Wall clock time and date at job start Wed Apr 1 2020 06:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46827 * 124.35943 * 2 1 4 4 C 1.54588 * 105.49857 * 196.94307 * 3 2 1 5 5 C 1.54130 * 101.65030 * 335.02824 * 4 3 2 6 6 C 1.52547 * 110.07248 * 265.33732 * 5 4 3 7 7 C 1.53136 * 109.31893 * 181.90632 * 6 5 4 8 8 N 1.46855 * 109.46009 * 58.27376 * 7 6 5 9 9 C 1.38594 * 110.99993 * 173.66313 * 8 7 6 10 10 N 1.31216 * 126.47060 * 359.97438 * 9 8 7 11 11 N 1.28531 * 109.85750 * 179.97438 * 10 9 8 12 12 C 1.30300 * 110.05194 * 359.97438 * 11 10 9 13 13 C 1.50696 * 126.34211 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.46969 * 90.02784 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47050 * 59.99579 * 19 17 15 21 21 H 1.48496 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46492 * 299.99554 * 19 17 15 23 23 N 1.36448 * 126.47141 * 180.28411 * 9 8 7 24 24 C 1.46503 * 127.13880 * 0.02562 * 23 9 8 25 25 C 1.46855 * 111.29177 * 297.82704 * 8 7 6 26 26 C 1.52537 * 110.08139 * 143.31698 * 5 4 3 27 27 C 1.34581 * 124.36211 * 180.02562 * 2 1 3 28 28 O 1.21282 * 125.03208 * 359.28547 * 27 2 1 29 29 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46844 * 300.00075 * 1 2 3 31 31 H 1.09003 * 109.47375 * 59.99774 * 1 2 3 32 32 H 1.09005 * 110.23878 * 315.94847 * 3 2 1 33 33 H 1.08995 * 110.23922 * 77.84833 * 3 2 1 34 34 H 1.08994 * 110.98966 * 216.93084 * 4 3 2 35 35 H 1.09002 * 110.98924 * 93.11654 * 4 3 2 36 36 H 1.08999 * 109.49445 * 61.95105 * 6 5 4 37 37 H 1.08996 * 109.51809 * 301.87613 * 6 5 4 38 38 H 1.09000 * 109.47999 * 298.27464 * 7 6 5 39 39 H 1.09005 * 109.47024 * 178.26642 * 7 6 5 40 40 H 1.09000 * 109.47664 * 330.02713 * 13 12 11 41 41 H 1.09002 * 109.46824 * 210.02184 * 13 12 11 42 42 H 1.09001 * 109.47671 * 59.99812 * 14 13 12 43 43 H 1.08998 * 109.47454 * 299.99809 * 14 13 12 44 44 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.46817 * 270.19661 * 24 23 9 46 46 H 1.08999 * 109.47004 * 30.19294 * 24 23 9 47 47 H 1.08997 * 109.47388 * 150.19420 * 24 23 9 48 48 H 1.08996 * 109.47070 * 182.17527 * 25 8 7 49 49 H 1.09003 * 109.47078 * 302.18722 * 25 8 7 50 50 H 1.09005 * 109.49608 * 298.04719 * 26 5 4 51 51 H 1.08996 * 109.49771 * 58.10610 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2936 1.2121 0.0000 4 6 3.7031 0.7488 -0.4341 5 6 3.6848 -0.7353 -0.0185 6 6 4.2993 -0.8982 1.3682 7 6 4.3158 -2.3827 1.7437 8 7 5.0800 -3.1331 0.7390 9 6 5.2361 -4.4565 1.1201 10 7 4.7818 -5.0103 2.2195 11 7 5.1089 -6.2529 2.2497 12 6 5.7852 -6.5631 1.1800 13 6 6.3480 -7.9193 0.8413 14 6 5.3114 -8.7182 0.0488 15 6 5.8744 -10.0743 -0.2906 16 1 6.8720 -10.3396 0.0269 17 6 5.1141 -10.9782 -1.0018 18 7 3.8973 -10.6570 -1.3837 19 14 5.8117 -12.6593 -1.4218 20 1 6.1497 -13.3820 -0.1694 21 1 4.8029 -13.4373 -2.1849 22 1 7.0369 -12.4952 -2.2448 23 7 5.8962 -5.4280 0.4257 24 6 6.5787 -5.2857 -0.8628 25 6 4.4556 -3.0375 -0.5868 26 6 4.4440 -1.5749 -1.0408 27 6 2.2246 -1.1110 -0.0005 28 8 1.7978 -2.2461 0.0114 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8996 1.9382 -0.7111 33 1 2.3287 1.6448 0.9997 34 1 4.4770 1.2957 0.1045 35 1 3.8331 0.8510 -1.5115 36 1 3.7059 -0.3453 2.0963 37 1 5.3190 -0.5131 1.3621 38 1 3.2938 -2.7600 1.7793 39 1 4.7826 -2.5051 2.7212 40 1 6.5916 -8.4517 1.7607 41 1 7.2500 -7.7988 0.2413 42 1 5.0678 -8.1859 -0.8707 43 1 4.4093 -8.8387 0.6486 44 1 3.3622 -11.2930 -1.8838 45 1 5.8759 -5.4899 -1.6706 46 1 6.9603 -4.2694 -0.9615 47 1 7.4075 -5.9916 -0.9150 48 1 5.0236 -3.6349 -1.2999 49 1 3.4325 -3.4097 -0.5342 50 1 3.9527 -1.4990 -2.0109 51 1 5.4681 -1.2106 -1.1223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351095163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:09 Heat of formation + Delta-G solvation = 29.706757 kcal Electronic energy + Delta-G solvation = -31690.249686 eV Core-core repulsion = 27624.983839 eV Total energy + Delta-G solvation = -4065.265847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.03935 -42.27579 -39.25896 -37.61267 -36.43127 -35.87097 -35.11233 -33.53202 -32.16347 -31.30878 -29.77120 -28.56851 -27.91972 -27.22840 -26.25007 -24.75048 -23.58806 -23.09028 -22.28153 -21.83605 -21.37655 -19.69142 -18.71764 -18.36152 -17.60278 -17.40833 -17.31765 -17.05887 -16.51137 -16.18317 -16.03004 -15.71724 -15.20625 -14.99598 -14.92881 -14.71974 -14.62946 -14.36625 -14.20103 -14.15290 -13.73568 -13.59464 -13.37634 -13.33118 -13.28136 -13.10642 -12.85467 -12.82500 -12.69369 -12.49933 -12.42016 -12.22483 -12.03319 -11.84852 -11.56742 -11.52749 -11.42581 -11.34990 -11.14048 -10.88984 -10.58335 -10.40721 -9.69262 -9.26846 -8.21323 -6.34804 0.73330 1.28364 1.41882 1.46191 1.51976 1.53650 1.76803 2.07972 2.41294 2.61198 3.12570 3.23597 3.38128 3.47745 3.57432 3.73906 3.83335 3.89348 3.96506 4.08546 4.20675 4.22494 4.27142 4.33446 4.37819 4.41553 4.48856 4.51424 4.58545 4.63534 4.66453 4.67245 4.72706 4.76797 4.81412 4.83416 4.87491 4.93307 5.03977 5.06031 5.07231 5.22145 5.23554 5.41634 5.47924 5.56293 5.60837 5.66354 5.76393 6.10308 6.12087 6.16987 6.81416 7.16313 7.35592 7.73769 8.90837 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.002363 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.143245 B =11847.647620 C =12400.649252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.627 5.627 3 C 0.095 3.905 4 C -0.110 4.110 5 C -0.095 4.095 6 C -0.082 4.082 7 C 0.067 3.933 8 N -0.424 5.424 9 C 0.351 3.649 10 N -0.365 5.365 11 N -0.336 5.336 12 C 0.195 3.805 13 C -0.012 4.012 14 C 0.043 3.957 15 C -0.539 4.539 16 H 0.076 0.924 17 C -0.002 4.002 18 N -0.938 5.938 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.258 1.258 23 N -0.481 5.481 24 C 0.068 3.932 25 C 0.033 3.967 26 C -0.081 4.081 27 C 0.505 3.495 28 O -0.578 6.578 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.020 0.980 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.101 0.899 42 H -0.008 1.008 43 H -0.023 1.023 44 H 0.263 0.737 45 H 0.078 0.922 46 H 0.122 0.878 47 H 0.109 0.891 48 H 0.087 0.913 49 H 0.032 0.968 50 H 0.084 0.916 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 34.140 -2.874 34.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.361 5.361 3 C -0.026 4.026 4 C -0.147 4.147 5 C -0.098 4.098 6 C -0.120 4.120 7 C -0.060 4.060 8 N -0.148 5.148 9 C -0.007 4.007 10 N -0.210 5.210 11 N -0.174 5.174 12 C -0.075 4.075 13 C -0.052 4.052 14 C 0.005 3.995 15 C -0.576 4.576 16 H 0.094 0.906 17 C -0.200 4.200 18 N -0.578 5.578 19 Si 0.796 3.204 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.182 1.182 23 N -0.176 5.176 24 C -0.073 4.073 25 C -0.094 4.094 26 C -0.119 4.119 27 C 0.294 3.706 28 O -0.458 6.458 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.039 0.961 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.120 0.880 42 H 0.011 0.989 43 H -0.005 1.005 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.141 0.859 47 H 0.127 0.873 48 H 0.105 0.895 49 H 0.051 0.949 50 H 0.102 0.898 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.684 33.642 -1.681 33.791 hybrid contribution -0.941 -1.800 -1.156 2.337 sum 1.743 31.841 -2.837 32.015 Atomic orbital electron populations 1.21649 0.77930 1.02479 1.03343 1.48486 1.07065 1.08046 1.72464 1.22463 0.90281 0.86063 1.03771 1.22775 0.97230 0.90513 1.04210 1.21159 0.90899 0.99439 0.98312 1.21526 1.03952 0.92384 0.94134 1.22106 0.95104 0.94709 0.94117 1.58925 1.49506 1.01052 1.05365 1.22964 0.96587 0.89644 0.91500 1.74385 1.24036 1.01962 1.20601 1.73850 1.15814 1.06653 1.21072 1.25352 1.01202 0.91367 0.89564 1.20143 0.98818 0.84410 1.01815 1.18828 0.93125 0.94420 0.93140 1.21573 1.01717 0.99471 1.34889 0.90609 1.26069 0.94978 1.03329 0.95617 1.70144 1.10863 1.37546 1.39230 0.85396 0.78230 0.78148 0.78648 1.19184 1.21382 1.18207 1.46208 1.42964 1.07781 1.20624 1.22468 0.98285 1.06677 0.79886 1.22666 0.97953 1.01064 0.87723 1.21461 1.02959 0.90221 0.97268 1.21432 0.90625 0.84133 0.74453 1.90725 1.79549 1.23393 1.52126 0.93081 0.90261 0.89870 0.87934 0.89320 0.85499 0.88083 0.89044 0.86273 0.96126 0.90145 0.89331 0.88044 0.98945 1.00482 0.92825 0.90367 0.85937 0.87301 0.89509 0.94943 0.89766 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 11.15 127.77 1.42 2.62 16 2 N -0.63 -9.52 3.34 -842.95 -2.81 -12.34 16 3 C 0.10 0.48 7.36 86.86 0.64 1.12 16 4 C -0.11 -0.40 6.21 31.52 0.20 -0.20 16 5 C -0.09 -1.31 0.55 -52.82 -0.03 -1.34 16 6 C -0.08 -1.20 4.77 30.49 0.15 -1.05 16 7 C 0.07 1.81 4.67 86.36 0.40 2.21 16 8 N -0.42 -12.11 4.69 -705.71 -3.31 -15.41 16 9 C 0.35 13.40 7.21 260.11 1.88 15.28 16 10 N -0.37 -16.94 11.23 -58.00 -0.65 -17.59 16 11 N -0.34 -16.69 12.18 -49.54 -0.60 -17.29 16 12 C 0.19 8.61 7.32 137.64 1.01 9.61 16 13 C -0.01 -0.53 5.53 29.85 0.17 -0.37 16 14 C 0.04 2.38 4.96 29.85 0.15 2.53 16 15 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 16 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 17 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 18 N -0.94 -59.01 13.29 21.45 0.28 -58.72 16 19 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 N -0.48 -17.67 3.21 -538.17 -1.73 -19.40 16 24 C 0.07 1.70 9.28 127.77 1.19 2.89 16 25 C 0.03 0.84 5.05 86.36 0.44 1.28 16 26 C -0.08 -1.21 4.77 30.49 0.15 -1.07 16 27 C 0.50 11.49 6.33 87.71 0.56 12.05 16 28 O -0.58 -20.43 13.60 -3.04 -0.04 -20.47 16 29 H 0.05 1.04 7.54 -2.39 -0.02 1.02 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.09 8.14 -2.38 -0.02 0.07 16 33 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.13 -0.22 7.86 -2.39 -0.02 -0.24 16 35 H 0.10 0.15 7.89 -2.39 -0.02 0.13 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.02 0.73 6.68 -2.39 -0.02 0.72 16 39 H 0.08 2.31 7.90 -2.38 -0.02 2.29 16 40 H 0.09 3.82 8.14 -2.39 -0.02 3.80 16 41 H 0.10 3.70 7.26 -2.39 -0.02 3.68 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 43 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 44 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 45 H 0.08 1.99 7.73 -2.39 -0.02 1.97 16 46 H 0.12 2.18 7.67 -2.39 -0.02 2.16 16 47 H 0.11 2.43 7.24 -2.39 -0.02 2.41 16 48 H 0.09 2.06 5.21 -2.39 -0.01 2.05 16 49 H 0.03 1.16 5.78 -2.39 -0.01 1.15 16 50 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 51 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -91.99 396.50 3.09 -88.90 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.93 Total: 10.34 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 8.99 Total: 15.64 kcal Atomic # 7 Polarization: -131.94 SS G_CDS: -8.82 Total: -140.76 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.04 Total: -20.47 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -91.99 3.09 -88.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351095163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.610 kcal (2) G-P(sol) polarization free energy of solvation -91.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds