Wall clock time and date at job start Wed Apr 1 2020 04:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.46989 * 2 1 4 4 C 1.36743 * 127.13733 * 264.75015 * 3 2 1 5 5 C 1.50705 * 126.34286 * 359.97438 * 4 3 2 6 6 C 1.52996 * 109.47107 * 90.00267 * 5 4 3 7 7 C 1.50694 * 109.47197 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99978 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00105 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00229 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00019 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47206 * 90.00541 * 11 9 7 13 13 H 1.48501 * 109.47442 * 210.00529 * 11 9 7 14 14 H 1.48503 * 109.47377 * 330.00648 * 11 9 7 15 15 N 1.30290 * 107.30513 * 180.02562 * 4 3 2 16 16 N 1.28531 * 110.05607 * 359.73153 * 15 4 3 17 17 C 1.31222 * 109.85627 * 0.44448 * 16 15 4 18 18 N 1.38581 * 126.46950 * 179.82062 * 17 16 15 19 19 C 1.46894 * 111.00011 * 311.78137 * 18 17 16 20 20 C 1.50229 * 110.28815 * 73.33152 * 19 18 17 21 21 O 1.21285 * 118.62748 * 196.61339 * 20 19 18 22 22 N 1.33901 * 122.73656 * 16.58859 * 20 19 18 23 23 C 1.47144 * 122.71942 * 358.17246 * 22 20 19 24 24 H 1.09004 * 108.26018 * 261.34511 * 23 22 20 25 25 C 1.52429 * 111.86099 * 142.55549 * 23 22 20 26 26 C 1.52968 * 110.00948 * 295.51267 * 25 23 22 27 27 C 1.51721 * 109.24824 * 300.69900 * 26 25 23 28 28 C 1.52894 * 109.94864 * 60.54897 * 27 26 25 29 29 C 1.47565 * 110.99768 * 74.33976 * 18 17 16 30 30 H 1.09003 * 110.00850 * 66.96596 * 29 18 17 31 31 H 1.08997 * 109.47349 * 60.00481 * 1 2 3 32 32 H 1.09004 * 109.46654 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47583 * 300.00209 * 1 2 3 34 34 H 1.08995 * 109.47583 * 239.99790 * 2 1 3 35 35 H 1.08997 * 109.47349 * 119.99519 * 2 1 3 36 36 H 1.09003 * 109.46719 * 210.00000 * 5 4 3 37 37 H 1.08997 * 109.47370 * 330.00004 * 5 4 3 38 38 H 1.09003 * 109.47113 * 299.99491 * 6 5 4 39 39 H 1.09007 * 109.47298 * 59.99698 * 6 5 4 40 40 H 0.97003 * 120.00470 * 179.97438 * 10 9 7 41 41 H 1.09009 * 109.32967 * 193.58080 * 19 18 17 42 42 H 1.08998 * 109.33467 * 313.23617 * 19 18 17 43 43 H 0.96995 * 118.77396 * 177.95897 * 22 20 19 44 44 H 1.08989 * 109.38575 * 55.68718 * 25 23 22 45 45 H 1.09008 * 109.37796 * 175.35249 * 25 23 22 46 46 H 1.09000 * 109.52520 * 60.29689 * 26 25 23 47 47 H 1.08993 * 109.53225 * 180.43629 * 26 25 23 48 48 H 1.08997 * 108.67137 * 300.69419 * 27 26 25 49 49 H 1.09004 * 109.62977 * 180.99022 * 27 26 25 50 50 H 1.08991 * 109.41611 * 179.79018 * 28 27 26 51 51 H 1.09001 * 109.41387 * 59.92184 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3875 2.1264 -1.0855 5 6 2.3698 1.6781 -2.5243 6 6 1.0094 2.0047 -3.1435 7 6 0.9919 1.5571 -4.5823 8 1 1.8641 1.0870 -5.0122 9 6 -0.1374 1.7476 -5.3499 10 7 -1.1993 2.3205 -4.8266 11 14 -0.1588 1.1933 -7.1337 12 1 -0.6450 -0.2077 -7.2109 13 1 -1.0630 2.0748 -7.9152 14 1 1.2145 1.2722 -7.6931 15 7 2.7584 3.2952 -0.6453 16 7 2.6442 3.3409 0.6341 17 6 2.1995 2.1909 1.0833 18 7 1.9548 1.8627 2.4072 19 6 3.0892 2.2391 3.2612 20 6 3.1348 3.7300 3.4397 21 8 4.1582 4.2351 3.8500 22 7 2.0927 4.5245 3.1641 23 6 0.8229 4.0125 2.6249 24 1 0.8220 4.1692 1.5462 25 6 -0.3786 4.7481 3.2069 26 6 -0.4728 4.4885 4.7114 27 6 -0.6137 2.9974 4.9538 28 6 0.6064 2.2613 4.3998 29 6 0.7222 2.5120 2.8938 30 1 -0.1452 2.0985 2.3792 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 3.1540 2.1965 -3.0759 37 1 2.5420 0.6029 -2.5720 38 1 0.2252 1.4863 -2.5918 39 1 0.8372 3.0801 -3.0958 40 1 -1.9938 2.4549 -5.3668 41 1 2.9812 1.7621 4.2355 42 1 4.0169 1.9050 2.7968 43 1 2.1752 5.4768 3.3289 44 1 -0.2679 5.8179 3.0306 45 1 -1.2885 4.3955 2.7212 46 1 0.4327 4.8477 5.2005 47 1 -1.3384 5.0115 5.1179 48 1 -1.5125 2.6450 4.4477 49 1 -0.6991 2.8068 6.0236 50 1 0.4980 1.1921 4.5817 51 1 1.5055 2.6243 4.8977 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352727499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:41 Heat of formation + Delta-G solvation = 44.611304 kcal Electronic energy + Delta-G solvation = -32904.122805 eV Core-core repulsion = 28839.503267 eV Total energy + Delta-G solvation = -4064.619538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.92542 -41.17271 -38.21590 -36.33125 -35.58280 -34.02837 -33.89141 -31.91033 -30.71921 -30.25710 -29.82287 -28.79490 -26.72385 -25.32063 -23.88809 -23.15568 -22.92635 -21.92762 -21.46072 -20.48540 -19.86428 -18.80494 -17.49423 -17.24033 -16.69741 -16.34117 -16.16438 -15.85328 -15.51589 -15.09354 -14.53467 -14.51401 -14.47363 -14.24340 -13.72351 -13.47747 -13.43508 -13.18856 -13.07835 -12.82403 -12.65404 -12.49254 -12.29182 -12.12378 -12.01680 -11.50686 -11.44853 -11.29183 -11.18215 -11.07449 -11.01309 -10.95611 -10.74945 -10.71989 -10.49561 -10.18014 -9.97471 -9.91202 -9.80328 -9.28005 -9.03029 -8.89753 -8.45815 -8.40512 -6.10870 -4.14712 1.94040 2.33894 2.63400 3.09976 3.17702 3.25614 3.33180 3.36426 3.56762 4.14359 4.29364 4.36788 4.40854 4.49285 4.70682 4.71634 4.75233 4.86033 4.93532 4.99232 5.02432 5.06779 5.20176 5.21883 5.25570 5.28609 5.33468 5.41810 5.47036 5.52965 5.65726 5.69250 5.70277 5.71141 5.75671 5.84866 5.93416 6.00394 6.15436 6.23520 6.26420 6.33036 6.39466 6.59565 6.75480 6.83690 7.28442 7.32472 7.50489 7.62481 7.86348 8.18382 8.24006 8.91032 9.06511 9.50181 11.00111 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003014 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.856452 B = 9286.848998 C = 9680.465268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.110 3.890 3 N -0.458 5.458 4 C 0.221 3.779 5 C -0.033 4.033 6 C 0.033 3.967 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.061 3.939 10 N -0.892 5.892 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.272 1.272 15 N -0.297 5.297 16 N -0.299 5.299 17 C 0.301 3.699 18 N -0.443 5.443 19 C 0.051 3.949 20 C 0.510 3.490 21 O -0.559 6.559 22 N -0.695 5.695 23 C 0.114 3.886 24 H 0.086 0.914 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.116 4.116 29 C 0.081 3.919 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.017 0.983 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.398 0.602 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.079 0.921 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 -3.961 20.835 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.151 5.151 4 C -0.046 4.046 5 C -0.073 4.073 6 C -0.005 4.005 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.141 4.141 10 N -0.531 5.531 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.197 1.197 15 N -0.137 5.137 16 N -0.144 5.144 17 C -0.054 4.054 18 N -0.167 5.167 19 C -0.080 4.080 20 C 0.295 3.705 21 O -0.436 6.436 22 N -0.347 5.347 23 C 0.007 3.993 24 H 0.103 0.897 25 C -0.163 4.163 26 C -0.159 4.159 27 C -0.154 4.154 28 C -0.154 4.154 29 C -0.027 4.027 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.129 0.871 43 H 0.234 0.766 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.098 0.902 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.014 -3.024 20.981 21.197 hybrid contribution -0.610 -0.474 -1.110 1.352 sum -0.624 -3.497 19.871 20.186 Atomic orbital electron populations 1.22177 0.93621 1.03291 1.03617 1.21825 0.96173 0.78737 1.04524 1.46389 1.48947 1.13710 1.06072 1.25691 0.97806 0.88612 0.92511 1.20489 1.03888 1.00306 0.82610 1.19088 0.88422 0.97861 0.95145 1.21130 0.99439 1.39885 0.95798 0.92318 1.24988 0.95579 0.95031 0.98529 1.69960 1.03626 1.42822 1.36652 0.86570 0.78106 0.78457 0.84749 1.20651 1.21172 1.19722 1.74096 1.20566 1.16927 1.02120 1.74631 1.18284 1.16948 1.04537 1.22118 1.06973 0.88614 0.87738 1.59414 1.04034 1.56855 0.96406 1.22426 0.94627 0.91414 0.99512 1.20573 0.82851 0.90497 0.76540 1.90745 1.29816 1.75604 1.47476 1.45601 1.13009 1.10921 1.65150 1.21634 0.84013 0.93929 0.99712 0.89661 1.21699 0.97350 1.00980 0.96280 1.21318 1.02244 0.96443 0.95853 1.21253 0.97818 0.95260 1.01085 1.21726 0.99396 1.01636 0.92666 1.22285 0.91969 0.91468 0.96974 0.87482 0.90441 0.90520 0.92424 0.88414 0.88832 0.89243 0.91132 0.96508 0.95730 0.92869 0.85964 0.87118 0.76567 0.90878 0.90004 0.91769 0.91443 0.91516 0.91259 0.90200 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.15 0.38 -1.61 16 2 C 0.11 1.32 6.79 -4.04 -0.03 1.29 16 3 N -0.46 -7.14 2.81 -114.08 -0.32 -7.46 16 4 C 0.22 4.17 7.32 -154.01 -1.13 3.04 16 5 C -0.03 -0.65 5.52 -27.88 -0.15 -0.80 16 6 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 7 C -0.52 -13.86 9.11 -34.44 -0.31 -14.18 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 11 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 15 N -0.30 -6.19 12.18 32.99 0.40 -5.79 16 16 N -0.30 -5.58 8.67 30.31 0.26 -5.31 16 17 C 0.30 4.65 5.82 -318.87 -1.86 2.79 16 18 N -0.44 -5.16 4.95 -168.14 -0.83 -6.00 16 19 C 0.05 0.59 5.16 -5.21 -0.03 0.56 16 20 C 0.51 7.21 5.74 -11.60 -0.07 7.14 16 21 O -0.56 -9.97 17.83 5.55 0.10 -9.87 16 22 N -0.70 -8.57 4.42 -54.17 -0.24 -8.81 16 23 C 0.11 1.27 2.31 -67.99 -0.16 1.11 16 24 H 0.09 1.28 6.22 -51.93 -0.32 0.95 16 25 C -0.12 -1.05 5.61 -27.04 -0.15 -1.20 16 26 C -0.12 -0.84 5.81 -27.40 -0.16 -1.00 16 27 C -0.12 -0.73 5.82 -27.43 -0.16 -0.89 16 28 C -0.12 -0.85 4.58 -26.73 -0.12 -0.98 16 29 C 0.08 0.80 2.60 -67.41 -0.18 0.63 16 30 H 0.11 1.06 7.33 -51.93 -0.38 0.68 16 31 H 0.08 1.19 6.81 -51.93 -0.35 0.84 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.63 7.33 -51.93 -0.38 0.25 16 34 H 0.10 1.13 7.11 -51.93 -0.37 0.76 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 37 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 38 H 0.02 0.42 6.81 -51.93 -0.35 0.06 16 39 H 0.02 0.67 8.14 -51.92 -0.42 0.24 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.12 1.06 6.63 -51.92 -0.34 0.71 16 42 H 0.11 1.41 8.01 -51.93 -0.42 0.99 16 43 H 0.40 4.73 8.78 -40.82 -0.36 4.37 16 44 H 0.07 0.61 8.14 -51.94 -0.42 0.18 16 45 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 46 H 0.06 0.49 7.89 -51.93 -0.41 0.09 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 51 H 0.07 0.56 5.35 -51.93 -0.28 0.28 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -33.43 390.78 -11.49 -44.91 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.11 Total: 3.49 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -4.35 Total: -1.87 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.01 Total: -58.24 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.10 Total: -9.87 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.43 -11.49 -44.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352727499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.523 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds