Wall clock time and date at job start Wed Apr 1 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40443 * 126.82250 * 2 1 4 4 C 1.30709 * 106.79128 * 180.26341 * 3 2 1 5 5 C 1.50706 * 125.52614 * 179.71624 * 4 3 2 6 6 C 1.53005 * 117.49680 * 8.66245 * 5 4 3 7 7 C 1.52995 * 117.49670 * 300.03978 * 5 4 3 8 8 N 1.33235 * 108.94876 * 359.74831 * 4 3 2 9 9 C 1.30833 * 109.83044 * 0.02562 * 8 4 3 10 10 C 1.50701 * 125.96520 * 179.97438 * 9 8 4 11 11 C 1.50692 * 109.46962 * 90.02135 * 10 9 8 12 12 O 1.21280 * 120.00268 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99809 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46896 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.52249 * 55.08725 * 15 14 13 17 17 C 1.53072 * 109.62425 * 175.10710 * 15 14 13 18 18 C 1.53042 * 109.66170 * 181.16951 * 17 15 14 19 19 C 1.53185 * 109.31328 * 298.70430 * 18 17 15 20 20 N 1.46932 * 108.77860 * 54.63608 * 19 18 17 21 21 C 1.36934 * 120.63392 * 126.41072 * 20 19 18 22 22 H 1.07997 * 119.99862 * 331.80624 * 21 20 19 23 23 C 1.38806 * 120.00015 * 151.80754 * 21 20 19 24 24 N 1.31624 * 120.00191 * 343.08772 * 23 21 20 25 25 Si 1.86800 * 120.00146 * 163.08448 * 23 21 20 26 26 H 1.48503 * 109.47142 * 60.00161 * 25 23 21 27 27 H 1.48498 * 109.47084 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47267 * 300.00095 * 25 23 21 29 29 C 1.46928 * 118.73342 * 306.38841 * 20 19 18 30 30 H 1.09003 * 109.47189 * 270.16709 * 1 2 3 31 31 H 1.09002 * 109.47886 * 30.17078 * 1 2 3 32 32 H 1.08999 * 109.47383 * 150.17574 * 1 2 3 33 33 H 1.08999 * 115.54811 * 154.36999 * 5 4 3 34 34 H 1.08998 * 117.50006 * 359.97438 * 6 5 4 35 35 H 1.09001 * 117.49676 * 145.02433 * 6 5 4 36 36 H 1.09000 * 117.49691 * 214.97408 * 7 5 4 37 37 H 1.08998 * 117.50529 * 359.97438 * 7 5 4 38 38 H 1.09005 * 109.46916 * 330.02384 * 10 9 8 39 39 H 1.09000 * 109.47229 * 210.02677 * 10 9 8 40 40 H 0.97002 * 119.99886 * 0.02562 * 13 11 10 41 41 H 1.09002 * 109.46647 * 60.00574 * 14 13 11 42 42 H 1.09000 * 109.47544 * 300.00625 * 14 13 11 43 43 H 1.09003 * 109.34638 * 61.14889 * 17 15 14 44 44 H 1.09001 * 109.44540 * 301.25971 * 17 15 14 45 45 H 1.09003 * 109.49717 * 178.74555 * 18 17 15 46 46 H 1.08999 * 109.49263 * 58.65769 * 18 17 15 47 47 H 1.08996 * 109.58772 * 294.84198 * 19 18 17 48 48 H 1.09009 * 109.70268 * 174.48881 * 19 18 17 49 49 H 0.96995 * 120.00379 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.58613 * 173.39178 * 29 20 19 51 51 H 1.08995 * 109.59058 * 293.68043 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5347 0.6765 -0.0058 5 6 4.7776 1.5289 -0.0141 6 6 4.6024 3.0353 0.1884 7 6 4.9695 2.4865 -1.1918 8 7 3.5096 -0.6556 -0.0038 9 6 2.2707 -1.0761 0.0027 10 6 1.8246 -2.5156 0.0062 11 6 1.6824 -2.9938 1.4281 12 8 1.9194 -2.2399 2.3481 13 7 1.2908 -4.2592 1.6775 14 6 1.1520 -4.7240 3.0599 15 6 0.6993 -6.1854 3.0635 16 1 1.3938 -6.7833 2.4734 17 6 0.6705 -6.7112 4.5008 18 6 0.2458 -8.1815 4.5029 19 6 -1.1638 -8.3025 3.9156 20 7 -1.1791 -7.6719 2.5886 21 6 -1.6274 -8.3612 1.4936 22 1 -1.5443 -9.4375 1.4619 23 6 -2.1886 -7.6766 0.4245 24 7 -2.5965 -6.4348 0.5793 25 14 -2.3649 -8.5177 -1.2341 26 1 -3.2217 -9.7220 -1.0899 27 1 -2.9884 -7.5790 -2.2013 28 1 -1.0243 -8.9204 -1.7300 29 6 -0.7047 -6.2874 2.4590 30 1 -0.3634 0.0030 1.0277 31 1 -0.3635 0.8884 -0.5165 32 1 -0.3634 -0.8915 -0.5111 33 1 5.6690 1.0644 0.4074 34 1 3.5882 3.4099 0.3272 35 1 5.3787 3.5622 0.7433 36 1 5.9873 2.6523 -1.5448 37 1 4.1972 2.4997 -1.9608 38 1 2.5649 -3.1266 -0.5103 39 1 0.8647 -2.5998 -0.5033 40 1 1.1009 -4.8620 0.9417 41 1 0.4117 -4.1126 3.5761 42 1 2.1118 -4.6400 3.5697 43 1 -0.0407 -6.1270 5.0849 44 1 1.6636 -6.6194 4.9407 45 1 0.2477 -8.5593 5.5254 46 1 0.9428 -8.7622 3.8987 47 1 -1.8761 -7.7978 4.5683 48 1 -1.4345 -9.3544 3.8234 49 1 -2.9890 -5.9565 -0.1677 50 1 -0.6698 -6.0102 1.4054 51 1 -1.3809 -5.6180 2.9907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480269726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:12 Heat of formation + Delta-G solvation = 89.393104 kcal Electronic energy + Delta-G solvation = -30576.548735 eV Core-core repulsion = 26513.871082 eV Total energy + Delta-G solvation = -4062.677653 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.24904 -39.58096 -37.83086 -37.38749 -34.73857 -33.97793 -33.16799 -32.69481 -30.99822 -29.93370 -28.96366 -27.40761 -25.46863 -25.18482 -23.86525 -22.62227 -22.27697 -21.46414 -20.76397 -20.23088 -19.83505 -19.05759 -17.31047 -17.12991 -16.78981 -15.98990 -15.80693 -15.48733 -15.43709 -14.95227 -14.80803 -14.18661 -13.88774 -13.84196 -13.64890 -13.56025 -13.40135 -13.24897 -12.94986 -12.59905 -12.37030 -12.31018 -12.25348 -12.01118 -11.82802 -11.65351 -11.29577 -11.07901 -11.07138 -10.78877 -10.74712 -10.56568 -10.31392 -10.25132 -10.04782 -10.00407 -9.95545 -9.73296 -9.59094 -9.50847 -9.24033 -8.84384 -8.57021 -6.75399 -5.89037 -3.31307 1.47747 2.18743 2.64119 2.68374 3.29792 3.34029 3.35647 3.37721 3.67890 3.81619 4.24110 4.35875 4.40101 4.64042 4.74543 4.77930 4.85122 4.97540 5.00337 5.10554 5.20010 5.25486 5.30786 5.39193 5.44767 5.48738 5.52094 5.53731 5.58215 5.74093 5.87091 5.90975 5.92660 6.04725 6.22500 6.23594 6.24831 6.34089 6.37594 6.44614 6.59289 6.62848 6.68835 6.75553 6.79656 6.95283 7.22019 7.50815 7.64211 7.69807 8.07600 8.29947 8.34680 9.11573 9.74619 10.32402 11.18949 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.002380 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.345447 B =11762.942550 C =13071.799104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.371 5.371 3 N -0.317 5.317 4 C 0.253 3.747 5 C -0.068 4.068 6 C -0.161 4.161 7 C -0.160 4.160 8 N -0.529 5.529 9 C 0.307 3.693 10 C -0.070 4.070 11 C 0.519 3.481 12 O -0.538 6.538 13 N -0.714 5.714 14 C 0.132 3.868 15 C -0.128 4.128 16 H 0.070 0.930 17 C -0.100 4.100 18 C -0.133 4.133 19 C 0.143 3.857 20 N -0.592 5.592 21 C -0.250 4.250 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.903 5.903 25 Si 0.901 3.099 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.179 3.821 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.408 0.592 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.053 0.947 49 H 0.253 0.747 50 H 0.087 0.913 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.180 11.938 -1.692 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.160 5.160 3 N -0.146 5.146 4 C -0.029 4.029 5 C -0.089 4.089 6 C -0.199 4.199 7 C -0.198 4.198 8 N -0.256 5.256 9 C 0.030 3.970 10 C -0.112 4.112 11 C 0.302 3.698 12 O -0.415 6.415 13 N -0.366 5.366 14 C 0.009 3.991 15 C -0.149 4.149 16 H 0.089 0.911 17 C -0.139 4.139 18 C -0.172 4.172 19 C 0.016 3.984 20 N -0.314 5.314 21 C -0.380 4.380 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.548 5.548 25 Si 0.730 3.270 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.210 1.210 29 C 0.053 3.947 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.148 0.852 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.243 0.757 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 10.200 13.101 -1.148 16.643 hybrid contribution -0.621 -0.971 -1.157 1.634 sum 9.579 12.129 -2.305 15.627 Atomic orbital electron populations 1.22014 0.73582 1.04857 1.04417 1.50064 1.07877 1.03694 1.54389 1.77890 1.01290 1.07595 1.27782 1.23005 0.92390 0.89251 0.98236 1.20029 0.93498 0.89850 1.05528 1.23029 1.03780 0.93795 0.99309 1.23020 1.03123 1.01958 0.91732 1.70205 1.19437 1.10801 1.25155 1.23277 0.86045 0.91419 0.96250 1.20217 1.05269 0.88238 0.97494 1.19973 0.77404 0.82410 0.89983 1.90744 1.49921 1.54778 1.46098 1.45961 1.68086 1.12344 1.10181 1.21401 1.00575 0.95577 0.81589 1.22151 1.02179 0.92751 0.97793 0.91124 1.21337 0.99929 0.96778 0.95813 1.21983 0.99950 0.95804 0.99461 1.20938 0.92836 0.96938 0.87640 1.44025 1.72988 1.11803 1.02623 1.19164 1.33206 0.91321 0.94287 0.91743 1.25029 0.98115 0.96894 0.99611 1.70038 1.43142 1.11174 1.30449 0.86400 0.77897 0.78739 0.83929 1.20889 1.21636 1.21010 1.20794 0.87534 0.85637 1.00731 0.89804 0.88878 0.88753 0.85205 0.87882 0.87920 0.87828 0.88626 0.85002 0.86254 0.75692 0.91695 0.92216 0.92516 0.93377 0.93036 0.92389 0.96500 0.92891 0.93667 0.89464 0.96375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.33 59.85 0.68 1.59 16 2 N -0.37 -5.13 4.04 -65.10 -0.26 -5.39 16 3 N -0.32 -4.77 12.24 32.42 0.40 -4.38 16 4 C 0.25 3.77 7.69 -156.86 -1.21 2.57 16 5 C -0.07 -0.77 6.33 -91.77 -0.58 -1.35 16 6 C -0.16 -1.46 10.13 -26.73 -0.27 -1.73 16 7 C -0.16 -1.39 10.23 -26.73 -0.27 -1.66 16 8 N -0.53 -8.48 11.19 -8.16 -0.09 -8.57 16 9 C 0.31 4.43 6.48 -155.69 -1.01 3.43 16 10 C -0.07 -0.80 6.03 -29.04 -0.18 -0.98 16 11 C 0.52 7.66 7.82 -10.99 -0.09 7.58 16 12 O -0.54 -10.11 16.03 5.56 0.09 -10.03 16 13 N -0.71 -10.19 5.33 -60.29 -0.32 -10.51 16 14 C 0.13 2.05 5.08 -4.04 -0.02 2.03 16 15 C -0.13 -2.15 2.38 -90.48 -0.22 -2.37 16 16 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 17 C -0.10 -1.57 5.17 -26.67 -0.14 -1.71 16 18 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 19 C 0.14 2.84 6.52 -3.71 -0.02 2.82 16 20 N -0.59 -13.80 3.00 -172.32 -0.52 -14.32 16 21 C -0.25 -6.42 9.58 -15.06 -0.14 -6.57 16 22 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 23 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 24 N -0.90 -23.99 11.20 55.49 0.62 -23.37 16 25 Si 0.90 20.20 29.59 -169.99 -5.03 15.17 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 C 0.18 3.80 4.38 -3.71 -0.02 3.79 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.71 7.10 -51.93 -0.37 0.34 16 33 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.10 1.04 7.88 -51.93 -0.41 0.63 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.12 1.03 7.12 -51.93 -0.37 0.66 16 40 H 0.41 5.40 7.70 -40.82 -0.31 5.09 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.05 1.04 7.93 -51.92 -0.41 0.63 16 49 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 50 H 0.09 1.98 5.26 -51.93 -0.27 1.71 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 413.53 15.07 6.23 6.23 Total: -1.00 -33.67 413.53 -11.07 -44.74 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.46 Total: 5.36 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -3.73 Total: 5.06 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -0.17 Total: -66.53 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.67 -11.07 -44.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480269726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.131 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds