Wall clock time and date at job start Wed Apr 1 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46827 * 124.35943 * 2 1 4 4 C 1.54588 * 105.49857 * 196.94307 * 3 2 1 5 5 C 1.54130 * 101.65030 * 335.02824 * 4 3 2 6 6 C 1.52547 * 110.07248 * 265.33732 * 5 4 3 7 7 C 1.53136 * 109.31893 * 181.90632 * 6 5 4 8 8 N 1.46855 * 109.46009 * 58.27376 * 7 6 5 9 9 C 1.38594 * 110.99993 * 173.66313 * 8 7 6 10 10 N 1.31216 * 126.47060 * 359.97438 * 9 8 7 11 11 N 1.28531 * 109.85750 * 179.97438 * 10 9 8 12 12 C 1.30300 * 110.05194 * 359.97438 * 11 10 9 13 13 C 1.50696 * 126.34211 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46969 * 90.02784 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47050 * 59.99579 * 19 17 15 21 21 H 1.48496 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46492 * 299.99554 * 19 17 15 23 23 N 1.36448 * 126.47141 * 180.28411 * 9 8 7 24 24 C 1.46503 * 127.13880 * 0.02562 * 23 9 8 25 25 C 1.46855 * 111.29177 * 297.82704 * 8 7 6 26 26 C 1.52537 * 110.08139 * 143.31698 * 5 4 3 27 27 C 1.34581 * 124.36211 * 180.02562 * 2 1 3 28 28 O 1.21282 * 125.03208 * 359.28547 * 27 2 1 29 29 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46844 * 300.00075 * 1 2 3 31 31 H 1.09003 * 109.47375 * 59.99774 * 1 2 3 32 32 H 1.09005 * 110.23878 * 315.94847 * 3 2 1 33 33 H 1.08995 * 110.23922 * 77.84833 * 3 2 1 34 34 H 1.08994 * 110.98966 * 216.93084 * 4 3 2 35 35 H 1.09002 * 110.98924 * 93.11654 * 4 3 2 36 36 H 1.08999 * 109.49445 * 61.95105 * 6 5 4 37 37 H 1.08996 * 109.51809 * 301.87613 * 6 5 4 38 38 H 1.09000 * 109.47999 * 298.27464 * 7 6 5 39 39 H 1.09005 * 109.47024 * 178.26642 * 7 6 5 40 40 H 1.09000 * 109.47664 * 330.02713 * 13 12 11 41 41 H 1.09002 * 109.46824 * 210.02184 * 13 12 11 42 42 H 1.09001 * 109.47671 * 59.99812 * 14 13 12 43 43 H 1.08998 * 109.47454 * 299.99809 * 14 13 12 44 44 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.46817 * 270.19661 * 24 23 9 46 46 H 1.08999 * 109.47004 * 30.19294 * 24 23 9 47 47 H 1.08997 * 109.47388 * 150.19420 * 24 23 9 48 48 H 1.08996 * 109.47070 * 182.17527 * 25 8 7 49 49 H 1.09003 * 109.47078 * 302.18722 * 25 8 7 50 50 H 1.09005 * 109.49608 * 298.04719 * 26 5 4 51 51 H 1.08996 * 109.49771 * 58.10610 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2936 1.2121 0.0000 4 6 3.7031 0.7488 -0.4341 5 6 3.6848 -0.7353 -0.0185 6 6 4.2993 -0.8982 1.3682 7 6 4.3158 -2.3827 1.7437 8 7 5.0800 -3.1331 0.7390 9 6 5.2361 -4.4565 1.1201 10 7 4.7818 -5.0103 2.2195 11 7 5.1089 -6.2529 2.2497 12 6 5.7852 -6.5631 1.1800 13 6 6.3480 -7.9193 0.8413 14 6 5.3114 -8.7182 0.0488 15 6 5.8744 -10.0743 -0.2906 16 1 6.8720 -10.3396 0.0269 17 6 5.1141 -10.9782 -1.0018 18 7 3.8973 -10.6570 -1.3837 19 14 5.8117 -12.6593 -1.4218 20 1 6.1497 -13.3820 -0.1694 21 1 4.8029 -13.4373 -2.1849 22 1 7.0369 -12.4952 -2.2448 23 7 5.8962 -5.4280 0.4257 24 6 6.5787 -5.2857 -0.8628 25 6 4.4556 -3.0375 -0.5868 26 6 4.4440 -1.5749 -1.0408 27 6 2.2246 -1.1110 -0.0005 28 8 1.7978 -2.2461 0.0114 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8996 1.9382 -0.7111 33 1 2.3287 1.6448 0.9997 34 1 4.4770 1.2957 0.1045 35 1 3.8331 0.8510 -1.5115 36 1 3.7059 -0.3453 2.0963 37 1 5.3190 -0.5131 1.3621 38 1 3.2938 -2.7600 1.7793 39 1 4.7826 -2.5051 2.7212 40 1 6.5916 -8.4517 1.7607 41 1 7.2500 -7.7988 0.2413 42 1 5.0678 -8.1859 -0.8707 43 1 4.4093 -8.8387 0.6486 44 1 3.3622 -11.2930 -1.8838 45 1 5.8759 -5.4899 -1.6706 46 1 6.9603 -4.2694 -0.9615 47 1 7.4075 -5.9916 -0.9150 48 1 5.0236 -3.6349 -1.2999 49 1 3.4325 -3.4097 -0.5342 50 1 3.9527 -1.4990 -2.0109 51 1 5.4681 -1.2106 -1.1223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351095163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:10 Heat of formation + Delta-G solvation = 54.107606 kcal Electronic energy + Delta-G solvation = -31689.191586 eV Core-core repulsion = 27624.983839 eV Total energy + Delta-G solvation = -4064.207747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52424 -41.52139 -38.24503 -36.80918 -34.80911 -34.63527 -33.61136 -31.68981 -31.26691 -30.40931 -28.24432 -27.37870 -27.26471 -25.66322 -25.06932 -23.70710 -22.19121 -21.71229 -21.59841 -20.59245 -19.76630 -18.92594 -17.31037 -16.80749 -16.64017 -16.42382 -15.91728 -15.87308 -15.30703 -15.03850 -14.77814 -14.46778 -14.18958 -14.12398 -13.98795 -13.57157 -13.38416 -13.08728 -12.97145 -12.89126 -12.81574 -12.61730 -12.52253 -12.37238 -12.32467 -12.16114 -11.91794 -11.41284 -11.27381 -11.01117 -10.93433 -10.77612 -10.69599 -10.66276 -10.30725 -10.04743 -9.81122 -9.68709 -9.66212 -9.21742 -9.11448 -9.07751 -8.36747 -7.75727 -6.00849 -4.05229 2.23482 2.30853 2.63057 2.68243 3.33477 3.37022 3.38542 3.41594 3.75673 3.91446 3.95750 4.18945 4.42438 4.44650 4.57479 4.69913 4.80519 4.90003 4.93664 5.00125 5.06248 5.08502 5.15728 5.18169 5.26252 5.29714 5.31167 5.34721 5.36571 5.38461 5.46969 5.49413 5.53321 5.62073 5.65075 5.75780 5.86088 5.92857 6.03094 6.16016 6.31333 6.43454 6.54345 6.74487 6.74946 6.82457 7.04779 7.54304 7.61130 7.75682 7.90964 7.96908 8.34321 9.00925 9.34414 9.59029 11.10204 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002363 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.143245 B =11847.647620 C =12400.649252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.628 5.628 3 C 0.103 3.897 4 C -0.124 4.124 5 C -0.095 4.095 6 C -0.093 4.093 7 C 0.068 3.932 8 N -0.445 5.445 9 C 0.340 3.660 10 N -0.324 5.324 11 N -0.296 5.296 12 C 0.209 3.791 13 C -0.029 4.029 14 C 0.032 3.968 15 C -0.524 4.524 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.277 1.277 23 N -0.484 5.484 24 C 0.078 3.922 25 C 0.034 3.966 26 C -0.089 4.089 27 C 0.523 3.477 28 O -0.512 6.512 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.013 0.987 43 H 0.025 0.975 44 H 0.262 0.738 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.465 30.885 -1.338 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.363 5.363 3 C -0.020 4.020 4 C -0.162 4.162 5 C -0.099 4.099 6 C -0.132 4.132 7 C -0.059 4.059 8 N -0.168 5.168 9 C -0.016 4.016 10 N -0.169 5.169 11 N -0.134 5.134 12 C -0.058 4.058 13 C -0.069 4.069 14 C -0.006 4.006 15 C -0.562 4.562 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 N -0.179 5.179 24 C -0.065 4.065 25 C -0.093 4.093 26 C -0.127 4.127 27 C 0.310 3.690 28 O -0.386 6.386 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.032 0.968 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.094 0.906 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.264 30.308 -0.132 30.309 hybrid contribution 0.092 -0.899 -1.633 1.867 sum -0.172 29.409 -1.765 29.462 Atomic orbital electron populations 1.21567 0.78028 1.03976 1.01349 1.48221 1.06479 1.07316 1.74268 1.22106 0.90644 0.87360 1.01924 1.22705 0.96626 0.94091 1.02787 1.21107 0.93473 0.96568 0.98710 1.21498 1.01784 0.96412 0.93461 1.22043 0.97886 0.91507 0.94487 1.58640 1.49873 1.03858 1.04479 1.22423 0.98474 0.88207 0.92538 1.74496 1.22141 1.02153 1.18088 1.73976 1.14734 1.05461 1.19198 1.25500 1.00756 0.90504 0.89062 1.20410 0.99406 0.84933 1.02162 1.19060 0.93535 0.93738 0.94289 1.21113 1.00951 0.98930 1.35234 0.92350 1.25018 0.94804 0.98626 0.95848 1.69971 1.09091 1.35844 1.38187 0.86616 0.78609 0.83974 0.78558 1.20084 1.21314 1.20225 1.46025 1.43229 1.09007 1.19660 1.22059 0.98220 1.03940 0.82314 1.22580 1.00626 0.97479 0.88575 1.21401 1.00810 0.93529 0.96935 1.20701 0.88692 0.84473 0.75111 1.90748 1.78209 1.20644 1.49035 0.89800 0.92091 0.92128 0.90364 0.90990 0.88641 0.89607 0.90514 0.89404 0.91985 0.89020 0.89373 0.91331 0.96836 0.95644 0.92833 0.90321 0.89493 0.88784 0.90145 0.90550 0.90634 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.15 59.84 0.67 1.31 16 2 N -0.63 -5.18 3.34 -180.33 -0.60 -5.78 16 3 C 0.10 0.47 7.36 -3.03 -0.02 0.45 16 4 C -0.12 -0.55 6.21 -25.31 -0.16 -0.70 16 5 C -0.09 -0.78 0.55 -155.50 -0.09 -0.86 16 6 C -0.09 -0.79 4.77 -26.89 -0.13 -0.92 16 7 C 0.07 0.89 4.67 -3.78 -0.02 0.88 16 8 N -0.44 -6.34 4.69 -174.41 -0.82 -7.16 16 9 C 0.34 6.27 7.21 -318.86 -2.30 3.97 16 10 N -0.32 -7.05 11.23 30.32 0.34 -6.71 16 11 N -0.30 -6.92 12.18 32.99 0.40 -6.51 16 12 C 0.21 4.46 7.32 -154.02 -1.13 3.33 16 13 C -0.03 -0.62 5.53 -27.89 -0.15 -0.78 16 14 C 0.03 0.84 4.96 -27.88 -0.14 0.71 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 N -0.48 -8.75 3.21 -121.46 -0.39 -9.14 16 24 C 0.08 1.03 9.28 59.85 0.56 1.58 16 25 C 0.03 0.44 5.05 -3.77 -0.02 0.42 16 26 C -0.09 -0.78 4.77 -26.89 -0.13 -0.90 16 27 C 0.52 5.91 6.33 -11.03 -0.07 5.84 16 28 O -0.51 -8.23 13.60 5.56 0.08 -8.16 16 29 H 0.08 0.76 7.54 -51.93 -0.39 0.37 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.10 0.25 7.86 -51.93 -0.41 -0.16 16 35 H 0.09 0.31 7.89 -51.93 -0.41 -0.10 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.01 6.68 -51.93 -0.35 0.66 16 39 H 0.09 1.26 7.90 -51.93 -0.41 0.85 16 40 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 41 H 0.07 1.29 7.26 -51.93 -0.38 0.91 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 45 H 0.08 1.02 7.73 -51.93 -0.40 0.62 16 46 H 0.09 0.90 7.67 -51.93 -0.40 0.51 16 47 H 0.09 1.15 7.24 -51.93 -0.38 0.77 16 48 H 0.08 0.98 5.21 -51.93 -0.27 0.71 16 49 H 0.08 1.26 5.78 -51.93 -0.30 0.96 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -37.72 396.50 -11.12 -48.84 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.28 Total: -2.42 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -3.54 Total: 0.94 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.33 Total: -61.75 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.08 Total: -8.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.72 -11.12 -48.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351095163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.949 kcal (2) G-P(sol) polarization free energy of solvation -37.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds