Wall clock time and date at job start Wed Apr 1 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 110.99767 * 2 1 4 4 C 1.38264 * 111.00536 * 123.95219 * 2 1 3 5 5 N 1.32420 * 119.82972 * 304.04559 * 4 2 1 6 6 C 1.31851 * 121.77923 * 179.97438 * 5 4 2 7 7 C 1.38364 * 121.21659 * 0.02723 * 6 5 4 8 8 C 1.38336 * 119.50892 * 359.71579 * 7 6 5 9 9 C 1.39976 * 118.36546 * 0.52187 * 8 7 6 10 10 C 1.47426 * 120.60720 * 179.75850 * 9 8 7 11 11 O 1.21607 * 119.99848 * 185.69473 * 10 9 8 12 12 N 1.34780 * 120.00339 * 5.68701 * 10 9 8 13 13 C 1.46496 * 120.00204 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47406 * 180.02562 * 13 12 10 15 15 N 1.46894 * 109.47509 * 180.02562 * 14 13 12 16 16 C 1.46900 * 111.00131 * 170.00025 * 15 14 13 17 17 C 1.53242 * 109.34122 * 172.74536 * 16 15 14 18 18 N 1.47077 * 108.51995 * 53.82827 * 17 16 15 19 19 C 1.36938 * 120.88004 * 128.79082 * 18 17 16 20 20 H 1.08002 * 120.00029 * 210.22397 * 19 18 17 21 21 C 1.38811 * 119.99675 * 30.22956 * 19 18 17 22 22 N 1.31620 * 120.00209 * 10.68398 * 21 19 18 23 23 Si 1.86805 * 119.99937 * 190.68933 * 21 19 18 24 24 H 1.48505 * 109.47051 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47239 * 119.99633 * 23 21 19 26 26 H 1.48496 * 109.47135 * 240.00217 * 23 21 19 27 27 C 1.47075 * 118.23982 * 308.81789 * 18 17 16 28 28 C 1.46901 * 111.00164 * 45.70016 * 15 14 13 29 29 H 1.08999 * 109.46911 * 296.03879 * 1 2 3 30 30 H 1.08998 * 109.47409 * 56.04806 * 1 2 3 31 31 H 1.09005 * 109.46821 * 176.04690 * 1 2 3 32 32 H 1.08998 * 109.47244 * 178.97107 * 3 2 1 33 33 H 1.09003 * 109.47352 * 298.97226 * 3 2 1 34 34 H 1.09004 * 109.46919 * 58.96714 * 3 2 1 35 35 H 1.08007 * 119.39086 * 180.02562 * 6 5 4 36 36 H 1.08001 * 120.24750 * 179.97438 * 7 6 5 37 37 H 1.08003 * 120.82031 * 180.28302 * 8 7 6 38 38 H 0.96998 * 119.99418 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.47357 * 59.99877 * 13 12 10 40 40 H 1.08998 * 109.47020 * 300.00416 * 13 12 10 41 41 H 1.09002 * 109.47066 * 59.99573 * 14 13 12 42 42 H 1.09000 * 109.46943 * 300.00563 * 14 13 12 43 43 H 1.09000 * 109.49168 * 52.78897 * 16 15 14 44 44 H 1.08998 * 109.49446 * 292.70576 * 16 15 14 45 45 H 1.08993 * 109.63044 * 173.54122 * 17 16 15 46 46 H 1.09000 * 109.62589 * 293.92909 * 17 16 15 47 47 H 0.97002 * 119.99822 * 179.97438 * 22 21 19 48 48 H 1.09009 * 109.63209 * 170.89424 * 27 18 17 49 49 H 1.08999 * 109.63332 * 291.47340 * 27 18 17 50 50 H 1.08998 * 109.49634 * 67.28978 * 28 15 14 51 51 H 1.09002 * 109.48967 * 307.21511 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9646 -0.7209 1.0707 5 7 1.6003 -0.4035 2.3036 6 6 2.0488 -1.0651 3.3522 7 6 2.9255 -2.1260 3.2096 8 6 3.3360 -2.5053 1.9442 9 6 2.8522 -1.7866 0.8448 10 6 3.2616 -2.1449 -0.5254 11 8 2.9186 -1.4514 -1.4635 12 7 4.0162 -3.2412 -0.7383 13 6 4.4235 -3.5970 -2.0998 14 6 5.2658 -4.8737 -2.0630 15 7 5.6747 -5.2301 -3.4282 16 6 6.6743 -6.3065 -3.4142 17 6 6.9391 -6.7719 -4.8500 18 7 7.2987 -5.5997 -5.6623 19 6 8.4278 -5.6011 -6.4370 20 1 8.9525 -4.6767 -6.6285 21 6 8.8980 -6.7906 -6.9763 22 7 8.1553 -7.8759 -6.9239 23 14 10.5849 -6.8510 -7.7764 24 1 11.2141 -5.5076 -7.7071 25 1 11.4371 -7.8346 -7.0612 26 1 10.4445 -7.2585 -9.1975 27 6 6.4137 -4.4257 -5.6200 28 6 6.1697 -4.0527 -4.1538 29 1 -0.3633 0.4511 0.9234 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0848 1.3425 0.0185 33 1 1.6608 1.8891 -0.8991 34 1 1.6309 1.9005 0.8806 35 1 1.7259 -0.7735 4.3408 36 1 3.2834 -2.6567 4.0795 37 1 4.0162 -3.3331 1.8080 38 1 4.2896 -3.7945 0.0100 39 1 5.0122 -2.7851 -2.5269 40 1 3.5374 -3.7642 -2.7121 41 1 4.6767 -5.6854 -1.6361 42 1 6.1519 -4.7068 -1.4505 43 1 6.3000 -7.1429 -2.8240 44 1 7.6009 -5.9367 -2.9750 45 1 7.7605 -7.4883 -4.8572 46 1 6.0416 -7.2399 -5.2546 47 1 8.4837 -8.7071 -7.3011 48 1 6.8878 -3.5908 -6.1362 49 1 5.4647 -4.6650 -6.0997 50 1 7.1032 -3.7142 -3.7044 51 1 5.4293 -3.2545 -4.1000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479941652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:30 Heat of formation + Delta-G solvation = 44.957750 kcal Electronic energy + Delta-G solvation = -30365.403109 eV Core-core repulsion = 26300.798594 eV Total energy + Delta-G solvation = -4064.604515 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.89651 -40.29187 -39.56014 -37.93163 -36.80505 -35.35454 -33.78109 -33.12859 -31.84316 -31.57225 -30.00756 -28.60897 -27.74776 -26.06378 -25.58429 -25.03587 -24.14213 -22.83004 -22.30914 -21.72582 -20.80299 -18.90964 -18.71154 -18.00213 -17.87948 -17.07146 -16.75025 -16.72947 -16.27564 -15.93155 -15.91033 -15.68283 -15.45213 -15.30600 -15.07742 -15.03762 -14.92225 -14.63470 -14.32437 -14.00465 -13.92715 -13.58969 -13.19732 -13.13878 -12.96728 -12.95910 -12.94191 -12.75114 -12.62937 -12.40624 -12.25856 -12.00889 -11.90632 -11.50669 -11.41953 -11.07453 -10.97345 -10.76761 -10.60395 -10.13950 -9.93386 -9.45887 -9.26674 -8.62564 -7.86894 -5.37200 -0.37601 0.12404 1.46178 1.47337 1.58216 1.92927 2.02159 2.50182 2.64647 2.77373 3.08062 3.29654 3.45415 3.68470 3.73172 3.80111 3.89611 4.00308 4.08739 4.11155 4.30914 4.34396 4.35370 4.37755 4.45584 4.48915 4.53642 4.58167 4.61964 4.65714 4.71940 4.84820 4.87660 4.88111 4.92903 4.95626 4.97062 5.06067 5.06702 5.20339 5.37427 5.40055 5.44490 5.61515 5.72445 5.81130 6.14780 6.23270 6.23875 6.40229 6.56254 6.81593 7.14995 7.30181 7.83502 8.39149 9.19524 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.001841 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.482912 B =15207.472158 C =15796.179836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.498 5.498 3 C 0.045 3.955 4 C 0.326 3.674 5 N -0.539 5.539 6 C 0.128 3.872 7 C -0.169 4.169 8 C -0.036 4.036 9 C -0.181 4.181 10 C 0.555 3.445 11 O -0.537 6.537 12 N -0.715 5.715 13 C 0.130 3.870 14 C 0.053 3.947 15 N -0.540 5.540 16 C 0.053 3.947 17 C 0.184 3.816 18 N -0.615 5.615 19 C -0.263 4.263 20 H 0.065 0.935 21 C -0.051 4.051 22 N -0.936 5.936 23 Si 0.972 3.028 24 H -0.268 1.268 25 H -0.287 1.287 26 H -0.292 1.292 27 C 0.143 3.857 28 C 0.050 3.950 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.190 0.810 36 H 0.183 0.817 37 H 0.172 0.828 38 H 0.412 0.588 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.024 0.976 45 H 0.059 0.941 46 H -0.002 1.002 47 H 0.251 0.749 48 H 0.057 0.943 49 H 0.014 0.986 50 H 0.025 0.975 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.391 12.252 26.652 31.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.221 5.221 3 C -0.102 4.102 4 C 0.097 3.903 5 N -0.252 5.252 6 C -0.031 4.031 7 C -0.189 4.189 8 C -0.062 4.062 9 C -0.188 4.188 10 C 0.341 3.659 11 O -0.413 6.413 12 N -0.370 5.370 13 C 0.006 3.994 14 C -0.075 4.075 15 N -0.266 5.266 16 C -0.076 4.076 17 C 0.058 3.942 18 N -0.339 5.339 19 C -0.394 4.394 20 H 0.082 0.918 21 C -0.246 4.246 22 N -0.582 5.582 23 Si 0.800 3.200 24 H -0.192 1.192 25 H -0.214 1.214 26 H -0.219 1.219 27 C 0.017 3.983 28 C -0.080 4.080 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.207 0.793 36 H 0.201 0.799 37 H 0.189 0.811 38 H 0.249 0.751 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.016 0.984 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.032 0.968 50 H 0.044 0.956 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.427 12.926 25.292 31.418 hybrid contribution 1.830 -0.567 0.244 1.931 sum -11.598 12.359 25.536 30.649 Atomic orbital electron populations 1.22319 0.84665 1.02163 1.01813 1.59886 1.09802 1.15448 1.36960 1.22251 0.99800 0.86304 1.01833 1.19964 0.91218 0.91388 0.87732 1.67905 1.26594 1.30957 0.99710 1.23460 0.91309 0.90539 0.97771 1.22526 0.98722 0.98760 0.98863 1.22190 0.95653 0.97101 0.91303 1.20740 1.03597 1.00066 0.94444 1.18114 0.78366 0.80785 0.88593 1.90842 1.54557 1.51563 1.44383 1.45676 1.53750 1.27731 1.09821 1.21257 0.98605 0.96324 0.83250 1.22244 0.98540 0.96991 0.89705 1.61910 1.40751 1.08913 1.15032 1.22600 0.92262 0.94192 0.98544 1.20641 0.97121 0.89031 0.87359 1.44376 1.24996 1.13791 1.50775 1.19542 1.01465 0.94325 1.24027 0.91759 1.25933 1.02374 0.96727 0.99604 1.70151 1.37445 1.00836 1.49804 0.85143 0.79656 0.77795 0.77451 1.19195 1.21373 1.21897 1.21133 0.92764 0.89898 0.94518 1.22569 0.97913 0.92499 0.94984 0.93863 0.89763 0.92464 0.92710 0.89764 0.94146 0.79305 0.79937 0.81101 0.75091 0.92160 0.92036 0.88542 0.93381 0.89431 0.95806 0.92271 0.98409 0.94001 0.92410 0.96777 0.95636 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.40 127.69 1.20 1.94 16 2 N -0.50 -11.80 2.97 -751.06 -2.23 -14.02 16 3 C 0.04 0.91 9.46 127.69 1.21 2.12 16 4 C 0.33 7.10 5.33 133.65 0.71 7.82 16 5 N -0.54 -9.89 9.57 -192.52 -1.84 -11.73 16 6 C 0.13 1.34 11.16 84.72 0.95 2.29 16 7 C -0.17 -1.15 10.09 22.32 0.23 -0.92 16 8 C -0.04 -0.37 9.63 22.71 0.22 -0.16 16 9 C -0.18 -3.53 5.91 -19.88 -0.12 -3.65 16 10 C 0.56 13.48 7.75 86.66 0.67 14.15 16 11 O -0.54 -17.62 15.09 -4.05 -0.06 -17.68 16 12 N -0.71 -13.49 5.51 -466.38 -2.57 -16.06 16 13 C 0.13 3.07 4.93 86.38 0.43 3.49 16 14 C 0.05 1.23 5.38 86.30 0.46 1.69 16 15 N -0.54 -17.92 4.78 -895.27 -4.28 -22.20 16 16 C 0.05 1.97 5.58 86.38 0.48 2.45 16 17 C 0.18 9.08 5.36 86.35 0.46 9.54 16 18 N -0.62 -32.02 3.03 -698.14 -2.11 -34.14 16 19 C -0.26 -14.81 9.63 84.03 0.81 -14.00 16 20 H 0.06 3.54 7.85 -2.91 -0.02 3.51 16 21 C -0.05 -2.89 5.06 84.86 0.43 -2.46 16 22 N -0.94 -55.88 11.04 21.65 0.24 -55.64 16 23 Si 0.97 45.23 29.57 68.60 2.03 47.26 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 C 0.14 6.25 6.69 86.35 0.58 6.83 16 28 C 0.05 1.74 5.04 86.38 0.44 2.17 16 29 H 0.04 0.80 7.76 -2.39 -0.02 0.78 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.05 1.20 8.11 -2.39 -0.02 1.18 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.04 0.75 8.10 -2.38 -0.02 0.73 16 35 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 36 H 0.18 -0.19 8.06 -2.91 -0.02 -0.22 16 37 H 0.17 0.61 6.55 -2.91 -0.02 0.59 16 38 H 0.41 4.65 6.60 -92.71 -0.61 4.03 16 39 H 0.06 1.61 6.18 -2.39 -0.01 1.60 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 43 H 0.09 2.77 8.11 -2.39 -0.02 2.75 16 44 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 45 H 0.06 3.25 6.19 -2.39 -0.01 3.23 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.06 2.45 7.95 -2.38 -0.02 2.43 16 49 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 51 H 0.09 2.84 5.73 -2.39 -0.01 2.82 16 Total: -1.00 -77.42 404.18 -1.36 -78.78 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.32 Total: 12.13 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 9.15 Total: 33.31 kcal Atomic # 7 Polarization: -141.00 SS G_CDS: -12.79 Total: -153.79 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.06 Total: -17.68 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -77.42 -1.36 -78.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479941652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.733 kcal (2) G-P(sol) polarization free energy of solvation -77.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds