Wall clock time and date at job start Wed Apr 1 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 110.99767 * 2 1 4 4 C 1.38264 * 111.00536 * 123.95219 * 2 1 3 5 5 N 1.32420 * 119.82972 * 304.04559 * 4 2 1 6 6 C 1.31851 * 121.77923 * 179.97438 * 5 4 2 7 7 C 1.38364 * 121.21659 * 0.02723 * 6 5 4 8 8 C 1.38336 * 119.50892 * 359.71579 * 7 6 5 9 9 C 1.39976 * 118.36546 * 0.52187 * 8 7 6 10 10 C 1.47426 * 120.60720 * 179.75850 * 9 8 7 11 11 O 1.21607 * 119.99848 * 185.69473 * 10 9 8 12 12 N 1.34780 * 120.00339 * 5.68701 * 10 9 8 13 13 C 1.46496 * 120.00204 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47406 * 180.02562 * 13 12 10 15 15 N 1.46894 * 109.47509 * 180.02562 * 14 13 12 16 16 C 1.46900 * 111.00131 * 170.00025 * 15 14 13 17 17 C 1.53242 * 109.34122 * 172.74536 * 16 15 14 18 18 N 1.47077 * 108.51995 * 53.82827 * 17 16 15 19 19 C 1.36938 * 120.88004 * 128.79082 * 18 17 16 20 20 H 1.08002 * 120.00029 * 210.22397 * 19 18 17 21 21 C 1.38811 * 119.99675 * 30.22956 * 19 18 17 22 22 N 1.31620 * 120.00209 * 10.68398 * 21 19 18 23 23 Si 1.86805 * 119.99937 * 190.68933 * 21 19 18 24 24 H 1.48505 * 109.47051 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47239 * 119.99633 * 23 21 19 26 26 H 1.48496 * 109.47135 * 240.00217 * 23 21 19 27 27 C 1.47075 * 118.23982 * 308.81789 * 18 17 16 28 28 C 1.46901 * 111.00164 * 45.70016 * 15 14 13 29 29 H 1.08999 * 109.46911 * 296.03879 * 1 2 3 30 30 H 1.08998 * 109.47409 * 56.04806 * 1 2 3 31 31 H 1.09005 * 109.46821 * 176.04690 * 1 2 3 32 32 H 1.08998 * 109.47244 * 178.97107 * 3 2 1 33 33 H 1.09003 * 109.47352 * 298.97226 * 3 2 1 34 34 H 1.09004 * 109.46919 * 58.96714 * 3 2 1 35 35 H 1.08007 * 119.39086 * 180.02562 * 6 5 4 36 36 H 1.08001 * 120.24750 * 179.97438 * 7 6 5 37 37 H 1.08003 * 120.82031 * 180.28302 * 8 7 6 38 38 H 0.96998 * 119.99418 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.47357 * 59.99877 * 13 12 10 40 40 H 1.08998 * 109.47020 * 300.00416 * 13 12 10 41 41 H 1.09002 * 109.47066 * 59.99573 * 14 13 12 42 42 H 1.09000 * 109.46943 * 300.00563 * 14 13 12 43 43 H 1.09000 * 109.49168 * 52.78897 * 16 15 14 44 44 H 1.08998 * 109.49446 * 292.70576 * 16 15 14 45 45 H 1.08993 * 109.63044 * 173.54122 * 17 16 15 46 46 H 1.09000 * 109.62589 * 293.92909 * 17 16 15 47 47 H 0.97002 * 119.99822 * 179.97438 * 22 21 19 48 48 H 1.09009 * 109.63209 * 170.89424 * 27 18 17 49 49 H 1.08999 * 109.63332 * 291.47340 * 27 18 17 50 50 H 1.08998 * 109.49634 * 67.28978 * 28 15 14 51 51 H 1.09002 * 109.48967 * 307.21511 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9646 -0.7209 1.0707 5 7 1.6003 -0.4035 2.3036 6 6 2.0488 -1.0651 3.3522 7 6 2.9255 -2.1260 3.2096 8 6 3.3360 -2.5053 1.9442 9 6 2.8522 -1.7866 0.8448 10 6 3.2616 -2.1449 -0.5254 11 8 2.9186 -1.4514 -1.4635 12 7 4.0162 -3.2412 -0.7383 13 6 4.4235 -3.5970 -2.0998 14 6 5.2658 -4.8737 -2.0630 15 7 5.6747 -5.2301 -3.4282 16 6 6.6743 -6.3065 -3.4142 17 6 6.9391 -6.7719 -4.8500 18 7 7.2987 -5.5997 -5.6623 19 6 8.4278 -5.6011 -6.4370 20 1 8.9525 -4.6767 -6.6285 21 6 8.8980 -6.7906 -6.9763 22 7 8.1553 -7.8759 -6.9239 23 14 10.5849 -6.8510 -7.7764 24 1 11.2141 -5.5076 -7.7071 25 1 11.4371 -7.8346 -7.0612 26 1 10.4445 -7.2585 -9.1975 27 6 6.4137 -4.4257 -5.6200 28 6 6.1697 -4.0527 -4.1538 29 1 -0.3633 0.4511 0.9234 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0848 1.3425 0.0185 33 1 1.6608 1.8891 -0.8991 34 1 1.6309 1.9005 0.8806 35 1 1.7259 -0.7735 4.3408 36 1 3.2834 -2.6567 4.0795 37 1 4.0162 -3.3331 1.8080 38 1 4.2896 -3.7945 0.0100 39 1 5.0122 -2.7851 -2.5269 40 1 3.5374 -3.7642 -2.7121 41 1 4.6767 -5.6854 -1.6361 42 1 6.1519 -4.7068 -1.4505 43 1 6.3000 -7.1429 -2.8240 44 1 7.6009 -5.9367 -2.9750 45 1 7.7605 -7.4883 -4.8572 46 1 6.0416 -7.2399 -5.2546 47 1 8.4837 -8.7071 -7.3011 48 1 6.8878 -3.5908 -6.1362 49 1 5.4647 -4.6650 -6.0997 50 1 7.1032 -3.7142 -3.7044 51 1 5.4293 -3.2545 -4.1000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479941652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:31 Heat of formation + Delta-G solvation = 69.212276 kcal Electronic energy + Delta-G solvation = -30364.351354 eV Core-core repulsion = 26300.798594 eV Total energy + Delta-G solvation = -4063.552759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22077 -39.28372 -38.15682 -37.25154 -35.35456 -34.00106 -32.97673 -31.36463 -31.01178 -30.11926 -28.61094 -27.85686 -26.19494 -25.28910 -24.71670 -23.52159 -22.47942 -21.96499 -21.17866 -20.82713 -19.10083 -18.12762 -17.35360 -17.15643 -16.79791 -15.86871 -15.81013 -15.35897 -15.33682 -14.96589 -14.74640 -14.37404 -14.35652 -14.13897 -13.87275 -13.69425 -13.43458 -13.42709 -13.22955 -13.02315 -12.93798 -12.49652 -12.40992 -12.24302 -11.97348 -11.65327 -11.37290 -11.31260 -10.98158 -10.75092 -10.44580 -10.37873 -10.32530 -10.27323 -10.05793 -9.95598 -9.75797 -9.59626 -9.42971 -9.05756 -8.72053 -8.50776 -7.85535 -6.59392 -5.76527 -3.22823 0.25445 0.66088 2.70666 2.92498 3.30959 3.37155 3.44700 3.44922 3.46858 3.99687 4.26755 4.34617 4.44768 4.51113 4.60415 4.67158 4.86946 5.00012 5.08357 5.10168 5.15592 5.27511 5.29943 5.42024 5.45171 5.45446 5.52583 5.56572 5.62753 5.64465 5.84494 5.89356 5.92506 5.95582 6.04920 6.16138 6.24376 6.29209 6.38956 6.53480 6.55477 6.71876 6.93512 6.97053 7.25716 7.30972 7.43574 7.56616 7.65492 7.72683 7.82417 8.17411 8.47779 9.24001 9.85486 10.45702 11.32052 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.001841 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.482912 B =15207.472158 C =15796.179836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.476 5.476 3 C 0.039 3.961 4 C 0.348 3.652 5 N -0.518 5.518 6 C 0.132 3.868 7 C -0.184 4.184 8 C -0.042 4.042 9 C -0.157 4.157 10 C 0.556 3.444 11 O -0.491 6.491 12 N -0.730 5.730 13 C 0.119 3.881 14 C 0.044 3.956 15 N -0.527 5.527 16 C 0.036 3.964 17 C 0.179 3.821 18 N -0.596 5.596 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.906 5.906 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.148 3.852 28 C 0.035 3.965 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.394 0.606 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.089 0.911 46 H 0.027 0.973 47 H 0.253 0.747 48 H 0.056 0.944 49 H 0.027 0.973 50 H 0.028 0.972 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.858 12.205 23.429 29.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.198 5.198 3 C -0.108 4.108 4 C 0.118 3.882 5 N -0.230 5.230 6 C -0.027 4.027 7 C -0.204 4.204 8 C -0.068 4.068 9 C -0.164 4.164 10 C 0.341 3.659 11 O -0.364 6.364 12 N -0.384 5.384 13 C -0.004 4.004 14 C -0.085 4.085 15 N -0.253 5.253 16 C -0.093 4.093 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.550 5.550 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.021 3.979 28 C -0.095 4.095 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.228 0.772 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.107 0.893 46 H 0.045 0.955 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.045 0.955 50 H 0.046 0.954 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.890 12.876 22.018 29.044 hybrid contribution 2.042 -0.564 1.153 2.412 sum -11.847 12.312 23.171 28.790 Atomic orbital electron populations 1.22373 0.85111 1.02604 1.01438 1.59911 1.09166 1.14946 1.35738 1.22320 1.00617 0.86423 1.01429 1.19868 0.90237 0.90749 0.87296 1.67907 1.25671 1.29850 0.99552 1.22793 0.91801 0.90730 0.97363 1.22095 1.00355 0.99726 0.98181 1.21821 0.96031 0.97141 0.91854 1.20812 1.02072 0.98767 0.94733 1.17723 0.79040 0.81144 0.88007 1.90872 1.52702 1.50019 1.42794 1.45912 1.54408 1.27982 1.10104 1.21551 0.99636 0.96978 0.82275 1.22254 0.97758 0.96256 0.92194 1.62025 1.41669 1.09478 1.12112 1.22939 0.91539 0.92711 1.02107 1.20861 0.99737 0.89711 0.84418 1.44090 1.24762 1.12611 1.50483 1.19233 1.00582 0.94203 1.23971 0.91746 1.25158 0.98810 0.97035 0.98668 1.69982 1.35803 1.00482 1.48766 0.86188 0.83949 0.77529 0.78901 1.20303 1.21635 1.21637 1.20999 0.94068 0.91093 0.91696 1.22800 0.97298 0.91742 0.97623 0.94075 0.90442 0.91627 0.91543 0.90254 0.94562 0.82318 0.83903 0.84043 0.77214 0.90812 0.90323 0.90710 0.95055 0.92114 0.95641 0.89257 0.95486 0.93656 0.92587 0.95528 0.95413 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.40 60.06 0.56 0.87 16 2 N -0.48 -5.50 2.97 -188.74 -0.56 -6.06 16 3 C 0.04 0.38 9.46 60.07 0.57 0.95 16 4 C 0.35 3.87 5.33 -155.19 -0.83 3.04 16 5 N -0.52 -5.08 9.57 -12.20 -0.12 -5.20 16 6 C 0.13 0.90 11.16 -17.50 -0.20 0.70 16 7 C -0.18 -1.02 10.09 -39.50 -0.40 -1.41 16 8 C -0.04 -0.29 9.63 -38.89 -0.37 -0.66 16 9 C -0.16 -1.63 5.91 -104.65 -0.62 -2.25 16 10 C 0.56 6.96 7.75 -12.52 -0.10 6.87 16 11 O -0.49 -7.90 15.09 5.27 0.08 -7.82 16 12 N -0.73 -7.67 5.51 -61.39 -0.34 -8.01 16 13 C 0.12 1.51 4.93 -4.05 -0.02 1.49 16 14 C 0.04 0.58 5.38 -3.83 -0.02 0.56 16 15 N -0.53 -9.19 4.78 -234.33 -1.12 -10.31 16 16 C 0.04 0.69 5.58 -3.70 -0.02 0.67 16 17 C 0.18 4.31 5.36 -3.60 -0.02 4.29 16 18 N -0.60 -15.24 3.03 -172.02 -0.52 -15.76 16 19 C -0.25 -6.93 9.63 -15.06 -0.14 -7.07 16 20 H 0.06 1.76 7.85 -52.49 -0.41 1.35 16 21 C 0.00 0.04 5.06 -17.43 -0.09 -0.04 16 22 N -0.91 -26.34 11.04 55.49 0.61 -25.72 16 23 Si 0.90 21.75 29.57 -169.99 -5.03 16.73 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.15 3.21 6.69 -3.61 -0.02 3.19 16 28 C 0.03 0.63 5.04 -3.70 -0.02 0.61 16 29 H 0.04 0.38 7.76 -51.93 -0.40 -0.03 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.33 8.10 -51.93 -0.42 -0.09 16 35 H 0.16 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 37 H 0.14 0.59 6.55 -52.48 -0.34 0.25 16 38 H 0.39 2.93 6.60 -40.82 -0.27 2.66 16 39 H 0.07 1.03 6.18 -51.93 -0.32 0.71 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 43 H 0.06 1.03 8.11 -51.93 -0.42 0.61 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 2.38 6.19 -51.93 -0.32 2.05 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.06 1.17 7.95 -51.92 -0.41 0.76 16 49 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.07 1.13 5.73 -51.93 -0.30 0.83 16 LS Contribution 404.18 15.07 6.09 6.09 Total: -1.00 -33.97 404.18 -10.88 -44.85 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.25 Total: -0.60 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -1.73 Total: 11.80 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -2.04 Total: -71.06 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.08 Total: -7.82 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.97 -10.88 -44.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479941652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.067 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds