Wall clock time and date at job start Wed Apr 1 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46854 * 111.00448 * 2 1 4 4 C 1.53033 * 109.63431 * 186.20738 * 3 2 1 5 5 C 1.53227 * 109.20731 * 300.39121 * 4 3 2 6 6 C 1.52521 * 109.17860 * 56.81023 * 5 4 3 7 7 C 1.53822 * 110.17404 * 181.45442 * 6 5 4 8 8 C 1.54504 * 104.79872 * 241.11169 * 7 6 5 9 9 N 1.48185 * 104.63194 * 23.78382 * 8 7 6 10 10 C 1.34784 * 127.79663 * 140.69988 * 9 8 7 11 11 O 1.21596 * 119.99578 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99913 * 359.97438 * 10 9 8 13 13 C 1.40197 * 119.99416 * 179.97438 * 12 10 9 14 14 C 1.40398 * 125.97480 * 359.72004 * 13 12 10 15 15 C 1.35248 * 107.86501 * 179.82213 * 14 13 12 16 16 N 1.34966 * 107.85890 * 0.43187 * 15 14 13 17 17 C 1.46495 * 125.97149 * 179.70378 * 16 15 14 18 18 C 1.50707 * 109.46637 * 125.00104 * 17 16 15 19 19 H 1.07993 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99639 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99998 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00276 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47121 * 89.99894 * 22 20 18 24 24 H 1.48496 * 109.47115 * 210.00125 * 22 20 18 25 25 H 1.48500 * 109.47179 * 330.00118 * 22 20 18 26 26 N 1.31211 * 125.96716 * 180.02562 * 13 12 10 27 27 C 1.48243 * 104.39929 * 320.70150 * 9 8 7 28 28 C 1.46952 * 110.99864 * 124.14126 * 2 1 3 29 29 H 1.09004 * 109.46777 * 295.86112 * 1 2 3 30 30 H 1.09005 * 109.46839 * 55.85498 * 1 2 3 31 31 H 1.09000 * 109.47404 * 175.85640 * 1 2 3 32 32 H 1.08998 * 109.44399 * 306.25728 * 3 2 1 33 33 H 1.09007 * 109.44003 * 66.18898 * 3 2 1 34 34 H 1.09008 * 109.51400 * 60.30833 * 4 3 2 35 35 H 1.08993 * 109.51947 * 180.41632 * 4 3 2 36 36 H 1.09002 * 109.51407 * 176.72772 * 5 4 3 37 37 H 1.08995 * 109.51651 * 296.83830 * 5 4 3 38 38 H 1.08998 * 110.36661 * 359.94347 * 7 6 5 39 39 H 1.09003 * 110.36799 * 122.27582 * 7 6 5 40 40 H 1.08995 * 110.40287 * 142.57915 * 8 7 6 41 41 H 1.09004 * 110.40100 * 264.87799 * 8 7 6 42 42 H 0.96994 * 120.00318 * 359.97438 * 12 10 9 43 43 H 1.08002 * 126.06489 * 359.97438 * 14 13 12 44 44 H 1.08004 * 126.06838 * 180.13141 * 15 14 13 45 45 H 1.09002 * 109.46899 * 244.99455 * 17 16 15 46 46 H 1.08996 * 109.47652 * 4.99736 * 17 16 15 47 47 H 0.96995 * 120.00609 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.42747 * 280.40084 * 27 9 8 49 49 H 1.09003 * 110.42819 * 157.92336 * 27 9 8 50 50 H 1.09002 * 109.45420 * 295.14542 * 28 2 1 51 51 H 1.09000 * 109.45384 * 55.10370 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3710 0.0000 4 6 3.5174 1.3374 -0.1558 5 6 4.1259 0.5467 1.0070 6 6 3.5151 -0.8506 1.0368 7 6 4.0840 -1.6532 2.2193 8 6 4.7911 -2.8641 1.5705 9 7 5.1105 -2.4177 0.1941 10 6 6.2278 -2.6680 -0.5171 11 8 6.3418 -2.2282 -1.6450 12 7 7.2186 -3.4058 0.0220 13 6 8.3804 -3.6665 -0.7181 14 6 8.6407 -3.2284 -2.0263 15 6 9.8643 -3.6829 -2.3804 16 7 10.3591 -4.3905 -1.3431 17 6 11.6589 -5.0651 -1.3037 18 6 12.4377 -4.5854 -0.1059 19 1 12.0076 -3.8511 0.5590 20 6 13.6993 -5.0839 0.1408 21 7 14.3791 -4.6649 1.1857 22 14 14.4429 -6.3544 -1.0090 23 1 15.1966 -5.6654 -2.0872 24 1 15.3640 -7.2341 -0.2455 25 1 13.3593 -7.1739 -1.6085 26 7 9.4123 -4.3674 -0.3110 27 6 3.9238 -1.6338 -0.2240 28 6 1.9956 -0.7700 1.1355 29 1 -0.3633 0.4483 0.9248 30 1 -0.3633 0.5769 -0.8506 31 1 -0.3634 -1.0250 -0.0743 32 1 1.5579 1.9276 -0.8288 33 1 1.7380 1.8584 0.9404 34 1 3.7763 0.8556 -1.0988 35 1 3.9068 2.3554 -0.1482 36 1 5.2045 0.4700 0.8702 37 1 3.9133 1.0581 1.9458 38 1 4.7998 -1.0501 2.7777 39 1 3.2784 -1.9891 2.8723 40 1 5.7048 -3.1061 2.1133 41 1 4.1242 -3.7260 1.5474 42 1 7.1278 -3.7563 0.9218 43 1 7.9818 -2.6319 -2.6400 44 1 10.3558 -3.5142 -3.3272 45 1 11.5072 -6.1421 -1.2308 46 1 12.2144 -4.8372 -2.2134 47 1 15.2665 -5.0159 1.3596 48 1 3.1190 -2.2993 -0.5361 49 1 4.1855 -0.9479 -1.0298 50 1 1.7179 -0.2780 2.0677 51 1 1.5767 -1.7761 1.1173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425301902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:46 Heat of formation + Delta-G solvation = 75.127837 kcal Electronic energy + Delta-G solvation = -30719.792699 eV Core-core repulsion = 26656.496457 eV Total energy + Delta-G solvation = -4063.296241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05036 -40.43517 -39.12988 -36.99670 -34.69105 -33.71798 -33.16842 -32.07128 -31.05627 -29.58617 -29.31723 -27.37027 -27.17067 -26.13217 -24.04784 -23.32002 -22.59148 -21.43570 -21.24284 -20.18923 -19.27016 -18.86235 -17.92400 -17.01715 -16.50170 -16.36646 -16.00203 -15.64883 -15.46118 -14.98737 -14.98328 -14.58502 -14.31677 -14.20341 -14.08559 -13.68325 -13.39407 -13.16725 -13.02686 -12.79248 -12.58729 -12.49458 -12.36266 -12.29052 -12.14517 -12.07755 -11.98067 -11.55929 -11.36298 -11.12422 -10.84403 -10.75090 -10.66030 -10.60391 -10.55413 -10.03910 -9.96225 -9.68967 -9.48282 -8.84872 -8.74092 -8.71843 -8.11006 -7.41270 -6.21017 -4.22900 2.31723 2.65149 3.11441 3.17294 3.24408 3.25106 3.42899 3.47222 3.84158 4.08845 4.20331 4.25280 4.28836 4.32032 4.62029 4.72411 4.76402 4.88714 4.96626 5.02717 5.05949 5.07007 5.14425 5.20563 5.27304 5.33599 5.38421 5.45289 5.47209 5.49024 5.51509 5.63332 5.71256 5.75003 5.76217 5.78067 5.87657 6.07311 6.13653 6.29803 6.42609 6.52090 6.64004 6.65438 6.66679 6.77857 7.04729 7.31669 7.49927 7.87289 7.93655 8.37242 8.63283 8.66111 8.89340 9.34210 10.91735 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026655 B = 0.001936 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.211763 B =14456.979850 C =14705.894305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.056 3.944 4 C -0.122 4.122 5 C -0.106 4.106 6 C -0.070 4.070 7 C -0.125 4.125 8 C 0.098 3.902 9 N -0.642 5.642 10 C 0.737 3.263 11 O -0.565 6.565 12 N -0.643 5.643 13 C 0.281 3.719 14 C -0.282 4.282 15 C 0.050 3.950 16 N -0.321 5.321 17 C 0.232 3.768 18 C -0.533 4.533 19 H 0.085 0.915 20 C 0.075 3.925 21 N -0.889 5.889 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.264 1.264 26 N -0.301 5.301 27 C 0.148 3.852 28 C 0.072 3.928 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.406 0.594 43 H 0.163 0.837 44 H 0.168 0.832 45 H 0.041 0.959 46 H 0.049 0.951 47 H 0.268 0.732 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.037 0.963 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.556 9.174 0.362 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.267 5.267 3 C -0.072 4.072 4 C -0.160 4.160 5 C -0.144 4.144 6 C -0.071 4.071 7 C -0.164 4.164 8 C -0.025 4.025 9 N -0.380 5.380 10 C 0.439 3.561 11 O -0.441 6.441 12 N -0.293 5.293 13 C 0.026 3.974 14 C -0.313 4.313 15 C -0.099 4.099 16 N -0.103 5.103 17 C 0.113 3.887 18 C -0.571 4.571 19 H 0.103 0.897 20 C -0.128 4.128 21 N -0.526 5.526 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.189 1.189 26 N -0.132 5.132 27 C 0.025 3.975 28 C -0.056 4.056 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.241 0.759 43 H 0.180 0.820 44 H 0.186 0.814 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.108 0.892 50 H 0.055 0.945 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.417 8.490 0.080 28.701 hybrid contribution -0.069 0.006 0.270 0.278 sum -27.486 8.496 0.349 28.771 Atomic orbital electron populations 1.22349 0.87111 1.02352 1.00426 1.61929 1.07567 1.13981 1.43186 1.22105 0.95846 0.88882 1.00330 1.21692 0.94059 1.00465 0.99769 1.21560 1.00501 0.93841 0.98495 1.21163 0.94425 0.95942 0.95577 1.22568 1.00387 0.96482 0.96946 1.22395 1.00217 0.97129 0.82769 1.48044 1.17061 1.56716 1.16227 1.14991 0.78445 0.79065 0.83594 1.90866 1.79417 1.56318 1.17458 1.41398 1.14875 1.54757 1.18258 1.18786 0.87331 0.99534 0.91741 1.21540 0.99090 1.13914 0.96797 1.22544 0.95336 0.97277 0.94721 1.48571 1.14547 1.38880 1.08295 1.20026 0.76024 0.93042 0.99574 1.21120 1.00232 1.26392 1.09347 0.89660 1.24839 0.96495 0.96193 0.95301 1.69872 1.12467 1.43134 1.27120 0.86902 0.79914 0.82028 0.81236 1.19730 1.20576 1.18857 1.77380 0.98621 1.24962 1.12245 1.22140 0.85284 0.93612 0.96430 1.22081 0.93456 0.98562 0.91530 0.95812 0.91293 0.91262 0.90737 0.95028 0.90448 0.91260 0.91138 0.91996 0.90341 0.90104 0.90497 0.90832 0.75892 0.82012 0.81442 0.94093 0.93355 0.92225 0.91007 0.89238 0.94455 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.60 60.06 0.58 0.71 16 2 N -0.54 -3.74 4.65 -243.22 -1.13 -4.87 16 3 C 0.06 0.37 5.45 -3.83 -0.02 0.35 16 4 C -0.12 -0.92 5.88 -26.60 -0.16 -1.08 16 5 C -0.11 -0.84 4.54 -26.86 -0.12 -0.96 16 6 C -0.07 -0.51 0.68 -154.10 -0.11 -0.62 16 7 C -0.12 -0.80 6.29 -25.51 -0.16 -0.96 16 8 C 0.10 0.79 6.92 -2.33 -0.02 0.77 16 9 N -0.64 -7.46 3.32 -175.10 -0.58 -8.05 16 10 C 0.74 11.80 8.54 -86.91 -0.74 11.06 16 11 O -0.57 -10.80 13.74 5.28 0.07 -10.73 16 12 N -0.64 -10.72 5.43 -15.50 -0.08 -10.81 16 13 C 0.28 5.83 8.11 -154.36 -1.25 4.58 16 14 C -0.28 -5.73 9.61 -39.83 -0.38 -6.11 16 15 C 0.05 1.00 11.44 -17.24 -0.20 0.81 16 16 N -0.32 -7.44 3.67 -62.56 -0.23 -7.67 16 17 C 0.23 5.59 5.33 -5.19 -0.03 5.57 16 18 C -0.53 -15.19 9.79 -34.44 -0.34 -15.53 16 19 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 20 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 22 Si 0.87 20.31 27.47 -169.99 -4.67 15.64 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 26 N -0.30 -7.08 12.42 31.44 0.39 -6.69 16 27 C 0.15 1.47 5.70 -2.59 -0.01 1.46 16 28 C 0.07 0.45 3.84 -4.06 -0.02 0.43 16 29 H 0.02 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.03 0.20 8.14 -51.92 -0.42 -0.22 16 34 H 0.08 0.70 6.47 -51.92 -0.34 0.37 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.52 7.70 -51.93 -0.40 0.13 16 39 H 0.08 0.37 7.70 -51.93 -0.40 -0.03 16 40 H 0.08 0.59 6.87 -51.93 -0.36 0.23 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.41 5.71 7.22 -40.82 -0.29 5.42 16 43 H 0.16 3.24 5.91 -52.49 -0.31 2.93 16 44 H 0.17 2.64 8.06 -52.48 -0.42 2.22 16 45 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 46 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 47 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.07 0.69 7.81 -51.93 -0.41 0.28 16 49 H 0.09 1.07 5.86 -51.93 -0.30 0.76 16 50 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 51 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -34.59 396.61 -10.78 -45.37 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.22 Total: 5.33 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -3.07 Total: 2.51 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -0.86 Total: -64.10 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.59 -10.78 -45.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425301902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.498 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds