Wall clock time and date at job start Wed Apr 1 2020 04:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.46989 * 2 1 4 4 C 1.36743 * 127.13733 * 264.75015 * 3 2 1 5 5 C 1.50705 * 126.34286 * 359.97438 * 4 3 2 6 6 C 1.52996 * 109.47107 * 90.00267 * 5 4 3 7 7 C 1.50694 * 109.47197 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99978 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00105 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00229 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00019 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47206 * 90.00541 * 11 9 7 13 13 H 1.48501 * 109.47442 * 210.00529 * 11 9 7 14 14 H 1.48503 * 109.47377 * 330.00648 * 11 9 7 15 15 N 1.30290 * 107.30513 * 180.02562 * 4 3 2 16 16 N 1.28531 * 110.05607 * 359.73153 * 15 4 3 17 17 C 1.31222 * 109.85627 * 0.44448 * 16 15 4 18 18 N 1.38581 * 126.46950 * 179.82062 * 17 16 15 19 19 C 1.46894 * 111.00011 * 311.78137 * 18 17 16 20 20 C 1.50229 * 110.28815 * 73.33152 * 19 18 17 21 21 O 1.21285 * 118.62748 * 196.61339 * 20 19 18 22 22 N 1.33901 * 122.73656 * 16.58859 * 20 19 18 23 23 C 1.47144 * 122.71942 * 358.17246 * 22 20 19 24 24 H 1.09004 * 108.26018 * 261.34511 * 23 22 20 25 25 C 1.52429 * 111.86099 * 142.55549 * 23 22 20 26 26 C 1.52968 * 110.00948 * 295.51267 * 25 23 22 27 27 C 1.51721 * 109.24824 * 300.69900 * 26 25 23 28 28 C 1.52894 * 109.94864 * 60.54897 * 27 26 25 29 29 C 1.47565 * 110.99768 * 74.33976 * 18 17 16 30 30 H 1.09003 * 110.00850 * 66.96596 * 29 18 17 31 31 H 1.08997 * 109.47349 * 60.00481 * 1 2 3 32 32 H 1.09004 * 109.46654 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47583 * 300.00209 * 1 2 3 34 34 H 1.08995 * 109.47583 * 239.99790 * 2 1 3 35 35 H 1.08997 * 109.47349 * 119.99519 * 2 1 3 36 36 H 1.09003 * 109.46719 * 210.00000 * 5 4 3 37 37 H 1.08997 * 109.47370 * 330.00004 * 5 4 3 38 38 H 1.09003 * 109.47113 * 299.99491 * 6 5 4 39 39 H 1.09007 * 109.47298 * 59.99698 * 6 5 4 40 40 H 0.97003 * 120.00470 * 179.97438 * 10 9 7 41 41 H 1.09009 * 109.32967 * 193.58080 * 19 18 17 42 42 H 1.08998 * 109.33467 * 313.23617 * 19 18 17 43 43 H 0.96995 * 118.77396 * 177.95897 * 22 20 19 44 44 H 1.08989 * 109.38575 * 55.68718 * 25 23 22 45 45 H 1.09008 * 109.37796 * 175.35249 * 25 23 22 46 46 H 1.09000 * 109.52520 * 60.29689 * 26 25 23 47 47 H 1.08993 * 109.53225 * 180.43629 * 26 25 23 48 48 H 1.08997 * 108.67137 * 300.69419 * 27 26 25 49 49 H 1.09004 * 109.62977 * 180.99022 * 27 26 25 50 50 H 1.08991 * 109.41611 * 179.79018 * 28 27 26 51 51 H 1.09001 * 109.41387 * 59.92184 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3875 2.1264 -1.0855 5 6 2.3698 1.6781 -2.5243 6 6 1.0094 2.0047 -3.1435 7 6 0.9919 1.5571 -4.5823 8 1 1.8641 1.0870 -5.0122 9 6 -0.1374 1.7476 -5.3499 10 7 -1.1993 2.3205 -4.8266 11 14 -0.1588 1.1933 -7.1337 12 1 -0.6450 -0.2077 -7.2109 13 1 -1.0630 2.0748 -7.9152 14 1 1.2145 1.2722 -7.6931 15 7 2.7584 3.2952 -0.6453 16 7 2.6442 3.3409 0.6341 17 6 2.1995 2.1909 1.0833 18 7 1.9548 1.8627 2.4072 19 6 3.0892 2.2391 3.2612 20 6 3.1348 3.7300 3.4397 21 8 4.1582 4.2351 3.8500 22 7 2.0927 4.5245 3.1641 23 6 0.8229 4.0125 2.6249 24 1 0.8220 4.1692 1.5462 25 6 -0.3786 4.7481 3.2069 26 6 -0.4728 4.4885 4.7114 27 6 -0.6137 2.9974 4.9538 28 6 0.6064 2.2613 4.3998 29 6 0.7222 2.5120 2.8938 30 1 -0.1452 2.0985 2.3792 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 3.1540 2.1965 -3.0759 37 1 2.5420 0.6029 -2.5720 38 1 0.2252 1.4863 -2.5918 39 1 0.8372 3.0801 -3.0958 40 1 -1.9938 2.4549 -5.3668 41 1 2.9812 1.7621 4.2355 42 1 4.0169 1.9050 2.7968 43 1 2.1752 5.4768 3.3289 44 1 -0.2679 5.8179 3.0306 45 1 -1.2885 4.3955 2.7212 46 1 0.4327 4.8477 5.2005 47 1 -1.3384 5.0115 5.1179 48 1 -1.5125 2.6450 4.4477 49 1 -0.6991 2.8068 6.0236 50 1 0.4980 1.1921 4.5817 51 1 1.5055 2.6243 4.8977 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352727499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:40 Heat of formation + Delta-G solvation = 23.870622 kcal Electronic energy + Delta-G solvation = -32905.022188 eV Core-core repulsion = 28839.503267 eV Total energy + Delta-G solvation = -4065.518921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.22517 -42.19478 -39.27209 -37.27336 -36.85715 -35.78818 -34.84949 -33.69452 -31.69087 -31.36715 -30.70097 -30.15679 -27.89370 -27.04140 -24.99334 -24.03762 -23.86809 -23.52124 -22.59600 -21.45060 -21.22754 -19.73064 -18.74827 -18.37528 -18.22970 -17.68238 -17.21440 -16.80387 -16.77179 -16.48953 -16.10436 -15.68369 -15.27814 -15.10160 -14.99620 -14.73767 -14.64454 -14.32213 -14.17239 -14.07285 -13.65627 -13.45284 -13.41060 -13.19687 -13.09974 -12.94366 -12.86700 -12.60334 -12.47151 -12.39343 -12.18018 -12.01297 -11.85054 -11.77427 -11.62408 -11.47394 -11.36026 -11.30005 -11.24166 -11.08063 -10.55080 -10.16460 -10.10093 -9.71489 -8.19693 -6.31074 0.64532 1.15237 1.43111 1.45044 1.51693 1.55437 1.72010 2.09608 2.42349 2.55112 3.14954 3.25348 3.38375 3.50840 3.57155 3.72764 3.75381 3.91380 3.99781 4.06807 4.07908 4.10604 4.24276 4.26745 4.36845 4.39569 4.44871 4.55012 4.61274 4.61915 4.67402 4.72807 4.81139 4.82199 4.92588 4.99496 5.06160 5.12341 5.15047 5.21164 5.24977 5.29922 5.31370 5.44355 5.48636 5.50537 5.62475 5.72926 5.80150 6.10733 6.18273 6.23805 6.84232 7.08655 7.38657 7.66621 8.92025 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003014 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.856452 B = 9286.848998 C = 9680.465268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.102 3.898 3 N -0.453 5.453 4 C 0.205 3.795 5 C -0.017 4.017 6 C 0.046 3.954 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.005 3.995 10 N -0.931 5.931 11 Si 0.963 3.037 12 H -0.268 1.268 13 H -0.288 1.288 14 H -0.263 1.263 15 N -0.337 5.337 16 N -0.331 5.331 17 C 0.321 3.679 18 N -0.426 5.426 19 C 0.053 3.947 20 C 0.505 3.495 21 O -0.602 6.602 22 N -0.689 5.689 23 C 0.116 3.884 24 H 0.043 0.957 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.113 4.113 28 C -0.108 4.108 29 C 0.080 3.920 30 H 0.112 0.888 31 H 0.033 0.967 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.004 0.996 39 H -0.021 1.021 40 H 0.263 0.737 41 H 0.163 0.837 42 H 0.102 0.898 43 H 0.397 0.603 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.102 0.898 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -6.625 22.416 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.019 4.019 3 N -0.145 5.145 4 C -0.063 4.063 5 C -0.057 4.057 6 C 0.008 3.992 7 C -0.577 4.577 8 H 0.088 0.912 9 C -0.193 4.193 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.193 1.193 13 H -0.214 1.214 14 H -0.188 1.188 15 N -0.177 5.177 16 N -0.175 5.175 17 C -0.035 4.035 18 N -0.151 5.151 19 C -0.077 4.077 20 C 0.292 3.708 21 O -0.484 6.484 22 N -0.339 5.339 23 C 0.010 3.990 24 H 0.061 0.939 25 C -0.159 4.159 26 C -0.153 4.153 27 C -0.151 4.151 28 C -0.146 4.146 29 C -0.028 4.028 30 H 0.130 0.870 31 H 0.052 0.948 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.145 0.855 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.022 0.978 39 H -0.002 1.002 40 H 0.072 0.928 41 H 0.180 0.820 42 H 0.120 0.880 43 H 0.233 0.767 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.120 0.880 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.743 -5.709 22.559 23.282 hybrid contribution -0.445 0.403 -1.535 1.648 sum -1.188 -5.306 21.023 21.715 Atomic orbital electron populations 1.22115 0.93386 1.04609 1.01781 1.22220 0.96284 0.76872 1.06487 1.46548 1.48123 1.14757 1.05043 1.25368 0.99088 0.88925 0.92933 1.20173 1.00721 1.01817 0.82991 1.18835 0.90833 0.94630 0.94948 1.21574 0.99760 1.39526 0.96828 0.91237 1.25906 0.95200 0.95055 1.03150 1.70102 1.04363 1.44215 1.38432 0.85472 0.78352 0.78308 0.79076 1.19331 1.21388 1.18757 1.73983 1.21921 1.18331 1.03512 1.74558 1.20305 1.18850 1.03783 1.22520 1.04308 0.87579 0.89140 1.59701 1.04774 1.56278 0.94336 1.22542 0.94195 0.89794 1.01147 1.21053 0.82333 0.91666 0.75778 1.90721 1.31372 1.76548 1.49733 1.45655 1.13282 1.10951 1.64022 1.21642 0.84419 0.95586 0.97331 0.93946 1.21682 0.96036 1.00424 0.97741 1.21297 1.02517 0.97532 0.93998 1.21269 0.97471 0.94144 1.02224 1.21736 0.99827 1.03226 0.89803 1.22481 0.91000 0.90060 0.99224 0.87007 0.94767 0.87591 0.91619 0.87817 0.85492 0.89777 0.88453 0.97775 1.00211 0.92844 0.81990 0.88021 0.76699 0.91246 0.89419 0.92558 0.90003 0.90663 0.89462 0.87979 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 10.24 71.98 0.74 -2.79 16 2 C 0.10 2.23 6.79 86.38 0.59 2.82 16 3 N -0.45 -13.93 2.81 -514.85 -1.45 -15.37 16 4 C 0.21 7.99 7.32 137.64 1.01 9.00 16 5 C -0.02 -0.69 5.52 29.85 0.16 -0.53 16 6 C 0.05 2.31 4.95 29.84 0.15 2.46 16 7 C -0.54 -28.88 9.11 25.60 0.23 -28.65 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.01 0.28 5.46 84.66 0.46 0.75 16 10 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 11 Si 0.96 42.45 29.54 68.60 2.03 44.47 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 13 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 15 N -0.34 -14.75 12.18 -49.53 -0.60 -15.35 16 16 N -0.33 -12.78 8.67 -58.00 -0.50 -13.29 16 17 C 0.32 9.83 5.82 260.11 1.52 11.35 16 18 N -0.43 -9.16 4.95 -685.87 -3.39 -12.55 16 19 C 0.05 1.15 5.16 85.41 0.44 1.59 16 20 C 0.51 14.23 5.74 87.65 0.50 14.73 16 21 O -0.60 -21.88 17.83 -3.04 -0.05 -21.94 16 22 N -0.69 -17.26 4.42 -444.19 -1.97 -19.22 16 23 C 0.12 2.59 2.31 44.60 0.10 2.69 16 24 H 0.04 1.34 6.22 -2.39 -0.01 1.33 16 25 C -0.12 -1.94 5.61 30.39 0.17 -1.77 16 26 C -0.12 -1.34 5.81 30.16 0.18 -1.17 16 27 C -0.11 -1.01 5.82 30.14 0.18 -0.84 16 28 C -0.11 -1.21 4.58 30.60 0.14 -1.07 16 29 C 0.08 1.43 2.60 44.75 0.12 1.54 16 30 H 0.11 1.96 7.33 -2.39 -0.02 1.95 16 31 H 0.03 1.05 6.81 -2.39 -0.02 1.04 16 32 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.06 1.31 7.33 -2.39 -0.02 1.29 16 34 H 0.10 2.17 7.11 -2.39 -0.02 2.16 16 35 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 37 H 0.10 3.31 7.18 -2.39 -0.02 3.29 16 38 H 0.00 0.21 6.81 -2.39 -0.02 0.19 16 39 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 16 40 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.16 2.25 6.63 -2.38 -0.02 2.23 16 42 H 0.10 2.47 8.01 -2.39 -0.02 2.45 16 43 H 0.40 9.86 8.78 -92.71 -0.81 9.05 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.06 0.76 7.89 -2.39 -0.02 0.75 16 47 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.06 0.82 5.35 -2.39 -0.01 0.81 16 Total: -1.00 -77.09 390.78 1.16 -75.93 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.14 Total: 21.79 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.68 Total: 10.11 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -7.63 Total: -130.37 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -77.09 1.16 -75.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352727499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.801 kcal (2) G-P(sol) polarization free energy of solvation -77.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds