Wall clock time and date at job start Wed Apr 1 2020 05:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50700 * 119.99857 * 2 1 4 4 N 1.46497 * 109.46947 * 125.22893 * 3 2 1 5 5 C 1.36745 * 127.14187 * 268.57638 * 4 3 2 6 6 C 1.50702 * 126.34499 * 0.03706 * 5 4 3 7 7 C 1.52997 * 109.46994 * 270.25142 * 6 5 4 8 8 C 1.53000 * 109.47473 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47467 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99969 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99991 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99735 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00053 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46955 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46810 * 120.00150 * 13 11 9 16 16 H 1.48495 * 109.47326 * 240.00591 * 13 11 9 17 17 N 1.30293 * 107.30700 * 180.22713 * 5 4 3 18 18 N 1.28527 * 110.05420 * 359.77279 * 17 5 4 19 19 C 1.31217 * 109.86198 * 359.97438 * 18 17 5 20 20 N 1.38579 * 126.47399 * 179.97438 * 19 18 17 21 21 C 1.46894 * 111.00244 * 297.33390 * 20 19 18 22 22 C 1.53236 * 109.34133 * 187.25206 * 21 20 19 23 23 N 1.47075 * 108.52382 * 306.17177 * 22 21 20 24 24 C 1.34776 * 120.88611 * 231.18877 * 23 22 21 25 25 C 1.50701 * 120.00279 * 180.02562 * 24 23 22 26 26 O 1.21280 * 120.00016 * 359.97438 * 24 23 22 27 27 C 1.47083 * 118.23336 * 51.45656 * 23 22 21 28 28 C 1.46901 * 110.99777 * 61.64061 * 20 19 18 29 29 H 1.08004 * 120.00584 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.00061 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00299 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47373 * 5.23746 * 3 2 1 33 33 H 1.08995 * 109.47798 * 245.23063 * 3 2 1 34 34 H 1.08995 * 109.46964 * 30.24790 * 6 5 4 35 35 H 1.08991 * 109.47488 * 150.24901 * 6 5 4 36 36 H 1.09002 * 109.47567 * 299.99922 * 7 6 5 37 37 H 1.09001 * 109.47353 * 59.99589 * 7 6 5 38 38 H 1.09008 * 109.46955 * 299.99838 * 8 7 6 39 39 H 1.09001 * 109.47209 * 59.99449 * 8 7 6 40 40 H 0.97005 * 119.99712 * 179.97438 * 12 11 9 41 41 H 1.09008 * 109.49241 * 67.29698 * 21 20 19 42 42 H 1.08995 * 109.52009 * 307.23240 * 21 20 19 43 43 H 1.09003 * 109.62831 * 186.46488 * 22 21 20 44 44 H 1.08993 * 109.62689 * 65.88634 * 22 21 20 45 45 H 1.08994 * 109.47113 * 269.99674 * 25 24 23 46 46 H 1.09000 * 109.47227 * 29.99808 * 25 24 23 47 47 H 1.09000 * 109.47090 * 149.99766 * 25 24 23 48 48 H 1.08996 * 109.62994 * 68.25550 * 27 23 22 49 49 H 1.09003 * 109.62785 * 188.83006 * 27 23 22 50 50 H 1.08997 * 109.49406 * 292.70342 * 28 20 19 51 51 H 1.08994 * 109.49360 * 52.75923 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9975 1.3296 1.1282 5 6 2.7614 1.8132 2.3853 6 6 1.4771 2.4280 2.8791 7 6 1.5041 3.9368 2.6270 8 6 0.2005 4.5612 3.1288 9 6 0.2273 6.0474 2.8810 10 1 1.0879 6.5012 2.4121 11 6 -0.8473 6.8277 3.2520 12 7 -1.8953 6.2749 3.8226 13 14 -0.8138 8.6700 2.9456 14 1 0.4693 9.0405 2.2961 15 1 -1.9437 9.0447 2.0578 16 1 -0.9404 9.3893 4.2385 17 7 3.8538 1.6477 3.0759 18 7 4.7556 1.0923 2.3477 19 6 4.2828 0.8715 1.1437 20 7 4.9625 0.2891 0.0858 21 6 6.1208 1.1025 -0.3074 22 6 6.7357 0.5250 -1.5867 23 7 7.0233 -0.9002 -1.3647 24 6 8.2408 -1.4107 -1.6356 25 6 8.5135 -2.8742 -1.4012 26 8 9.1168 -0.6925 -2.0689 27 6 5.9450 -1.7549 -0.8449 28 6 5.3630 -1.0864 0.4108 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.8500 -0.9352 -0.0004 32 1 1.3588 2.1315 0.0938 33 1 2.6180 1.4046 -0.9330 34 1 0.6347 1.9858 2.3474 35 1 1.3715 2.2400 3.9475 36 1 2.3465 4.3792 3.1587 37 1 1.6097 4.1249 1.5585 38 1 -0.6423 4.1190 2.5974 39 1 0.0953 4.3732 4.1973 40 1 -2.6511 6.8239 4.0840 41 1 6.8628 1.0889 0.4910 42 1 5.8006 2.1284 -0.4888 43 1 7.6604 1.0531 -1.8192 44 1 6.0320 0.6323 -2.4120 45 1 8.8809 -3.0171 -0.3850 46 1 7.5931 -3.4418 -1.5380 47 1 9.2639 -3.2222 -2.1111 48 1 5.1667 -1.8625 -1.6003 49 1 6.3466 -2.7348 -0.5868 50 1 6.1154 -1.0696 1.1992 51 1 4.4927 -1.6479 0.7504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351993885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:14 Heat of formation + Delta-G solvation = 50.300587 kcal Electronic energy + Delta-G solvation = -30747.266939 eV Core-core repulsion = 26682.894107 eV Total energy + Delta-G solvation = -4064.372832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.12042 -41.24169 -39.20715 -37.32341 -36.59553 -35.80462 -34.41112 -33.63597 -32.79889 -31.52564 -30.52697 -29.01412 -27.88647 -27.40976 -25.56202 -24.88224 -23.51669 -22.53265 -22.13508 -21.63095 -20.85982 -19.96087 -18.76404 -18.44021 -17.91246 -17.53650 -17.07077 -16.88043 -16.58882 -16.54097 -16.12835 -15.82473 -15.76831 -15.46126 -15.27066 -14.66976 -14.59861 -14.35666 -14.19793 -13.95403 -13.78485 -13.48550 -13.19404 -13.11035 -12.99319 -12.85014 -12.72449 -12.66351 -12.54543 -12.48756 -12.47355 -12.43037 -12.39518 -11.81773 -11.55990 -11.42894 -11.24226 -11.10096 -10.92203 -10.54451 -10.50416 -10.20741 -10.06506 -9.70395 -8.19646 -6.29217 0.60250 0.87486 1.39093 1.40915 1.49936 1.52745 1.58363 1.67376 1.94662 2.41100 2.57241 3.14036 3.30638 3.49531 3.66500 3.71629 3.80723 3.83107 3.88980 3.98901 4.12949 4.15077 4.23308 4.27941 4.31422 4.39921 4.43719 4.49149 4.54507 4.57367 4.59306 4.66753 4.67759 4.76375 4.93731 4.96533 4.99387 5.03647 5.07046 5.10841 5.16137 5.31644 5.42766 5.51741 5.52465 5.60650 5.68781 5.74184 5.85953 6.10705 6.26097 6.35159 6.86610 7.09789 7.39452 7.61701 8.91768 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.002129 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.682386 B =13149.703200 C =13754.382422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.185 4.185 3 C 0.133 3.867 4 N -0.452 5.452 5 C 0.205 3.795 6 C -0.024 4.024 7 C -0.085 4.085 8 C 0.028 3.972 9 C -0.542 4.542 10 H 0.053 0.947 11 C 0.004 3.996 12 N -0.927 5.927 13 Si 0.958 3.042 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.280 1.280 17 N -0.329 5.329 18 N -0.345 5.345 19 C 0.343 3.657 20 N -0.447 5.447 21 C 0.059 3.941 22 C 0.125 3.875 23 N -0.617 5.617 24 C 0.506 3.494 25 C -0.169 4.169 26 O -0.600 6.600 27 C 0.118 3.882 28 C 0.050 3.950 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.053 0.947 38 H 0.008 0.992 39 H -0.003 1.003 40 H 0.264 0.736 41 H 0.036 0.964 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.094 0.906 48 H 0.102 0.898 49 H 0.132 0.868 50 H 0.042 0.958 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.477 -23.848 -15.054 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.203 4.203 3 C 0.013 3.987 4 N -0.143 5.143 5 C -0.064 4.064 6 C -0.063 4.063 7 C -0.124 4.124 8 C -0.009 4.009 9 C -0.580 4.580 10 H 0.071 0.929 11 C -0.194 4.194 12 N -0.568 5.568 13 Si 0.783 3.217 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.206 1.206 17 N -0.169 5.169 18 N -0.189 5.189 19 C -0.015 4.015 20 N -0.173 5.173 21 C -0.069 4.069 22 C 0.002 3.998 23 N -0.350 5.350 24 C 0.298 3.702 25 C -0.228 4.228 26 O -0.482 6.482 27 C -0.004 4.004 28 C -0.078 4.078 29 H 0.120 0.880 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.015 0.985 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.133 0.867 47 H 0.112 0.888 48 H 0.120 0.880 49 H 0.150 0.850 50 H 0.061 0.939 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.429 -23.443 -14.482 30.228 hybrid contribution -0.538 1.482 -0.026 1.577 sum 11.891 -21.961 -14.507 28.881 Atomic orbital electron populations 1.24219 0.95487 1.03602 0.95667 1.22915 0.96217 0.97167 1.04042 1.21248 0.91531 0.98559 0.87403 1.46514 1.11613 1.44377 1.11808 1.25112 0.99069 1.00022 0.82150 1.20140 0.88576 0.94991 1.02638 1.21351 0.98747 0.92126 1.00137 1.18976 0.92442 0.94286 0.95200 1.21668 1.02300 0.94530 1.39536 0.92850 1.25864 0.95219 1.03410 0.94920 1.70070 1.07095 1.37309 1.42283 0.85504 0.78316 0.79882 0.77984 1.19142 1.20054 1.20594 1.73995 0.98557 1.17516 1.26784 1.74472 1.24462 1.17950 1.02014 1.22419 0.85037 1.01695 0.92319 1.58784 1.25348 1.03511 1.29699 1.22484 0.89758 0.97188 0.97518 1.21589 1.00928 0.81448 0.95875 1.48390 1.12077 1.09890 1.64669 1.21662 0.80606 0.92338 0.75637 1.22008 1.05872 0.89230 1.05710 1.90704 1.45945 1.63537 1.47984 1.22267 0.89492 0.94243 0.94365 1.22753 1.00952 0.85817 0.98234 0.87994 0.86017 0.86015 0.88140 0.86011 0.88223 0.88877 0.94147 0.92844 0.97378 0.98508 0.92740 0.94520 0.89658 0.89508 0.88720 0.87491 0.86690 0.88754 0.87989 0.85046 0.93930 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 14.32 67.79 0.97 -1.14 16 2 C -0.18 -2.76 9.85 25.65 0.25 -2.51 16 3 C 0.13 2.46 6.35 85.63 0.54 3.00 16 4 N -0.45 -11.58 2.79 -518.91 -1.45 -13.03 16 5 C 0.21 6.60 7.32 137.64 1.01 7.61 16 6 C -0.02 -0.77 5.40 29.85 0.16 -0.61 16 7 C -0.08 -3.37 5.13 30.59 0.16 -3.22 16 8 C 0.03 1.40 4.97 29.85 0.15 1.55 16 9 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 10 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 11 C 0.00 0.23 5.46 84.66 0.46 0.69 16 12 N -0.93 -54.77 13.29 21.45 0.28 -54.49 16 13 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 N -0.33 -12.30 12.18 -49.53 -0.60 -12.90 16 18 N -0.35 -11.76 12.19 -58.00 -0.71 -12.47 16 19 C 0.34 8.97 6.40 260.11 1.66 10.63 16 20 N -0.45 -8.18 4.64 -704.23 -3.27 -11.44 16 21 C 0.06 1.12 5.54 86.38 0.48 1.60 16 22 C 0.12 1.94 6.60 86.35 0.57 2.51 16 23 N -0.62 -8.15 3.00 -817.07 -2.45 -10.60 16 24 C 0.51 8.24 7.82 87.66 0.69 8.93 16 25 C -0.17 -1.07 9.45 71.24 0.67 -0.39 16 26 O -0.60 -16.04 16.55 -3.03 -0.05 -16.09 16 27 C 0.12 0.77 6.39 86.50 0.55 1.33 16 28 C 0.05 0.66 5.55 86.54 0.48 1.14 16 29 H 0.10 1.54 7.84 -2.91 -0.02 1.51 16 30 H 0.12 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.12 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.10 1.96 7.46 -2.39 -0.02 1.94 16 33 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 2.78 7.89 -2.39 -0.02 2.76 16 35 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 41 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 43 H 0.09 1.67 7.06 -2.39 -0.02 1.65 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.11 -0.03 6.25 -2.39 -0.01 -0.05 16 47 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.13 0.04 5.63 -2.39 -0.01 0.03 16 50 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.10 1.16 8.09 -2.39 -0.02 1.14 16 Total: -1.00 -78.99 419.33 3.72 -75.27 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.90 Total: 8.80 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 9.04 Total: 1.10 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -8.20 Total: -114.93 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.05 Total: -16.09 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -78.99 3.72 -75.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351993885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.570 kcal (2) G-P(sol) polarization free energy of solvation -78.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds