Wall clock time and date at job start Wed Apr 1 2020 05:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99857 * 2 1 4 4 N 1.46497 * 109.46947 * 125.22893 * 3 2 1 5 5 C 1.36745 * 127.14187 * 268.57638 * 4 3 2 6 6 C 1.50702 * 126.34499 * 0.03706 * 5 4 3 7 7 C 1.52997 * 109.46994 * 270.25142 * 6 5 4 8 8 C 1.53000 * 109.47473 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47467 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99969 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99991 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99735 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00053 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46955 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46810 * 120.00150 * 13 11 9 16 16 H 1.48495 * 109.47326 * 240.00591 * 13 11 9 17 17 N 1.30293 * 107.30700 * 180.22713 * 5 4 3 18 18 N 1.28527 * 110.05420 * 359.77279 * 17 5 4 19 19 C 1.31217 * 109.86198 * 359.97438 * 18 17 5 20 20 N 1.38579 * 126.47399 * 179.97438 * 19 18 17 21 21 C 1.46894 * 111.00244 * 297.33390 * 20 19 18 22 22 C 1.53236 * 109.34133 * 187.25206 * 21 20 19 23 23 N 1.47075 * 108.52382 * 306.17177 * 22 21 20 24 24 C 1.34776 * 120.88611 * 231.18877 * 23 22 21 25 25 C 1.50701 * 120.00279 * 180.02562 * 24 23 22 26 26 O 1.21280 * 120.00016 * 359.97438 * 24 23 22 27 27 C 1.47083 * 118.23336 * 51.45656 * 23 22 21 28 28 C 1.46901 * 110.99777 * 61.64061 * 20 19 18 29 29 H 1.08004 * 120.00584 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.00061 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00299 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47373 * 5.23746 * 3 2 1 33 33 H 1.08995 * 109.47798 * 245.23063 * 3 2 1 34 34 H 1.08995 * 109.46964 * 30.24790 * 6 5 4 35 35 H 1.08991 * 109.47488 * 150.24901 * 6 5 4 36 36 H 1.09002 * 109.47567 * 299.99922 * 7 6 5 37 37 H 1.09001 * 109.47353 * 59.99589 * 7 6 5 38 38 H 1.09008 * 109.46955 * 299.99838 * 8 7 6 39 39 H 1.09001 * 109.47209 * 59.99449 * 8 7 6 40 40 H 0.97005 * 119.99712 * 179.97438 * 12 11 9 41 41 H 1.09008 * 109.49241 * 67.29698 * 21 20 19 42 42 H 1.08995 * 109.52009 * 307.23240 * 21 20 19 43 43 H 1.09003 * 109.62831 * 186.46488 * 22 21 20 44 44 H 1.08993 * 109.62689 * 65.88634 * 22 21 20 45 45 H 1.08994 * 109.47113 * 269.99674 * 25 24 23 46 46 H 1.09000 * 109.47227 * 29.99808 * 25 24 23 47 47 H 1.09000 * 109.47090 * 149.99766 * 25 24 23 48 48 H 1.08996 * 109.62994 * 68.25550 * 27 23 22 49 49 H 1.09003 * 109.62785 * 188.83006 * 27 23 22 50 50 H 1.08997 * 109.49406 * 292.70342 * 28 20 19 51 51 H 1.08994 * 109.49360 * 52.75923 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9975 1.3296 1.1282 5 6 2.7614 1.8132 2.3853 6 6 1.4771 2.4280 2.8791 7 6 1.5041 3.9368 2.6270 8 6 0.2005 4.5612 3.1288 9 6 0.2273 6.0474 2.8810 10 1 1.0879 6.5012 2.4121 11 6 -0.8473 6.8277 3.2520 12 7 -1.8953 6.2749 3.8226 13 14 -0.8138 8.6700 2.9456 14 1 0.4693 9.0405 2.2961 15 1 -1.9437 9.0447 2.0578 16 1 -0.9404 9.3893 4.2385 17 7 3.8538 1.6477 3.0759 18 7 4.7556 1.0923 2.3477 19 6 4.2828 0.8715 1.1437 20 7 4.9625 0.2891 0.0858 21 6 6.1208 1.1025 -0.3074 22 6 6.7357 0.5250 -1.5867 23 7 7.0233 -0.9002 -1.3647 24 6 8.2408 -1.4107 -1.6356 25 6 8.5135 -2.8742 -1.4012 26 8 9.1168 -0.6925 -2.0689 27 6 5.9450 -1.7549 -0.8449 28 6 5.3630 -1.0864 0.4108 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3588 2.1315 0.0938 33 1 2.6180 1.4046 -0.9330 34 1 0.6347 1.9858 2.3474 35 1 1.3715 2.2400 3.9475 36 1 2.3465 4.3792 3.1587 37 1 1.6097 4.1249 1.5585 38 1 -0.6423 4.1190 2.5974 39 1 0.0953 4.3732 4.1973 40 1 -2.6511 6.8239 4.0840 41 1 6.8628 1.0889 0.4910 42 1 5.8006 2.1284 -0.4888 43 1 7.6604 1.0531 -1.8192 44 1 6.0320 0.6323 -2.4120 45 1 8.8809 -3.0171 -0.3850 46 1 7.5931 -3.4418 -1.5380 47 1 9.2639 -3.2222 -2.1111 48 1 5.1667 -1.8625 -1.6003 49 1 6.3466 -2.7348 -0.5868 50 1 6.1154 -1.0696 1.1992 51 1 4.4927 -1.6479 0.7504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351993885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:15 Heat of formation + Delta-G solvation = 70.304881 kcal Electronic energy + Delta-G solvation = -30746.399487 eV Core-core repulsion = 26682.894107 eV Total energy + Delta-G solvation = -4063.505380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.96217 -40.55830 -38.40312 -36.34183 -35.34195 -34.62694 -32.87284 -32.42178 -32.12064 -30.42284 -29.64596 -27.82406 -26.76612 -26.46254 -24.23713 -23.76537 -22.66859 -21.31562 -20.99770 -20.24830 -20.04300 -19.27615 -17.93775 -17.09043 -16.64017 -16.30972 -16.17201 -16.13402 -15.96080 -15.37683 -14.94899 -14.77118 -14.55451 -14.20942 -14.03481 -13.99990 -13.77240 -13.56202 -13.33911 -12.63724 -12.58516 -12.47588 -12.37225 -12.16293 -11.97148 -11.87111 -11.76566 -11.73226 -11.59382 -11.41751 -10.92120 -10.83464 -10.66194 -10.53752 -10.22634 -10.10422 -9.87114 -9.77496 -9.54947 -9.36948 -9.19458 -8.95549 -8.75503 -8.39755 -6.04777 -4.06978 1.64004 1.77980 2.19975 2.32567 2.56712 2.91493 3.28395 3.36412 3.40598 3.43691 4.06492 4.28229 4.41382 4.45035 4.47254 4.54704 4.59255 4.63087 4.72901 4.76237 4.84091 4.91990 4.96890 5.00272 5.04599 5.17604 5.26085 5.31553 5.31978 5.36165 5.39383 5.44760 5.57541 5.63410 5.78657 5.85220 5.94208 5.96487 6.07706 6.25019 6.27790 6.34455 6.54659 6.56039 6.70393 6.92363 6.98199 7.14180 7.60387 7.72825 7.73134 7.94338 8.36678 8.82130 8.99697 9.57493 11.06413 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.002129 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.682386 B =13149.703200 C =13754.382422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.180 4.180 3 C 0.139 3.861 4 N -0.458 5.458 5 C 0.214 3.786 6 C -0.037 4.037 7 C -0.103 4.103 8 C 0.023 3.977 9 C -0.520 4.520 10 H 0.055 0.945 11 C 0.057 3.943 12 N -0.894 5.894 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.292 5.292 18 N -0.309 5.309 19 C 0.323 3.677 20 N -0.459 5.459 21 C 0.052 3.948 22 C 0.118 3.882 23 N -0.617 5.617 24 C 0.514 3.486 25 C -0.176 4.176 26 O -0.546 6.546 27 C 0.112 3.888 28 C 0.053 3.947 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.017 0.983 39 H 0.020 0.980 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.060 0.940 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.905 -22.095 -13.179 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.199 4.199 3 C 0.017 3.983 4 N -0.150 5.150 5 C -0.053 4.053 6 C -0.077 4.077 7 C -0.141 4.141 8 C -0.014 4.014 9 C -0.559 4.559 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.132 5.132 18 N -0.153 5.153 19 C -0.033 4.033 20 N -0.184 5.184 21 C -0.076 4.076 22 C -0.005 4.005 23 N -0.352 5.352 24 C 0.303 3.697 25 C -0.235 4.235 26 O -0.423 6.423 27 C -0.011 4.011 28 C -0.075 4.075 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.112 0.888 48 H 0.100 0.900 49 H 0.116 0.884 50 H 0.078 0.922 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.882 -21.662 -12.602 28.178 hybrid contribution -0.656 0.971 -0.588 1.311 sum 12.226 -20.691 -13.190 27.415 Atomic orbital electron populations 1.24066 0.95578 1.02971 0.96867 1.22973 0.96142 0.97727 1.03064 1.20972 0.91739 0.97613 0.88009 1.46368 1.11255 1.45379 1.12019 1.25383 0.99735 0.99230 0.81002 1.20392 0.87453 0.97406 1.02463 1.21661 1.02170 0.89983 1.00325 1.19101 0.90393 0.95187 0.96732 1.21249 1.02283 0.92767 1.39564 0.92681 1.25010 0.95565 0.98632 0.95194 1.69965 1.06434 1.35513 1.41447 0.86553 0.77965 0.85634 0.77968 1.19763 1.21027 1.20943 1.74093 0.97571 1.16385 1.25172 1.74542 1.23981 1.16288 1.00454 1.22072 0.85055 1.03654 0.92536 1.58488 1.25599 1.02690 1.31669 1.22566 0.90433 0.97087 0.97476 1.21723 1.01477 0.80766 0.96499 1.48248 1.11586 1.10012 1.65316 1.20841 0.81182 0.90842 0.76789 1.21971 1.04175 0.92313 1.05082 1.90728 1.44317 1.61908 1.45397 1.22051 0.89794 0.93861 0.95419 1.22602 1.00834 0.87057 0.97053 0.87484 0.87704 0.87009 0.87741 0.87664 0.90305 0.88395 0.92399 0.93617 0.96493 0.96125 0.93022 0.92244 0.89109 0.87984 0.90389 0.88656 0.89858 0.88783 0.90028 0.88367 0.92168 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 14.32 29.02 0.42 -0.87 16 2 C -0.18 -1.58 9.85 -36.02 -0.35 -1.93 16 3 C 0.14 1.41 6.35 -5.20 -0.03 1.38 16 4 N -0.46 -6.11 2.79 -115.37 -0.32 -6.43 16 5 C 0.21 3.45 7.32 -154.01 -1.13 2.32 16 6 C -0.04 -0.61 5.40 -27.88 -0.15 -0.76 16 7 C -0.10 -2.02 5.13 -26.73 -0.14 -2.15 16 8 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 9 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 13 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 17 N -0.29 -5.37 12.18 32.99 0.40 -4.97 16 18 N -0.31 -5.19 12.19 30.32 0.37 -4.82 16 19 C 0.32 4.34 6.40 -318.87 -2.04 2.30 16 20 N -0.46 -4.53 4.64 -173.94 -0.81 -5.34 16 21 C 0.05 0.51 5.54 -3.71 -0.02 0.49 16 22 C 0.12 0.97 6.60 -3.61 -0.02 0.95 16 23 N -0.62 -4.68 3.00 -172.19 -0.52 -5.19 16 24 C 0.51 4.54 7.82 -10.99 -0.09 4.46 16 25 C -0.18 -0.81 9.45 36.01 0.34 -0.47 16 26 O -0.55 -7.23 16.55 5.56 0.09 -7.14 16 27 C 0.11 0.57 6.39 -3.36 -0.02 0.55 16 28 C 0.05 0.41 5.55 -3.46 -0.02 0.39 16 29 H 0.11 0.91 7.84 -52.48 -0.41 0.50 16 30 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.10 1.10 7.46 -51.93 -0.39 0.71 16 33 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.14 7.89 -51.93 -0.41 0.73 16 35 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 41 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.10 0.95 7.06 -51.93 -0.37 0.59 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.18 6.25 -51.93 -0.32 -0.14 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.10 0.25 5.63 -51.93 -0.29 -0.04 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 419.33 15.07 6.32 6.32 Total: -1.00 -35.21 419.33 -11.05 -46.26 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.49 Total: -3.50 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.81 Total: -6.09 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.14 Total: -52.20 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.09 Total: -7.14 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.21 -11.05 -46.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351993885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.564 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds