Wall clock time and date at job start Wed Apr 1 2020 05:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46854 * 111.00448 * 2 1 4 4 C 1.53033 * 109.63431 * 186.20738 * 3 2 1 5 5 C 1.53227 * 109.20731 * 300.39121 * 4 3 2 6 6 C 1.52521 * 109.17860 * 56.81023 * 5 4 3 7 7 C 1.53822 * 110.17404 * 181.45442 * 6 5 4 8 8 C 1.54504 * 104.79872 * 241.11169 * 7 6 5 9 9 N 1.48185 * 104.63194 * 23.78382 * 8 7 6 10 10 C 1.34784 * 127.79663 * 140.69988 * 9 8 7 11 11 O 1.21596 * 119.99578 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99913 * 359.97438 * 10 9 8 13 13 C 1.40197 * 119.99416 * 179.97438 * 12 10 9 14 14 C 1.40398 * 125.97480 * 359.72004 * 13 12 10 15 15 C 1.35248 * 107.86501 * 179.82213 * 14 13 12 16 16 N 1.34966 * 107.85890 * 0.43187 * 15 14 13 17 17 C 1.46495 * 125.97149 * 179.70378 * 16 15 14 18 18 C 1.50707 * 109.46637 * 125.00104 * 17 16 15 19 19 H 1.07993 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99639 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99998 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00276 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47121 * 89.99894 * 22 20 18 24 24 H 1.48496 * 109.47115 * 210.00125 * 22 20 18 25 25 H 1.48500 * 109.47179 * 330.00118 * 22 20 18 26 26 N 1.31211 * 125.96716 * 180.02562 * 13 12 10 27 27 C 1.48243 * 104.39929 * 320.70150 * 9 8 7 28 28 C 1.46952 * 110.99864 * 124.14126 * 2 1 3 29 29 H 1.09004 * 109.46777 * 295.86112 * 1 2 3 30 30 H 1.09005 * 109.46839 * 55.85498 * 1 2 3 31 31 H 1.09000 * 109.47404 * 175.85640 * 1 2 3 32 32 H 1.08998 * 109.44399 * 306.25728 * 3 2 1 33 33 H 1.09007 * 109.44003 * 66.18898 * 3 2 1 34 34 H 1.09008 * 109.51400 * 60.30833 * 4 3 2 35 35 H 1.08993 * 109.51947 * 180.41632 * 4 3 2 36 36 H 1.09002 * 109.51407 * 176.72772 * 5 4 3 37 37 H 1.08995 * 109.51651 * 296.83830 * 5 4 3 38 38 H 1.08998 * 110.36661 * 359.94347 * 7 6 5 39 39 H 1.09003 * 110.36799 * 122.27582 * 7 6 5 40 40 H 1.08995 * 110.40287 * 142.57915 * 8 7 6 41 41 H 1.09004 * 110.40100 * 264.87799 * 8 7 6 42 42 H 0.96994 * 120.00318 * 359.97438 * 12 10 9 43 43 H 1.08002 * 126.06489 * 359.97438 * 14 13 12 44 44 H 1.08004 * 126.06838 * 180.13141 * 15 14 13 45 45 H 1.09002 * 109.46899 * 244.99455 * 17 16 15 46 46 H 1.08996 * 109.47652 * 4.99736 * 17 16 15 47 47 H 0.96995 * 120.00609 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.42747 * 280.40084 * 27 9 8 49 49 H 1.09003 * 110.42819 * 157.92336 * 27 9 8 50 50 H 1.09002 * 109.45420 * 295.14542 * 28 2 1 51 51 H 1.09000 * 109.45384 * 55.10370 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3710 0.0000 4 6 3.5174 1.3374 -0.1558 5 6 4.1259 0.5467 1.0070 6 6 3.5151 -0.8506 1.0368 7 6 4.0840 -1.6532 2.2193 8 6 4.7911 -2.8641 1.5705 9 7 5.1105 -2.4177 0.1941 10 6 6.2278 -2.6680 -0.5171 11 8 6.3418 -2.2282 -1.6450 12 7 7.2186 -3.4058 0.0220 13 6 8.3804 -3.6665 -0.7181 14 6 8.6407 -3.2284 -2.0263 15 6 9.8643 -3.6829 -2.3804 16 7 10.3591 -4.3905 -1.3431 17 6 11.6589 -5.0651 -1.3037 18 6 12.4377 -4.5854 -0.1059 19 1 12.0076 -3.8511 0.5590 20 6 13.6993 -5.0839 0.1408 21 7 14.3791 -4.6649 1.1857 22 14 14.4429 -6.3544 -1.0090 23 1 15.1966 -5.6654 -2.0872 24 1 15.3640 -7.2341 -0.2455 25 1 13.3593 -7.1739 -1.6085 26 7 9.4123 -4.3674 -0.3110 27 6 3.9238 -1.6338 -0.2240 28 6 1.9956 -0.7700 1.1355 29 1 -0.3633 0.4483 0.9248 30 1 -0.3633 0.5769 -0.8506 31 1 -0.3634 -1.0250 -0.0743 32 1 1.5579 1.9276 -0.8288 33 1 1.7380 1.8584 0.9404 34 1 3.7763 0.8556 -1.0988 35 1 3.9068 2.3554 -0.1482 36 1 5.2045 0.4700 0.8702 37 1 3.9133 1.0581 1.9458 38 1 4.7998 -1.0501 2.7777 39 1 3.2784 -1.9891 2.8723 40 1 5.7048 -3.1061 2.1133 41 1 4.1242 -3.7260 1.5474 42 1 7.1278 -3.7563 0.9218 43 1 7.9818 -2.6319 -2.6400 44 1 10.3558 -3.5142 -3.3272 45 1 11.5072 -6.1421 -1.2308 46 1 12.2144 -4.8372 -2.2134 47 1 15.2665 -5.0159 1.3596 48 1 3.1190 -2.2993 -0.5361 49 1 4.1855 -0.9479 -1.0298 50 1 1.7179 -0.2780 2.0677 51 1 1.5767 -1.7761 1.1173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425301902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:45 Heat of formation + Delta-G solvation = 51.502907 kcal Electronic energy + Delta-G solvation = -30720.817153 eV Core-core repulsion = 26656.496457 eV Total energy + Delta-G solvation = -4064.320695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.29815 -41.57679 -40.23922 -37.77640 -36.21891 -35.22230 -34.32186 -33.19057 -32.50228 -30.97157 -30.24586 -29.07301 -27.68345 -27.17553 -24.88490 -24.36458 -23.85212 -22.72204 -21.98121 -21.77452 -20.61167 -19.53741 -19.09870 -19.05808 -18.06326 -17.23441 -17.13496 -16.63589 -16.40586 -16.18309 -16.03889 -15.76989 -15.34296 -15.26448 -14.89625 -14.83102 -14.74857 -14.37567 -14.22845 -13.90533 -13.83722 -13.76525 -13.37924 -13.09838 -13.02867 -12.93020 -12.76446 -12.60907 -12.52231 -12.31242 -12.16866 -11.93932 -11.82790 -11.63300 -11.51348 -11.47898 -11.24548 -11.16858 -11.06602 -10.86215 -9.91332 -9.69861 -9.20185 -9.02174 -8.36753 -6.46888 1.01007 1.08666 1.37280 1.40410 1.50183 1.67855 2.01011 2.29729 2.37866 2.86660 2.95781 2.98810 3.58142 3.60040 3.68242 3.92806 4.04583 4.13754 4.16541 4.21622 4.31392 4.40622 4.48355 4.54142 4.59673 4.60887 4.63882 4.66691 4.76236 4.79423 4.81158 4.85500 4.88092 4.92763 4.94474 4.99183 5.04842 5.07040 5.10691 5.14164 5.18209 5.25074 5.28929 5.42931 5.48826 5.83057 5.92747 6.02052 6.17039 6.19184 6.42034 6.57564 6.65962 7.07746 7.16001 7.37988 8.80358 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026655 B = 0.001936 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.211763 B =14456.979850 C =14705.894305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.559 5.559 3 C 0.061 3.939 4 C -0.121 4.121 5 C -0.105 4.105 6 C -0.062 4.062 7 C -0.117 4.117 8 C 0.091 3.909 9 N -0.636 5.636 10 C 0.732 3.268 11 O -0.602 6.602 12 N -0.637 5.637 13 C 0.285 3.715 14 C -0.295 4.295 15 C 0.063 3.937 16 N -0.344 5.344 17 C 0.239 3.761 18 C -0.546 4.546 19 H 0.025 0.975 20 C 0.013 3.987 21 N -0.942 5.942 22 Si 0.956 3.044 23 H -0.253 1.253 24 H -0.281 1.281 25 H -0.239 1.239 26 N -0.349 5.349 27 C 0.148 3.852 28 C 0.076 3.924 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.416 0.584 43 H 0.165 0.835 44 H 0.212 0.788 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.272 0.728 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.221 8.276 -0.379 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.067 4.067 4 C -0.159 4.159 5 C -0.142 4.142 6 C -0.063 4.063 7 C -0.156 4.156 8 C -0.031 4.031 9 N -0.374 5.374 10 C 0.434 3.566 11 O -0.480 6.480 12 N -0.289 5.289 13 C 0.029 3.971 14 C -0.326 4.326 15 C -0.085 4.085 16 N -0.126 5.126 17 C 0.120 3.880 18 C -0.584 4.584 19 H 0.044 0.956 20 C -0.185 4.185 21 N -0.581 5.581 22 Si 0.777 3.223 23 H -0.178 1.178 24 H -0.206 1.206 25 H -0.162 1.162 26 N -0.180 5.180 27 C 0.026 3.974 28 C -0.052 4.052 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.253 0.747 43 H 0.182 0.818 44 H 0.228 0.772 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.083 0.917 50 H 0.067 0.933 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.164 7.611 -0.623 30.147 hybrid contribution 0.308 0.424 0.575 0.778 sum -28.856 8.035 -0.047 29.954 Atomic orbital electron populations 1.22360 0.86023 1.02842 1.00836 1.61924 1.08635 1.14045 1.43772 1.22044 0.94715 0.89134 1.00817 1.21659 0.95213 1.00405 0.98617 1.21530 0.98888 0.94615 0.99185 1.21115 0.95605 0.95107 0.94507 1.22573 1.01006 0.95383 0.96607 1.22734 1.01074 0.98715 0.80617 1.48109 1.15897 1.55923 1.17446 1.15159 0.79144 0.78804 0.83527 1.90822 1.80347 1.57658 1.19212 1.41410 1.14049 1.54925 1.18536 1.19112 0.87611 0.98103 0.92226 1.21712 0.99654 1.14405 0.96830 1.23230 0.94954 0.95078 0.95273 1.48492 1.14527 1.40385 1.09232 1.19895 0.76293 0.93200 0.98642 1.21229 1.01176 1.25613 1.10412 0.95611 1.25934 0.96699 0.98673 0.97225 1.70048 1.13207 1.45148 1.29699 0.85603 0.79324 0.78629 0.78744 1.17756 1.20598 1.16248 1.77297 0.99801 1.27217 1.13689 1.22260 0.84502 0.93408 0.97250 1.22068 0.92022 0.99280 0.91822 0.95152 0.91167 0.90709 0.90441 0.94293 0.92586 0.90855 0.93753 0.90624 0.90557 0.87117 0.90316 0.88601 0.74651 0.81767 0.77157 0.93621 0.90003 0.91892 0.90233 0.91715 0.93288 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.60 127.69 1.23 1.46 16 2 N -0.56 -6.74 4.65 -923.40 -4.29 -11.03 16 3 C 0.06 0.73 5.45 86.32 0.47 1.20 16 4 C -0.12 -1.83 5.88 30.68 0.18 -1.65 16 5 C -0.10 -1.59 4.54 30.51 0.14 -1.46 16 6 C -0.06 -0.82 0.68 -51.91 -0.04 -0.85 16 7 C -0.12 -1.22 6.29 31.38 0.20 -1.02 16 8 C 0.09 1.30 6.92 86.57 0.60 1.90 16 9 N -0.64 -14.65 3.32 -826.15 -2.74 -17.39 16 10 C 0.73 23.89 8.54 179.05 1.53 25.41 16 11 O -0.60 -23.72 13.74 -4.02 -0.06 -23.78 16 12 N -0.64 -21.73 5.43 -321.22 -1.74 -23.48 16 13 C 0.29 12.10 8.11 133.31 1.08 13.18 16 14 C -0.29 -12.01 9.61 22.11 0.21 -11.80 16 15 C 0.06 2.42 11.44 83.52 0.96 3.38 16 16 N -0.34 -15.94 3.67 -351.84 -1.29 -17.23 16 17 C 0.24 11.30 5.33 85.64 0.46 11.75 16 18 C -0.55 -31.97 9.79 25.60 0.25 -31.72 16 19 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 20 C 0.01 0.77 5.47 84.66 0.46 1.23 16 21 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 22 Si 0.96 41.10 27.47 68.60 1.88 42.98 16 23 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 26 N -0.35 -16.85 12.42 -54.44 -0.68 -17.52 16 27 C 0.15 2.88 5.70 86.36 0.49 3.38 16 28 C 0.08 0.75 3.84 86.12 0.33 1.08 16 29 H 0.03 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.07 0.58 8.09 -2.38 -0.02 0.56 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.04 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.06 1.09 6.47 -2.38 -0.02 1.07 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.87 7.70 -2.39 -0.02 0.86 16 39 H 0.11 0.57 7.70 -2.39 -0.02 0.55 16 40 H 0.08 1.12 6.87 -2.39 -0.02 1.10 16 41 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.42 11.94 7.22 -92.71 -0.67 11.27 16 43 H 0.17 6.64 5.91 -2.91 -0.02 6.62 16 44 H 0.21 5.99 8.06 -2.91 -0.02 5.97 16 45 H 0.05 2.11 7.20 -2.39 -0.02 2.09 16 46 H 0.08 3.31 7.50 -2.39 -0.02 3.30 16 47 H 0.27 15.54 8.31 -92.71 -0.77 14.76 16 48 H 0.08 1.44 7.81 -2.39 -0.02 1.42 16 49 H 0.06 1.61 5.86 -2.39 -0.01 1.60 16 50 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.09 0.72 8.08 -2.39 -0.02 0.71 16 Total: -1.00 -79.84 396.61 0.14 -79.70 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.21 Total: 30.46 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 8.55 Total: 15.47 kcal Atomic # 7 Polarization: -134.39 SS G_CDS: -10.45 Total: -144.84 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.06 Total: -23.78 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.88 Total: 42.98 kcal Total: -79.84 0.14 -79.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425301902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.203 kcal (2) G-P(sol) polarization free energy of solvation -79.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds