Wall clock time and date at job start Wed Apr 1 2020 04:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.47014 * 2 1 4 4 C 1.36736 * 127.13956 * 264.27099 * 3 2 1 5 5 C 1.50705 * 126.34541 * 359.96775 * 4 3 2 6 6 C 1.53002 * 109.47113 * 89.99708 * 5 4 3 7 7 C 1.50698 * 109.46969 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00300 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99608 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99941 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47206 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46463 * 119.99938 * 11 9 7 14 14 H 1.48498 * 109.47118 * 239.99531 * 11 9 7 15 15 N 1.30295 * 107.30845 * 179.83601 * 4 3 2 16 16 N 1.28523 * 110.05485 * 0.44584 * 15 4 3 17 17 C 1.31223 * 109.85555 * 359.71598 * 16 15 4 18 18 N 1.38588 * 126.46982 * 180.02562 * 17 16 15 19 19 C 1.47035 * 110.99740 * 55.57916 * 18 17 16 20 20 C 1.50150 * 110.64973 * 284.69230 * 19 18 17 21 21 O 1.21280 * 118.40649 * 164.44618 * 20 19 18 22 22 N 1.34004 * 123.19236 * 344.43005 * 20 19 18 23 23 C 1.45646 * 121.94771 * 3.19938 * 22 20 19 24 24 H 1.09002 * 108.42312 * 96.97880 * 23 22 20 25 25 C 1.52701 * 111.60213 * 216.96647 * 23 22 20 26 26 C 1.53204 * 108.86688 * 182.52197 * 25 23 22 27 27 C 1.52886 * 109.98213 * 300.67284 * 26 25 23 28 28 C 1.53212 * 109.98710 * 58.83805 * 27 26 25 29 29 C 1.46726 * 111.00113 * 293.02640 * 18 17 16 30 30 H 1.08992 * 109.38967 * 173.34562 * 29 18 17 31 31 H 1.09001 * 109.46793 * 174.77912 * 1 2 3 32 32 H 1.08995 * 109.46849 * 294.77715 * 1 2 3 33 33 H 1.08996 * 109.47185 * 54.77944 * 1 2 3 34 34 H 1.09006 * 109.46688 * 120.00189 * 2 1 3 35 35 H 1.08996 * 109.46729 * 239.99838 * 2 1 3 36 36 H 1.08998 * 109.47360 * 210.00219 * 5 4 3 37 37 H 1.09005 * 109.46752 * 330.00037 * 5 4 3 38 38 H 1.08997 * 109.47279 * 299.99944 * 6 5 4 39 39 H 1.09001 * 109.46802 * 60.00082 * 6 5 4 40 40 H 0.96997 * 119.99760 * 180.02562 * 10 9 7 41 41 H 1.09000 * 109.23838 * 44.98335 * 19 18 17 42 42 H 1.09002 * 109.23431 * 164.37362 * 19 18 17 43 43 H 0.97001 * 119.02583 * 183.18213 * 22 20 19 44 44 H 1.09005 * 109.56512 * 62.71198 * 25 23 22 45 45 H 1.08991 * 109.67507 * 302.40439 * 25 23 22 46 46 H 1.09001 * 109.38885 * 180.51374 * 26 25 23 47 47 H 1.08998 * 109.38582 * 60.82745 * 26 25 23 48 48 H 1.08998 * 109.38504 * 298.68259 * 27 26 25 49 49 H 1.08995 * 109.29826 * 178.94345 * 27 26 25 50 50 H 1.09001 * 109.56967 * 180.79637 * 28 27 26 51 51 H 1.09000 * 109.67167 * 60.49745 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3961 2.1232 -1.0846 5 6 2.3899 1.6710 -2.5222 6 6 1.0344 1.9957 -3.1531 7 6 1.0281 1.5429 -4.5905 8 1 1.9034 1.0712 -5.0120 9 6 -0.0950 1.7319 -5.3679 10 7 -1.1607 2.3068 -4.8547 11 14 -0.1026 1.1713 -7.1497 12 1 1.2086 0.5581 -7.4813 13 1 -1.1812 0.1703 -7.3489 14 1 -0.3415 2.3393 -8.0351 15 7 2.7597 3.2947 -0.6451 16 7 2.6471 3.3399 0.6344 17 6 2.1963 2.1920 1.0829 18 7 1.9473 1.8653 2.4065 19 6 1.0182 2.8255 3.0204 20 6 1.7171 4.1199 3.3217 21 8 1.0415 5.0987 3.5589 22 7 3.0510 4.2460 3.3416 23 6 3.9349 3.1394 3.0020 24 1 4.2309 3.2428 1.9580 25 6 5.1883 3.1330 3.8742 26 6 6.0995 1.9867 3.4238 27 6 5.3637 0.6528 3.5529 28 6 4.0906 0.6724 2.7007 29 6 3.1938 1.8126 3.1786 30 1 2.9602 1.6714 4.2338 31 1 -0.3633 -1.0234 -0.0935 32 1 -0.3633 0.4307 0.9330 33 1 -0.3633 0.5927 -0.8395 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1785 2.1879 -3.0691 37 1 2.5626 0.5956 -2.5655 38 1 0.2459 1.4787 -2.6063 39 1 0.8618 3.0711 -3.1097 40 1 -1.9508 2.4394 -5.4015 41 1 0.1922 3.0145 2.3349 42 1 0.6265 2.4044 3.9464 43 1 3.4394 5.0997 3.5892 44 1 4.9066 2.9873 4.9171 45 1 5.7146 4.0815 3.7672 46 1 6.9934 1.9687 4.0472 47 1 6.3884 2.1413 2.3842 48 1 5.0977 0.4859 4.5967 49 1 6.0147 -0.1522 3.2123 50 1 3.5642 -0.2760 2.8088 51 1 4.3520 0.8275 1.6540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352727505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:52 Heat of formation + Delta-G solvation = 41.019171 kcal Electronic energy + Delta-G solvation = -32836.147890 eV Core-core repulsion = 28771.372586 eV Total energy + Delta-G solvation = -4064.775304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.94290 -40.95000 -38.44125 -36.31350 -35.58147 -34.40215 -33.91653 -31.83009 -30.59798 -30.32930 -29.57963 -28.89215 -26.39365 -25.30279 -23.91726 -23.25651 -23.00809 -21.92397 -21.36368 -20.43140 -19.90260 -19.29374 -17.47027 -17.24183 -16.84236 -16.37070 -16.04460 -15.76029 -15.35108 -14.71099 -14.67416 -14.44015 -14.40538 -14.31445 -14.22019 -13.65042 -13.32774 -13.15558 -12.95864 -12.88225 -12.72143 -12.39644 -12.25610 -12.03256 -11.83959 -11.62765 -11.40804 -11.33088 -11.22774 -11.13578 -11.03583 -10.98463 -10.89610 -10.67648 -10.50611 -10.16755 -9.97768 -9.89342 -9.77982 -9.24158 -9.05541 -8.84446 -8.46387 -8.43371 -6.07980 -4.12253 1.95683 2.34791 2.59541 3.11699 3.15406 3.26816 3.35105 3.38048 3.51679 4.06717 4.31999 4.38699 4.42712 4.47411 4.60704 4.74518 4.83192 4.90159 4.91820 4.95198 5.01400 5.09379 5.11531 5.22776 5.25196 5.28214 5.34292 5.43848 5.46096 5.49901 5.61767 5.67300 5.71467 5.74983 5.79518 5.81342 5.82052 6.00451 6.20557 6.26117 6.31077 6.33408 6.40343 6.61212 6.75122 6.84677 7.24546 7.33731 7.53781 7.65479 7.89130 8.15456 8.26217 8.93899 9.06623 9.52577 11.03020 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.003008 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.274908 B = 9307.758055 C = 9790.727120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.457 5.457 4 C 0.220 3.780 5 C -0.032 4.032 6 C 0.031 3.969 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.060 3.940 10 N -0.891 5.891 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 N -0.298 5.298 16 N -0.301 5.301 17 C 0.305 3.695 18 N -0.444 5.444 19 C 0.054 3.946 20 C 0.505 3.495 21 O -0.554 6.554 22 N -0.700 5.700 23 C 0.104 3.896 24 H 0.097 0.903 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.108 4.108 29 C 0.081 3.919 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.017 0.983 39 H 0.025 0.975 40 H 0.261 0.739 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.400 0.600 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.989 -8.071 20.781 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.150 5.150 4 C -0.046 4.046 5 C -0.072 4.072 6 C -0.007 4.007 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.529 5.529 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.209 1.209 15 N -0.138 5.138 16 N -0.146 5.146 17 C -0.050 4.050 18 N -0.168 5.168 19 C -0.077 4.077 20 C 0.290 3.710 21 O -0.432 6.432 22 N -0.351 5.351 23 C -0.002 4.002 24 H 0.115 0.885 25 C -0.162 4.162 26 C -0.156 4.156 27 C -0.154 4.154 28 C -0.146 4.146 29 C -0.028 4.028 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.236 0.764 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.097 0.903 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.595 -6.786 20.808 24.768 hybrid contribution -0.218 -0.529 -0.935 1.096 sum 11.378 -7.315 19.873 24.039 Atomic orbital electron populations 1.22154 0.93490 1.03424 1.03655 1.21813 0.96386 0.78691 1.04219 1.46395 1.48662 1.13829 1.06104 1.25682 0.97946 0.88482 0.92532 1.20481 1.03897 1.00197 0.82647 1.19101 0.88531 0.97939 0.95104 1.21155 0.99561 1.39771 0.95751 0.92279 1.25008 0.95575 0.95074 0.98562 1.69977 1.03698 1.42767 1.36472 0.86513 0.78031 0.78430 0.84901 1.19631 1.21028 1.20923 1.74091 1.21051 1.16528 1.02119 1.74601 1.17800 1.17641 1.04522 1.22072 1.06313 0.88927 0.87736 1.59145 1.13305 1.47840 0.96517 1.22414 0.95429 0.87349 1.02467 1.20729 0.82670 0.91404 0.76190 1.90756 1.63589 1.38722 1.50094 1.45353 1.05592 1.14770 1.69413 1.21758 0.90590 0.86426 1.01476 0.88530 1.21790 0.95168 0.99709 0.99530 1.21511 0.98029 0.93893 1.02174 1.21526 0.96065 0.97648 1.00196 1.21511 0.95213 0.97623 1.00242 1.22043 0.87853 0.94771 0.98120 0.87992 0.90600 0.92055 0.90578 0.89052 0.88513 0.89293 0.91155 0.96469 0.95709 0.92891 0.86731 0.85968 0.76407 0.91250 0.90992 0.91200 0.91552 0.91487 0.91155 0.90300 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.11 1.33 6.79 -4.04 -0.03 1.30 16 3 N -0.46 -7.02 2.81 -114.08 -0.32 -7.34 16 4 C 0.22 4.13 7.32 -154.01 -1.13 3.00 16 5 C -0.03 -0.63 5.51 -27.88 -0.15 -0.78 16 6 C 0.03 0.77 4.96 -27.88 -0.14 0.64 16 7 C -0.52 -14.01 9.11 -34.44 -0.31 -14.33 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 11 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 N -0.30 -6.15 12.18 32.99 0.40 -5.74 16 16 N -0.30 -5.53 8.48 30.32 0.26 -5.27 16 17 C 0.31 4.62 4.98 -318.86 -1.59 3.04 16 18 N -0.44 -5.15 4.88 -168.80 -0.82 -5.97 16 19 C 0.05 0.65 5.79 -5.17 -0.03 0.62 16 20 C 0.50 7.34 6.87 -11.60 -0.08 7.26 16 21 O -0.55 -10.25 17.82 5.56 0.10 -10.15 16 22 N -0.70 -8.53 5.02 -54.88 -0.28 -8.80 16 23 C 0.10 1.08 2.06 -68.54 -0.14 0.94 16 24 H 0.10 1.32 5.85 -51.93 -0.30 1.02 16 25 C -0.12 -0.90 5.61 -26.78 -0.15 -1.05 16 26 C -0.12 -0.77 5.91 -26.68 -0.16 -0.92 16 27 C -0.12 -0.69 5.90 -26.68 -0.16 -0.85 16 28 C -0.11 -0.85 5.28 -26.76 -0.14 -0.99 16 29 C 0.08 0.74 1.95 -67.95 -0.13 0.61 16 30 H 0.10 0.77 8.05 -51.93 -0.42 0.36 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.25 6.89 -51.93 -0.36 0.89 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.10 7.10 -51.93 -0.37 0.73 16 36 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 38 H 0.02 0.44 6.89 -51.93 -0.36 0.08 16 39 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.11 1.60 7.98 -51.93 -0.41 1.19 16 42 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.40 4.57 8.78 -40.82 -0.36 4.22 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.68 7.53 -51.93 -0.39 0.29 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -34.22 397.21 -11.40 -45.62 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.38 Total: 2.88 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -4.06 Total: -1.70 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.02 Total: -58.55 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.10 Total: -10.15 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.22 -11.40 -45.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352727505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.635 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds