Wall clock time and date at job start Wed Apr 1 2020 04:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.47014 * 2 1 4 4 C 1.36736 * 127.13956 * 264.27099 * 3 2 1 5 5 C 1.50705 * 126.34541 * 359.96775 * 4 3 2 6 6 C 1.53002 * 109.47113 * 89.99708 * 5 4 3 7 7 C 1.50698 * 109.46969 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00300 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00012 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99608 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99941 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47206 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46463 * 119.99938 * 11 9 7 14 14 H 1.48498 * 109.47118 * 239.99531 * 11 9 7 15 15 N 1.30295 * 107.30845 * 179.83601 * 4 3 2 16 16 N 1.28523 * 110.05485 * 0.44584 * 15 4 3 17 17 C 1.31223 * 109.85555 * 359.71598 * 16 15 4 18 18 N 1.38588 * 126.46982 * 180.02562 * 17 16 15 19 19 C 1.47035 * 110.99740 * 55.57916 * 18 17 16 20 20 C 1.50150 * 110.64973 * 284.69230 * 19 18 17 21 21 O 1.21280 * 118.40649 * 164.44618 * 20 19 18 22 22 N 1.34004 * 123.19236 * 344.43005 * 20 19 18 23 23 C 1.45646 * 121.94771 * 3.19938 * 22 20 19 24 24 H 1.09002 * 108.42312 * 96.97880 * 23 22 20 25 25 C 1.52701 * 111.60213 * 216.96647 * 23 22 20 26 26 C 1.53204 * 108.86688 * 182.52197 * 25 23 22 27 27 C 1.52886 * 109.98213 * 300.67284 * 26 25 23 28 28 C 1.53212 * 109.98710 * 58.83805 * 27 26 25 29 29 C 1.46726 * 111.00113 * 293.02640 * 18 17 16 30 30 H 1.08992 * 109.38967 * 173.34562 * 29 18 17 31 31 H 1.09001 * 109.46793 * 174.77912 * 1 2 3 32 32 H 1.08995 * 109.46849 * 294.77715 * 1 2 3 33 33 H 1.08996 * 109.47185 * 54.77944 * 1 2 3 34 34 H 1.09006 * 109.46688 * 120.00189 * 2 1 3 35 35 H 1.08996 * 109.46729 * 239.99838 * 2 1 3 36 36 H 1.08998 * 109.47360 * 210.00219 * 5 4 3 37 37 H 1.09005 * 109.46752 * 330.00037 * 5 4 3 38 38 H 1.08997 * 109.47279 * 299.99944 * 6 5 4 39 39 H 1.09001 * 109.46802 * 60.00082 * 6 5 4 40 40 H 0.96997 * 119.99760 * 180.02562 * 10 9 7 41 41 H 1.09000 * 109.23838 * 44.98335 * 19 18 17 42 42 H 1.09002 * 109.23431 * 164.37362 * 19 18 17 43 43 H 0.97001 * 119.02583 * 183.18213 * 22 20 19 44 44 H 1.09005 * 109.56512 * 62.71198 * 25 23 22 45 45 H 1.08991 * 109.67507 * 302.40439 * 25 23 22 46 46 H 1.09001 * 109.38885 * 180.51374 * 26 25 23 47 47 H 1.08998 * 109.38582 * 60.82745 * 26 25 23 48 48 H 1.08998 * 109.38504 * 298.68259 * 27 26 25 49 49 H 1.08995 * 109.29826 * 178.94345 * 27 26 25 50 50 H 1.09001 * 109.56967 * 180.79637 * 28 27 26 51 51 H 1.09000 * 109.67167 * 60.49745 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3961 2.1232 -1.0846 5 6 2.3899 1.6710 -2.5222 6 6 1.0344 1.9957 -3.1531 7 6 1.0281 1.5429 -4.5905 8 1 1.9034 1.0712 -5.0120 9 6 -0.0950 1.7319 -5.3679 10 7 -1.1607 2.3068 -4.8547 11 14 -0.1026 1.1713 -7.1497 12 1 1.2086 0.5581 -7.4813 13 1 -1.1812 0.1703 -7.3489 14 1 -0.3415 2.3393 -8.0351 15 7 2.7597 3.2947 -0.6451 16 7 2.6471 3.3399 0.6344 17 6 2.1963 2.1920 1.0829 18 7 1.9473 1.8653 2.4065 19 6 1.0182 2.8255 3.0204 20 6 1.7171 4.1199 3.3217 21 8 1.0415 5.0987 3.5589 22 7 3.0510 4.2460 3.3416 23 6 3.9349 3.1394 3.0020 24 1 4.2309 3.2428 1.9580 25 6 5.1883 3.1330 3.8742 26 6 6.0995 1.9867 3.4238 27 6 5.3637 0.6528 3.5529 28 6 4.0906 0.6724 2.7007 29 6 3.1938 1.8126 3.1786 30 1 2.9602 1.6714 4.2338 31 1 -0.3633 -1.0234 -0.0935 32 1 -0.3633 0.4307 0.9330 33 1 -0.3633 0.5927 -0.8395 34 1 1.8933 -0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.1785 2.1879 -3.0691 37 1 2.5626 0.5956 -2.5655 38 1 0.2459 1.4787 -2.6063 39 1 0.8618 3.0711 -3.1097 40 1 -1.9508 2.4394 -5.4015 41 1 0.1922 3.0145 2.3349 42 1 0.6265 2.4044 3.9464 43 1 3.4394 5.0997 3.5892 44 1 4.9066 2.9873 4.9171 45 1 5.7146 4.0815 3.7672 46 1 6.9934 1.9687 4.0472 47 1 6.3884 2.1413 2.3842 48 1 5.0977 0.4859 4.5967 49 1 6.0147 -0.1522 3.2123 50 1 3.5642 -0.2760 2.8088 51 1 4.3520 0.8275 1.6540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352727505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:51 Heat of formation + Delta-G solvation = 18.730179 kcal Electronic energy + Delta-G solvation = -32837.114414 eV Core-core repulsion = 28771.372586 eV Total energy + Delta-G solvation = -4065.741827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.22817 -41.97162 -39.46007 -37.22482 -36.85381 -35.83363 -35.26908 -33.65981 -31.49822 -31.29805 -30.64039 -30.18182 -27.66593 -26.94665 -25.02703 -24.11532 -23.92362 -23.55878 -22.47848 -21.36453 -21.07286 -20.36448 -18.70744 -18.35424 -18.26841 -17.75354 -17.21915 -16.96370 -16.47867 -16.36943 -15.74788 -15.63430 -15.40233 -15.12654 -15.04521 -14.84516 -14.73571 -14.37873 -14.21313 -14.01564 -13.68813 -13.46750 -13.40553 -13.12419 -13.09217 -12.90350 -12.74761 -12.55260 -12.44249 -12.31222 -12.23621 -12.16650 -11.87331 -11.76118 -11.70487 -11.52431 -11.32327 -11.30628 -11.23885 -11.06995 -10.57788 -10.15605 -10.01715 -9.78031 -8.20420 -6.32558 0.66456 1.18590 1.42087 1.43775 1.45489 1.56294 1.73533 2.11340 2.41677 2.53595 3.14247 3.21330 3.38955 3.54688 3.63924 3.74058 3.77888 3.97967 4.01801 4.08047 4.10437 4.20025 4.28593 4.32927 4.35873 4.37460 4.40664 4.45741 4.62246 4.64188 4.71610 4.79650 4.80835 4.82845 4.89123 4.96240 5.12393 5.14758 5.15172 5.19259 5.22339 5.27601 5.37851 5.47645 5.49453 5.51815 5.61015 5.75517 5.79286 6.12724 6.17444 6.20597 6.83933 7.05821 7.37589 7.68090 8.91740 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.003008 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.274908 B = 9307.758055 C = 9790.727120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.451 5.451 4 C 0.205 3.795 5 C -0.016 4.016 6 C 0.043 3.957 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.967 3.033 12 H -0.255 1.255 13 H -0.278 1.278 14 H -0.286 1.286 15 N -0.338 5.338 16 N -0.332 5.332 17 C 0.328 3.672 18 N -0.429 5.429 19 C 0.055 3.945 20 C 0.498 3.502 21 O -0.604 6.604 22 N -0.693 5.693 23 C 0.103 3.897 24 H 0.062 0.938 25 C -0.115 4.115 26 C -0.117 4.117 27 C -0.110 4.110 28 C -0.103 4.103 29 C 0.077 3.923 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.000 1.000 39 H -0.024 1.024 40 H 0.262 0.738 41 H 0.092 0.908 42 H 0.166 0.834 43 H 0.400 0.600 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.045 0.955 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.539 -11.429 22.582 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.143 5.143 4 C -0.064 4.064 5 C -0.056 4.056 6 C 0.004 3.996 7 C -0.574 4.574 8 H 0.091 0.909 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.791 3.209 12 H -0.178 1.178 13 H -0.203 1.203 14 H -0.212 1.212 15 N -0.178 5.178 16 N -0.176 5.176 17 C -0.029 4.029 18 N -0.154 5.154 19 C -0.075 4.075 20 C 0.284 3.716 21 O -0.485 6.485 22 N -0.342 5.342 23 C -0.003 4.003 24 H 0.080 0.920 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.148 4.148 28 C -0.142 4.142 29 C -0.030 4.030 30 H 0.153 0.847 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.019 0.981 39 H -0.006 1.006 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.183 0.817 43 H 0.237 0.763 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.115 0.885 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.202 -10.186 22.610 28.093 hybrid contribution -0.677 0.542 -1.401 1.648 sum 12.525 -9.644 21.208 26.452 Atomic orbital electron populations 1.22099 0.93957 1.04265 1.01718 1.22189 0.95870 0.76993 1.06515 1.46529 1.47826 1.14870 1.05096 1.25345 0.99320 0.88797 0.92938 1.20155 1.00461 1.01896 0.83038 1.18859 0.91143 0.94446 0.95114 1.21614 0.99913 1.39221 0.96636 0.90877 1.25987 0.95167 0.95118 1.03452 1.70134 1.04549 1.44390 1.38387 0.85370 0.78838 0.77846 0.78824 1.17805 1.20340 1.21183 1.73977 1.22406 1.17898 1.03553 1.74543 1.19721 1.19627 1.03708 1.22446 1.03439 0.87879 0.89118 1.59464 1.14556 1.46626 0.94727 1.22492 0.94567 0.86692 1.03737 1.21197 0.83186 0.91679 0.75515 1.90729 1.64766 1.40396 1.52613 1.45437 1.05290 1.15571 1.67929 1.21848 0.91729 0.86384 1.00315 0.92021 1.21765 0.93568 1.00242 0.99826 1.21523 0.98660 0.93978 1.01317 1.21522 0.94934 0.97327 1.01017 1.21533 0.96092 0.97578 0.98948 1.22354 0.86731 0.94563 0.99348 0.84741 0.87750 0.91645 0.95314 0.85286 0.87662 0.89562 0.88242 0.98136 1.00555 0.92899 0.88932 0.81671 0.76325 0.89175 0.91195 0.89274 0.93600 0.89248 0.90160 0.88468 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.18 16 2 C 0.11 2.31 6.79 86.38 0.59 2.89 16 3 N -0.45 -13.80 2.81 -514.84 -1.45 -15.25 16 4 C 0.20 7.93 7.32 137.64 1.01 8.94 16 5 C -0.02 -0.63 5.51 29.85 0.16 -0.47 16 6 C 0.04 2.21 4.96 29.85 0.15 2.36 16 7 C -0.54 -29.11 9.11 25.60 0.23 -28.88 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 9 C 0.00 0.04 5.46 84.66 0.46 0.50 16 10 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 11 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 12 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 15 N -0.34 -14.72 12.18 -49.53 -0.60 -15.33 16 16 N -0.33 -12.71 8.48 -58.00 -0.49 -13.20 16 17 C 0.33 9.91 4.98 260.11 1.30 11.20 16 18 N -0.43 -9.15 4.88 -687.96 -3.36 -12.51 16 19 C 0.06 1.28 5.79 85.36 0.49 1.78 16 20 C 0.50 14.51 6.87 87.61 0.60 15.11 16 21 O -0.60 -23.04 17.82 -3.03 -0.05 -23.09 16 22 N -0.69 -16.75 5.02 -446.37 -2.24 -18.99 16 23 C 0.10 2.02 2.06 45.05 0.09 2.12 16 24 H 0.06 1.72 5.85 -2.39 -0.01 1.71 16 25 C -0.12 -1.42 5.61 30.56 0.17 -1.25 16 26 C -0.12 -1.21 5.91 30.62 0.18 -1.02 16 27 C -0.11 -0.87 5.90 30.63 0.18 -0.69 16 28 C -0.10 -1.29 5.28 30.57 0.16 -1.13 16 29 C 0.08 1.20 1.95 44.86 0.09 1.29 16 30 H 0.13 1.36 8.05 -2.39 -0.02 1.34 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 0.96 6.89 -2.39 -0.02 0.95 16 34 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.11 2.16 7.10 -2.39 -0.02 2.15 16 36 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.10 3.33 7.18 -2.38 -0.02 3.31 16 38 H 0.00 0.02 6.89 -2.39 -0.02 0.00 16 39 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 40 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 41 H 0.09 2.62 7.98 -2.39 -0.02 2.60 16 42 H 0.17 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.40 9.32 8.78 -92.71 -0.81 8.51 16 44 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.04 0.70 7.53 -2.39 -0.02 0.68 16 Total: -1.00 -80.81 397.21 0.85 -79.97 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.12 Total: 20.17 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.61 Total: 9.58 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -7.86 Total: -131.78 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -80.81 0.85 -79.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352727505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.695 kcal (2) G-P(sol) polarization free energy of solvation -80.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds