Wall clock time and date at job start Wed Apr 1 2020 04:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47099 * 2 1 4 4 C 1.36745 * 127.13821 * 264.44682 * 3 2 1 5 5 C 1.50703 * 126.34369 * 0.06118 * 4 3 2 6 6 C 1.52999 * 109.47305 * 89.99818 * 5 4 3 7 7 C 1.50696 * 109.47032 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00085 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00165 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00412 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99636 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47252 * 90.00027 * 11 9 7 13 13 H 1.48500 * 109.47143 * 209.99884 * 11 9 7 14 14 H 1.48497 * 109.47158 * 329.99871 * 11 9 7 15 15 N 1.30288 * 107.30812 * 180.02562 * 4 3 2 16 16 N 1.28535 * 110.05098 * 359.73139 * 15 4 3 17 17 C 1.31214 * 109.85802 * 0.44923 * 16 15 4 18 18 N 1.38589 * 126.47045 * 179.82430 * 17 16 15 19 19 C 1.46694 * 110.99951 * 55.52125 * 18 17 16 20 20 C 1.53288 * 110.16394 * 175.11189 * 19 18 17 21 21 C 1.52722 * 108.57506 * 58.28907 * 20 19 18 22 22 H 1.09000 * 108.12476 * 59.17820 * 21 20 19 23 23 N 1.45322 * 112.13298 * 179.12952 * 21 20 19 24 24 C 1.33708 * 122.87083 * 145.18382 * 23 21 20 25 25 O 1.21285 * 117.97384 * 175.79958 * 24 23 21 26 26 C 1.50059 * 124.05210 * 355.77641 * 24 23 21 27 27 C 1.53218 * 110.64093 * 15.69938 * 26 24 23 28 28 C 1.52857 * 108.10061 * 313.83214 * 27 26 24 29 29 H 1.09004 * 109.43466 * 308.25741 * 28 27 26 30 30 C 1.47105 * 110.99850 * 290.39581 * 18 17 16 31 31 H 1.08993 * 109.46998 * 66.53821 * 1 2 3 32 32 H 1.08993 * 109.46885 * 186.54346 * 1 2 3 33 33 H 1.09007 * 109.46541 * 306.54024 * 1 2 3 34 34 H 1.08997 * 109.47098 * 240.00088 * 2 1 3 35 35 H 1.08996 * 109.47465 * 119.99900 * 2 1 3 36 36 H 1.09003 * 109.46606 * 209.99606 * 5 4 3 37 37 H 1.09005 * 109.47186 * 329.99291 * 5 4 3 38 38 H 1.09003 * 109.46974 * 300.00013 * 6 5 4 39 39 H 1.08998 * 109.46797 * 59.99765 * 6 5 4 40 40 H 0.96998 * 120.00227 * 180.02562 * 10 9 7 41 41 H 1.08996 * 109.35588 * 54.89887 * 19 18 17 42 42 H 1.09003 * 109.24058 * 295.25112 * 19 18 17 43 43 H 1.09003 * 109.61971 * 298.55917 * 20 19 18 44 44 H 1.09002 * 109.62423 * 178.01763 * 20 19 18 45 45 H 0.96996 * 118.56169 * 325.15993 * 23 21 20 46 46 H 1.08997 * 109.24094 * 135.99653 * 26 24 23 47 47 H 1.09000 * 109.24317 * 255.43765 * 26 24 23 48 48 H 1.09000 * 109.73537 * 194.18318 * 27 26 24 49 49 H 1.09000 * 109.73967 * 73.47971 * 27 26 24 50 50 H 1.09001 * 109.59150 * 65.77355 * 30 18 17 51 51 H 1.09005 * 109.58729 * 305.34960 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3930 2.1245 -1.0850 5 6 2.3808 1.6743 -2.5232 6 6 1.0233 2.0017 -3.1486 7 6 1.0114 1.5521 -4.5868 8 1 1.8845 1.0797 -5.0122 9 6 -0.1145 1.7428 -5.3595 10 7 -0.1251 1.3501 -6.6145 11 14 -1.6249 2.5593 -4.6235 12 1 -1.5411 4.0282 -4.8246 13 1 -2.8445 2.0371 -5.2907 14 1 -1.6898 2.2615 -3.1701 15 7 2.7617 3.2941 -0.6450 16 7 2.6411 3.3420 0.6337 17 6 2.1943 2.1928 1.0827 18 7 1.9429 1.8669 2.4060 19 6 1.0108 2.8222 3.0147 20 6 0.6517 2.3770 4.4369 21 6 1.9381 2.2725 5.2534 22 1 2.4189 3.2507 5.2552 23 7 1.6836 1.8731 6.6273 24 6 2.5175 1.0927 7.3225 25 8 2.2572 0.8776 8.4874 26 6 3.7551 0.4660 6.7504 27 6 4.1369 1.1354 5.4261 28 6 2.8720 1.2656 4.5778 29 1 2.3763 0.2969 4.5148 30 6 3.1956 1.7599 3.1697 31 1 -0.3633 0.4091 -0.9427 32 1 -0.3633 -1.0209 0.1171 33 1 -0.3633 0.6119 0.8257 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.1679 2.1911 -3.0723 37 1 2.5520 0.5988 -2.5687 38 1 0.2362 1.4849 -2.5994 39 1 0.8523 3.0772 -3.1030 40 1 -0.9171 1.4846 -7.1581 41 1 0.1036 2.8753 2.4129 42 1 1.4781 3.8063 3.0514 43 1 0.1597 1.4049 4.4028 44 1 -0.0129 3.1106 4.8933 45 1 0.8736 2.1868 7.0589 46 1 4.5753 0.5786 7.4594 47 1 3.5734 -0.5947 6.5768 48 1 4.8702 0.5227 4.9019 49 1 4.5533 2.1239 5.6200 50 1 3.6737 2.7378 3.2265 51 1 3.8637 1.0523 2.6786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342846614.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:34 Heat of formation + Delta-G solvation = 11.795570 kcal Electronic energy + Delta-G solvation = -31474.931157 eV Core-core repulsion = 27408.888623 eV Total energy + Delta-G solvation = -4066.042535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.04326 -41.75987 -39.78757 -37.07651 -36.83464 -35.79027 -34.71191 -33.92961 -32.55573 -31.46520 -31.04480 -30.00942 -27.34248 -25.57911 -25.48383 -24.79865 -23.64569 -23.40691 -22.43805 -21.28764 -21.05891 -20.23513 -19.08222 -18.35160 -18.13265 -17.52849 -17.24945 -16.80262 -16.36763 -16.36617 -15.93531 -15.72841 -15.43402 -15.17711 -15.12772 -14.84437 -14.81930 -14.58585 -14.39007 -14.07271 -14.00197 -13.61917 -13.37629 -13.20353 -13.02052 -12.96912 -12.56619 -12.56227 -12.42759 -12.37374 -12.20041 -11.99522 -11.88271 -11.81626 -11.77228 -11.62565 -11.53279 -11.40518 -11.09181 -10.79531 -10.77787 -10.11249 -10.04988 -9.82557 -8.30166 -6.33655 0.69911 1.23961 1.32740 1.35381 1.44293 1.59350 1.75111 2.24378 2.33068 2.56848 3.05325 3.40680 3.43525 3.50347 3.55335 3.72425 3.75602 3.96268 3.99806 4.05592 4.09113 4.16466 4.27667 4.30520 4.36383 4.43433 4.47786 4.52852 4.57477 4.62187 4.64432 4.69498 4.72884 4.77717 4.80960 4.90039 4.91357 4.95705 5.08012 5.11544 5.14011 5.19187 5.32733 5.33642 5.46451 5.51958 5.64093 5.66172 5.81490 6.21402 6.24552 6.30902 6.73591 7.18376 7.30742 7.69491 8.85720 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.002323 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.758171 B =12049.868623 C =12340.732664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.458 5.458 4 C 0.201 3.799 5 C -0.012 4.012 6 C 0.006 3.994 7 C -0.524 4.524 8 H 0.048 0.952 9 C 0.015 3.985 10 N -0.943 5.943 11 Si 0.938 3.062 12 H -0.276 1.276 13 H -0.280 1.280 14 H -0.252 1.252 15 N -0.331 5.331 16 N -0.344 5.344 17 C 0.343 3.657 18 N -0.454 5.454 19 C 0.073 3.927 20 C -0.111 4.111 21 C 0.141 3.859 22 H 0.075 0.925 23 N -0.704 5.704 24 C 0.516 3.484 25 O -0.611 6.611 26 C -0.127 4.127 27 C -0.111 4.111 28 C -0.087 4.087 29 H 0.098 0.902 30 C 0.079 3.921 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.023 0.977 39 H 0.005 0.995 40 H 0.267 0.733 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.403 0.597 46 H 0.108 0.892 47 H 0.115 0.885 48 H 0.100 0.900 49 H 0.075 0.925 50 H 0.049 0.951 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.542 -4.445 27.742 28.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.151 5.151 4 C -0.068 4.068 5 C -0.052 4.052 6 C -0.033 4.033 7 C -0.562 4.562 8 H 0.066 0.934 9 C -0.183 4.183 10 N -0.583 5.583 11 Si 0.763 3.237 12 H -0.202 1.202 13 H -0.206 1.206 14 H -0.176 1.176 15 N -0.171 5.171 16 N -0.187 5.187 17 C -0.014 4.014 18 N -0.181 5.181 19 C -0.055 4.055 20 C -0.150 4.150 21 C 0.036 3.964 22 H 0.093 0.907 23 N -0.354 5.354 24 C 0.305 3.695 25 O -0.493 6.493 26 C -0.167 4.167 27 C -0.149 4.149 28 C -0.106 4.106 29 H 0.116 0.884 30 C -0.048 4.048 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.142 0.858 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.041 0.959 39 H 0.024 0.976 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.239 0.761 46 H 0.127 0.873 47 H 0.133 0.867 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.067 0.933 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.776 -3.695 28.099 28.741 hybrid contribution -1.296 0.244 -0.458 1.396 sum 3.480 -3.451 27.641 28.072 Atomic orbital electron populations 1.22113 0.93631 1.04574 1.01764 1.22157 0.96160 0.77056 1.06308 1.46635 1.48112 1.14876 1.05447 1.25229 0.99854 0.89008 0.92725 1.19967 1.00078 1.02020 0.83114 1.19391 0.93468 0.95939 0.94496 1.21300 1.00300 1.39091 0.95550 0.93376 1.25793 1.01782 0.95763 0.94970 1.70021 1.30743 1.49072 1.08503 0.85845 0.79164 0.78972 0.79750 1.20152 1.20586 1.17577 1.73977 1.21595 1.18018 1.03527 1.74424 1.20320 1.20072 1.03929 1.22400 1.02406 0.87391 0.89204 1.58561 1.15278 1.49788 0.94443 1.22055 0.95053 0.92954 0.95394 1.21821 0.96942 1.04280 0.91908 1.20920 0.96746 0.98382 0.80399 0.90661 1.45467 1.25259 1.50733 1.13902 1.20867 0.85735 0.77453 0.85415 1.90753 1.76247 1.62956 1.19366 1.21624 0.94542 1.02018 0.98505 1.21596 0.96927 1.02547 0.93804 1.21361 0.96915 1.00124 0.92250 0.88405 1.22124 0.88467 1.01542 0.92651 0.94232 0.87728 0.92084 0.87840 0.85797 0.89501 0.88611 0.95852 0.97623 0.92415 0.90889 0.93389 0.89459 0.88255 0.76095 0.87348 0.86659 0.88142 0.90608 0.93267 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 10.24 71.98 0.74 -2.50 16 2 C 0.10 2.02 6.79 86.38 0.59 2.61 16 3 N -0.46 -12.54 2.81 -514.85 -1.45 -13.99 16 4 C 0.20 6.98 7.32 137.64 1.01 7.99 16 5 C -0.01 -0.45 5.52 29.85 0.16 -0.28 16 6 C 0.01 0.25 4.02 29.85 0.12 0.37 16 7 C -0.52 -28.51 9.66 25.60 0.25 -28.26 16 8 H 0.05 2.81 7.99 -2.91 -0.02 2.79 16 9 C 0.01 0.83 5.47 84.66 0.46 1.30 16 10 N -0.94 -57.03 13.96 21.45 0.30 -56.74 16 11 Si 0.94 43.59 27.47 68.60 1.88 45.47 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 15 N -0.33 -12.92 12.18 -49.53 -0.60 -13.53 16 16 N -0.34 -11.77 12.11 -58.00 -0.70 -12.47 16 17 C 0.34 9.12 6.47 260.11 1.68 10.81 16 18 N -0.45 -7.98 4.64 -706.03 -3.27 -11.25 16 19 C 0.07 1.14 5.31 86.44 0.46 1.60 16 20 C -0.11 -0.99 5.79 30.60 0.18 -0.81 16 21 C 0.14 1.25 2.74 45.14 0.12 1.37 16 22 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 23 N -0.70 -7.87 5.26 -447.39 -2.35 -10.22 16 24 C 0.52 8.03 7.70 87.62 0.67 8.71 16 25 O -0.61 -15.48 17.78 -3.04 -0.05 -15.54 16 26 C -0.13 -1.09 5.98 29.72 0.18 -0.92 16 27 C -0.11 -0.67 5.46 30.62 0.17 -0.50 16 28 C -0.09 -0.72 2.06 -10.92 -0.02 -0.74 16 29 H 0.10 0.78 8.11 -2.39 -0.02 0.76 16 30 C 0.08 1.04 4.84 86.17 0.42 1.46 16 31 H 0.04 1.05 6.88 -2.39 -0.02 1.03 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.10 1.94 7.10 -2.39 -0.02 1.93 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.10 3.10 7.18 -2.38 -0.02 3.08 16 38 H 0.02 1.01 5.93 -2.39 -0.01 1.00 16 39 H 0.01 0.26 7.57 -2.39 -0.02 0.24 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 42 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 43 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.40 4.19 8.72 -92.71 -0.81 3.38 16 46 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.08 0.48 8.12 -2.39 -0.02 0.47 16 50 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.09 1.14 8.11 -2.38 -0.02 1.12 16 Total: -1.00 -76.78 402.14 1.00 -75.78 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.07 Total: 10.28 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 7.18 Total: 2.20 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -8.08 Total: -118.20 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.05 Total: -15.54 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -76.78 1.00 -75.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342846614.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.573 kcal (2) G-P(sol) polarization free energy of solvation -76.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds