 5.18687 5.19497 5.30065 5.32229 5.37746 5.41687 5.43768 5.53634 5.60638 5.63269 5.69681 5.84758 6.07923 6.13043 6.20003 6.26062 6.35314 6.41356 6.43998 6.73670 6.89099 7.09125 7.20435 7.28651 7.64021 7.79662 8.39306 8.88614 8.96637 9.47014 10.98340 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.002323 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.758171 B =12049.868623 C =12340.732664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.462 5.462 4 C 0.214 3.786 5 C -0.024 4.024 6 C -0.003 4.003 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.877 3.123 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.268 1.268 15 N -0.296 5.296 16 N -0.311 5.311 17 C 0.320 3.680 18 N -0.462 5.462 19 C 0.073 3.927 20 C -0.124 4.124 21 C 0.138 3.862 22 H 0.073 0.927 23 N -0.713 5.713 24 C 0.521 3.479 25 O -0.560 6.560 26 C -0.133 4.133 27 C -0.118 4.118 28 C -0.097 4.097 29 H 0.092 0.908 30 C 0.078 3.922 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.015 0.985 39 H 0.020 0.980 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.400 0.600 46 H 0.103 0.897 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.057 0.943 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.934 -3.427 25.245 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.155 5.155 4 C -0.053 4.053 5 C -0.063 4.063 6 C -0.042 4.042 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.705 3.295 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.193 1.193 15 N -0.136 5.136 16 N -0.155 5.155 17 C -0.036 4.036 18 N -0.188 5.188 19 C -0.055 4.055 20 C -0.162 4.162 21 C 0.033 3.967 22 H 0.091 0.909 23 N -0.364 5.364 24 C 0.308 3.692 25 O -0.439 6.439 26 C -0.172 4.172 27 C -0.156 4.156 28 C -0.116 4.116 29 H 0.110 0.890 30 C -0.050 4.050 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.236 0.764 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.076 0.924 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.167 -2.679 25.607 26.261 hybrid contribution -1.462 -0.054 0.285 1.491 sum 3.705 -2.733 25.893 26.299 Atomic orbital electron populations 1.22151 0.93727 1.03085 1.03691 1.21806 0.96156 0.78710 1.04462 1.46470 1.48849 1.13884 1.06307 1.25663 0.98427 0.88684 0.92572 1.20262 1.02742 1.00883 0.82450 1.19564 0.90767 0.97131 0.96720 1.20996 1.01455 1.40194 0.93473 0.90594 1.24960 0.98512 0.94938 0.94635 1.69891 1.29626 1.47172 1.06962 0.86824 0.82750 0.80293 0.79669 1.20075 1.21293 1.19291 1.74077 1.20531 1.16808 1.02224 1.74491 1.18245 1.18142 1.04655 1.21988 1.05346 0.88497 0.87785 1.58247 1.14231 1.50092 0.96226 1.22023 0.95990 0.93469 0.93989 1.21911 0.96733 1.03596 0.93986 1.20907 0.96658 0.98173 0.80961 0.90879 1.45502 1.25515 1.51651 1.13779 1.20304 0.85020 0.77843 0.86010 1.90771 1.74933 1.61008 1.17186 1.21614 0.95903 1.01545 0.98169 1.21622 0.97257 1.02150 0.94558 1.21437 0.96292 1.00205 0.93689 0.88986 1.22065 0.89472 1.01708 0.91754 0.90966 0.90525 0.92049 0.88336 0.88953 0.88662 0.90551 0.96672 0.96167 0.92561 0.89764 0.92375 0.89949 0.89904 0.76367 0.87909 0.87965 0.89838 0.90715 0.92429 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.24 37.16 0.38 -1.52 16 2 C 0.11 1.24 6.79 -4.04 -0.03 1.21 16 3 N -0.46 -6.73 2.81 -114.08 -0.32 -7.05 16 4 C 0.21 3.79 7.32 -154.01 -1.13 2.66 16 5 C -0.02 -0.44 5.52 -27.88 -0.15 -0.59 16 6 C 0.00 -0.08 4.02 -27.89 -0.11 -0.19 16 7 C -0.52 -14.00 9.66 -34.44 -0.33 -14.33 16 8 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 11 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 15 N -0.30 -5.78 12.18 32.99 0.40 -5.38 16 16 N -0.31 -5.41 12.11 30.31 0.37 -5.04 16 17 C 0.32 4.52 6.47 -318.88 -2.06 2.45 16 18 N -0.46 -4.63 4.64 -174.51 -0.81 -5.44 16 19 C 0.07 0.65 5.31 -3.79 -0.02 0.62 16 20 C -0.12 -0.73 5.79 -26.72 -0.15 -0.88 16 21 C 0.14 0.80 2.74 -68.68 -0.19 0.62 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 N -0.71 -4.79 5.26 -55.15 -0.29 -5.08 16 24 C 0.52 4.53 7.70 -11.77 -0.09 4.44 16 25 O -0.56 -7.32 17.78 5.55 0.10 -7.22 16 26 C -0.13 -0.75 5.98 -28.08 -0.17 -0.92 16 27 C -0.12 -0.55 5.46 -26.69 -0.15 -0.69 16 28 C -0.10 -0.55 2.06 -90.82 -0.19 -0.74 16 29 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 30 C 0.08 0.62 4.84 -3.86 -0.02 0.60 16 31 H 0.07 1.03 6.88 -51.93 -0.36 0.67 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.10 1.06 7.10 -51.93 -0.37 0.69 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.08 1.27 7.18 -51.93 -0.37 0.89 16 38 H 0.02 0.34 5.93 -51.93 -0.31 0.03 16 39 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 42 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.40 2.47 8.72 -40.82 -0.36 2.12 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -34.38 402.14 -11.40 -45.77 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.50 Total: -1.88 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.51 Total: -5.36 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.12 Total: -53.86 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.10 Total: -7.22 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.38 -11.40 -45.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342846614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.086 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds